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Fine-scale genetic analysis of the exploited Nile monitor (Varanus niloticus) in Sahelian Africa.

Dowell SA, de Buffrénil V, Kolokotronis SO, Hekkala ER.

BMC Genet. 2015 Mar 28;16:32. doi: 10.1186/s12863-015-0188-x.


Evolution of the indoor biome.

NESCent Working Group on the Evolutionary Biology of the Built Environment, Martin LJ, Adams RI, Bateman A, Bik HM, Hawks J, Hird SM, Hughes D, Kembel SW, Kinney K, Kolokotronis SO, Levy G, McClain C, Meadow JF, Medina RF, Mhuireach G, Moreau CS, Munshi-South J, Nichols LM, Palmer C, Popova L, Schal C, Täubel M, Trautwein M, Ugalde JA, Dunn RR.

Trends Ecol Evol. 2015 Apr;30(4):223-232. doi: 10.1016/j.tree.2015.02.001. Epub 2015 Mar 11. Review.


Changes in the Mitogenome Announcement manuscript category.

DeSalle R, Kolokotronis SO.

Mitochondrial DNA. 2015 Feb;26(1):1. doi: 10.3109/19401736.2015.1013392. Epub 2015 Feb 19. No abstract available.


Negative purifying selection drives prion and doppel protein evolution.

Tsangaras K, Kolokotronis SO, Ulrich RG, Morand S, Michaux J, Greenwood AD.

J Mol Evol. 2014 Aug;79(1-2):12-20. doi: 10.1007/s00239-014-9632-1. Epub 2014 Jul 20.


In the wake of invasion: tracing the historical biogeography of the South American cricetid radiation (Rodentia, Sigmodontinae).

Leite RN, Kolokotronis SO, Almeida FC, Werneck FP, Rogers DS, Weksler M.

PLoS One. 2014 Jun 25;9(6):e100687. doi: 10.1371/journal.pone.0100687. eCollection 2014. Erratum in: PLoS One. 2014;9(10):e110081.


Evolution of hypervirulence by a MRSA clone through acquisition of a transposable element.

Benson MA, Ohneck EA, Ryan C, Alonzo F 3rd, Smith H, Narechania A, Kolokotronis SO, Satola SW, Uhlemann AC, Sebra R, Deikus G, Shopsin B, Planet PJ, Torres VJ.

Mol Microbiol. 2014 Aug;93(4):664-81. doi: 10.1111/mmi.12682. Epub 2014 Jul 16.


Mycobacterial phylogenomics: an enhanced method for gene turnover analysis reveals uneven levels of gene gain and loss among species and gene families.

Librado P, Vieira FG, Sánchez-Gracia A, Kolokotronis SO, Rozas J.

Genome Biol Evol. 2014 Jun 5;6(6):1454-65. doi: 10.1093/gbe/evu117.


Biogeography and taxonomy of extinct and endangered monk seals illuminated by ancient DNA and skull morphology.

Scheel DM, Slater GJ, Kolokotronis SO, Potter CW, Rotstein DS, Tsangaras K, Greenwood AD, Helgen KM.

Zookeys. 2014 May 14;(409):1-33. doi: 10.3897/zookeys.409.6244. eCollection 2014.


Emergence of the epidemic methicillin-resistant Staphylococcus aureus strain USA300 coincides with horizontal transfer of the arginine catabolic mobile element and speG-mediated adaptations for survival on skin.

Planet PJ, LaRussa SJ, Dana A, Smith H, Xu A, Ryan C, Uhlemann AC, Boundy S, Goldberg J, Narechania A, Kulkarni R, Ratner AJ, Geoghegan JA, Kolokotronis SO, Prince A.

MBio. 2013 Dec 17;4(6):e00889-13. doi: 10.1128/mBio.00889-13.


Integrating multiple lines of evidence to better understand the evolutionary divergence of humpback dolphins along their entire distribution range: a new dolphin species in Australian waters?

