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Results: 1 to 20 of 31

1.

Negative Purifying Selection Drives Prion and Doppel Protein Evolution.

Tsangaras K, Kolokotronis SO, Ulrich RG, Morand S, Michaux J, Greenwood AD.

J Mol Evol. 2014 Jul 20. [Epub ahead of print]

PMID:
25038839
[PubMed - as supplied by publisher]
2.

In the wake of invasion: tracing the historical biogeography of the South american cricetid radiation (rodentia, sigmodontinae).

Leite RN, Kolokotronis SO, Almeida FC, Werneck FP, Rogers DS, Weksler M.

PLoS One. 2014 Jun 25;9(6):e100687. doi: 10.1371/journal.pone.0100687. eCollection 2014.

PMID:
24963664
[PubMed - in process]
Free PMC Article
3.

Evolution of hypervirulence by a MRSA clone through acquisition of a transposable element.

Benson MA, Ohneck EA, Ryan C, Alonzo F 3rd, Smith H, Narechania A, Kolokotronis SO, Satola SW, Uhlemann AC, Sebra R, Deikus G, Shopsin B, Planet PJ, Torres VJ.

Mol Microbiol. 2014 Jun 24. doi: 10.1111/mmi.12682. [Epub ahead of print]

PMID:
24962815
[PubMed - as supplied by publisher]
4.

Mycobacterial Phylogenomics: An Enhanced Method for Gene Turnover Analysis Reveals Uneven Levels of Gene Gain and Loss among Species and Gene Families.

Librado P, Vieira FG, Sánchez-Gracia A, Kolokotronis SO, Rozas J.

Genome Biol Evol. 2014 Jun 5;6(6):1454-65. doi: 10.1093/gbe/evu117.

PMID:
24904011
[PubMed - in process]
Free PMC Article
5.

Biogeography and taxonomy of extinct and endangered monk seals illuminated by ancient DNA and skull morphology.

Scheel DM, Slater GJ, Kolokotronis SO, Potter CW, Rotstein DS, Tsangaras K, Greenwood AD, Helgen KM.

Zookeys. 2014 May 14;(409):1-33. doi: 10.3897/zookeys.409.6244. eCollection 2014.

PMID:
24899841
[PubMed]
Free PMC Article
6.

Emergence of the epidemic methicillin-resistant Staphylococcus aureus strain USA300 coincides with horizontal transfer of the arginine catabolic mobile element and speG-mediated adaptations for survival on skin.

Planet PJ, LaRussa SJ, Dana A, Smith H, Xu A, Ryan C, Uhlemann AC, Boundy S, Goldberg J, Narechania A, Kulkarni R, Ratner AJ, Geoghegan JA, Kolokotronis SO, Prince A.

MBio. 2013 Dec 17;4(6):e00889-13. doi: 10.1128/mBio.00889-13.

PMID:
24345744
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Integrating multiple lines of evidence to better understand the evolutionary divergence of humpback dolphins along their entire distribution range: a new dolphin species in Australian waters?

Mendez M, Jefferson TA, Kolokotronis SO, Krützen M, Parra GJ, Collins T, Minton G, Baldwin R, Berggren P, Särnblad A, Amir OA, Peddemors VM, Karczmarski L, Guissamulo A, Smith B, Sutaria D, Amato G, Rosenbaum HC.

Mol Ecol. 2013 Dec;22(23):5936-48. doi: 10.1111/mec.12535. Epub 2013 Oct 29.

PMID:
24268046
[PubMed - indexed for MEDLINE]
8.

Molecular surveillance of low pathogenic avian influenza viruses in wild birds across the United States: inferences from the hemagglutinin gene.

Piaggio AJ, Shriner SA, VanDalen KK, Franklin AB, Anderson TD, Kolokotronis SO.

PLoS One. 2012;7(12):e50834. doi: 10.1371/journal.pone.0050834. Epub 2012 Dec 4.

PMID:
23226543
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Testing the effectiveness of an international conservation agreement: marketplace forensics and CITES caviar trade regulation.

Doukakis P, Pikitch EK, Rothschild A, DeSalle R, Amato G, Kolokotronis SO.

PLoS One. 2012;7(7):e40907. doi: 10.1371/journal.pone.0040907. Epub 2012 Jul 25.

PMID:
22848410
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Zoonotic viruses associated with illegally imported wildlife products.