Mendez M, Jefferson TA, Kolokotronis SO, Krützen M, Parra GJ, Collins T, Minton G, Baldwin R, Berggren P, Särnblad A, Amir OA, Peddemors VM, Karczmarski L, Guissamulo A, Smith B, Sutaria D, Amato G, Rosenbaum HC.

Mol Ecol. 2013 Dec;22(23):5936-48. doi: 10.1111/mec.12535. Epub 2013 Oct 29.


Molecular surveillance of low pathogenic avian influenza viruses in wild birds across the United States: inferences from the hemagglutinin gene.

Piaggio AJ, Shriner SA, VanDalen KK, Franklin AB, Anderson TD, Kolokotronis SO.

PLoS One. 2012;7(12):e50834. doi: 10.1371/journal.pone.0050834. Epub 2012 Dec 4.


Testing the effectiveness of an international conservation agreement: marketplace forensics and CITES caviar trade regulation.

Doukakis P, Pikitch EK, Rothschild A, DeSalle R, Amato G, Kolokotronis SO.

PLoS One. 2012;7(7):e40907. doi: 10.1371/journal.pone.0040907. Epub 2012 Jul 25.


Zoonotic viruses associated with illegally imported wildlife products.

Smith KM, Anthony SJ, Switzer WM, Epstein JH, Seimon T, Jia H, Sanchez MD, Huynh TT, Galland GG, Shapiro SE, Sleeman JM, McAloose D, Stuchin M, Amato G, Kolokotronis SO, Lipkin WI, Karesh WB, Daszak P, Marano N.

PLoS One. 2012;7(1):e29505. doi: 10.1371/journal.pone.0029505. Epub 2012 Jan 10.


A functional phylogenomic view of the seed plants.

Lee EK, Cibrian-Jaramillo A, Kolokotronis SO, Katari MS, Stamatakis A, Ott M, Chiu JC, Little DP, Stevenson DW, McCombie WR, Martienssen RA, Coruzzi G, Desalle R.

PLoS Genet. 2011 Dec;7(12):e1002411. doi: 10.1371/journal.pgen.1002411. Epub 2011 Dec 15.


Random Addition Concatenation Analysis: a novel approach to the exploration of phylogenomic signal reveals strong agreement between core and shell genomic partitions in the cyanobacteria.

Narechania A, Baker RH, Sit R, Kolokotronis SO, DeSalle R, Planet PJ.

Genome Biol Evol. 2012;4(1):30-43. doi: 10.1093/gbe/evr121. Epub 2011 Nov 16.


The Fish Barcode of Life (FISH-BOL) special issue.

Hanner R, Desalle R, Ward RD, Kolokotronis SO.

Mitochondrial DNA. 2011 Oct;22 Suppl 1:1-2. doi: 10.3109/19401736.2011.598767. No abstract available.


Reconciling apparent conflicts between mitochondrial and nuclear phylogenies in African elephants.

Ishida Y, Oleksyk TK, Georgiadis NJ, David VA, Zhao K, Stephens RM, Kolokotronis SO, Roca AL.

PLoS One. 2011;6(6):e20642. doi: 10.1371/journal.pone.0020642. Epub 2011 Jun 8.


Bayesian estimation of substitution rates from ancient DNA sequences with low information content.

Ho SY, Lanfear R, Phillips MJ, Barnes I, Thomas JA, Kolokotronis SO, Shapiro B.

Syst Biol. 2011 May;60(3):366-75. doi: 10.1093/sysbio/syq099. Epub 2011 Feb 4. No abstract available.


Genetic variation in avocado stem weevils Copturus aguacatae (Coleoptera: Curculionidae) in Mexico.

Engstrand RC, Cibrián Tovar J, Cibrián-Jaramillo A, Kolokotronis SO.

Mitochondrial DNA. 2010 Dec;21 Suppl 1:38-43. doi: 10.3109/19401736.2010.536226.


The MexBOL initiative.

Escalante P, Desalle R, Kolokotronis SO.

Mitochondrial DNA. 2010 Dec;21 Suppl 1:1-2. doi: 10.3109/19401736.2010.551715. No abstract available.

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