Smith KM, Anthony SJ, Switzer WM, Epstein JH, Seimon T, Jia H, Sanchez MD, Huynh TT, Galland GG, Shapiro SE, Sleeman JM, McAloose D, Stuchin M, Amato G, Kolokotronis SO, Lipkin WI, Karesh WB, Daszak P, Marano N.

PLoS One. 2012;7(1):e29505. doi: 10.1371/journal.pone.0029505. Epub 2012 Jan 10.

PMID:
22253731
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

A functional phylogenomic view of the seed plants.

Lee EK, Cibrian-Jaramillo A, Kolokotronis SO, Katari MS, Stamatakis A, Ott M, Chiu JC, Little DP, Stevenson DW, McCombie WR, Martienssen RA, Coruzzi G, Desalle R.

PLoS Genet. 2011 Dec;7(12):e1002411. doi: 10.1371/journal.pgen.1002411. Epub 2011 Dec 15.

PMID:
22194700
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Random Addition Concatenation Analysis: a novel approach to the exploration of phylogenomic signal reveals strong agreement between core and shell genomic partitions in the cyanobacteria.

Narechania A, Baker RH, Sit R, Kolokotronis SO, DeSalle R, Planet PJ.

Genome Biol Evol. 2012;4(1):30-43. doi: 10.1093/gbe/evr121. Epub 2011 Nov 16.

PMID:
22094860
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

The Fish Barcode of Life (FISH-BOL) special issue.

Hanner R, Desalle R, Ward RD, Kolokotronis SO.

Mitochondrial DNA. 2011 Oct;22 Suppl 1:1-2. doi: 10.3109/19401736.2011.598767. No abstract available.

PMID:
21980984
[PubMed - indexed for MEDLINE]
14.

Reconciling apparent conflicts between mitochondrial and nuclear phylogenies in African elephants.

Ishida Y, Oleksyk TK, Georgiadis NJ, David VA, Zhao K, Stephens RM, Kolokotronis SO, Roca AL.

PLoS One. 2011;6(6):e20642. doi: 10.1371/journal.pone.0020642. Epub 2011 Jun 8.

PMID:
21701575
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Bayesian estimation of substitution rates from ancient DNA sequences with low information content.

Ho SY, Lanfear R, Phillips MJ, Barnes I, Thomas JA, Kolokotronis SO, Shapiro B.

Syst Biol. 2011 May;60(3):366-75. doi: 10.1093/sysbio/syq099. Epub 2011 Feb 4. No abstract available.

PMID:
21296909
[PubMed - indexed for MEDLINE]
16.

Genetic variation in avocado stem weevils Copturus aguacatae (Coleoptera: Curculionidae) in Mexico.

Engstrand RC, Cibrián Tovar J, Cibrián-Jaramillo A, Kolokotronis SO.

Mitochondrial DNA. 2010 Dec;21 Suppl 1:38-43. doi: 10.3109/19401736.2010.536226.

PMID:
21271857
[PubMed - indexed for MEDLINE]
17.

The MexBOL initiative.

Escalante P, Desalle R, Kolokotronis SO.

Mitochondrial DNA. 2010 Dec;21 Suppl 1:1-2. doi: 10.3109/19401736.2010.551715. No abstract available.

PMID:
21271851
[PubMed - indexed for MEDLINE]
18.

Evolutionary dynamics of endogenous feline leukemia virus proliferation among species of the domestic cat lineage.

Polani S, Roca AL, Rosensteel BB, Kolokotronis SO, Bar-Gal GK.

Virology. 2010 Sep 30;405(2):397-407. doi: 10.1016/j.virol.2010.06.010. Epub 2010 Jul 7.

PMID:
20615520
[PubMed - indexed for MEDLINE]
Free Article
19.

Wild bird's-eye view of influenza virus A(H1N1) phylogenetic evolution.

Piaggio AJ, Clark L, Franklin AB, Kolokotronis SO.

Ecohealth. 2009 Sep;6(3):346-50. doi: 10.1007/s10393-009-0270-9. Epub 2010 May 11. Erratum in: Ecohealth. 2010 Sep;7(3):408-9.

PMID:
20458519
[PubMed - indexed for MEDLINE]
20.

DNA barcodes reveal species-specific mercury levels in tuna sushi that pose a health risk to consumers.

Lowenstein JH, Burger J, Jeitner CW, Amato G, Kolokotronis SO, Gochfeld M.

Biol Lett. 2010 Oct 23;6(5):692-5. doi: 10.1098/rsbl.2010.0156. Epub 2010 Apr 21.

PMID:
20410032
[PubMed - indexed for MEDLINE]
Free PMC Article

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