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Items: 1 to 20 of 23

1.

Probing the selectivity of β-hydroxylation reactions in non-ribosomal peptide synthesis using analytical ultracentrifugation.

Kokona B, Winesett ES, Nikolai von Krusenstiern A, Cryle MJ, Fairman R, Charkoudian LK.

Anal Biochem. 2016 Feb 15;495:42-51. doi: 10.1016/j.ab.2015.11.011. Epub 2015 Dec 2.

PMID:
26655390
2.

Studying polyglutamine aggregation in Caenorhabditis elegans using an analytical ultracentrifuge equipped with fluorescence detection.

Kokona B, May CA, Cunningham NR, Richmond L, Garcia FJ, Durante JC, Ulrich KM, Roberts CM, Link CD, Stafford WF, Laue TM, Fairman R.

Protein Sci. 2015 Dec 8. doi: 10.1002/pro.2854. [Epub ahead of print]

PMID:
26647351
3.

A multilaboratory comparison of calibration accuracy and the performance of external references in analytical ultracentrifugation.

Zhao H, Ghirlando R, Alfonso C, Arisaka F, Attali I, Bain DL, Bakhtina MM, Becker DF, Bedwell GJ, Bekdemir A, Besong TM, Birck C, Brautigam CA, Brennerman W, Byron O, Bzowska A, Chaires JB, Chaton CT, Cölfen H, Connaghan KD, Crowley KA, Curth U, Daviter T, Dean WL, Díez AI, Ebel C, Eckert DM, Eisele LE, Eisenstein E, England P, Escalante C, Fagan JA, Fairman R, Finn RM, Fischle W, de la Torre JG, Gor J, Gustafsson H, Hall D, Harding SE, Cifre JG, Herr AB, Howell EE, Isaac RS, Jao SC, Jose D, Kim SJ, Kokona B, Kornblatt JA, Kosek D, Krayukhina E, Krzizike D, Kusznir EA, Kwon H, Larson A, Laue TM, Le Roy A, Leech AP, Lilie H, Luger K, Luque-Ortega JR, Ma J, May CA, Maynard EL, Modrak-Wojcik A, Mok YF, Mücke N, Nagel-Steger L, Narlikar GJ, Noda M, Nourse A, Obsil T, Park CK, Park JK, Pawelek PD, Perdue EE, Perkins SJ, Perugini MA, Peterson CL, Peverelli MG, Piszczek G, Prag G, Prevelige PE, Raynal BD, Rezabkova L, Richter K, Ringel AE, Rosenberg R, Rowe AJ, Rufer AC, Scott DJ, Seravalli JG, Solovyova AS, Song R, Staunton D, Stoddard C, Stott K, Strauss HM, Streicher WW, Sumida JP, Swygert SG, Szczepanowski RH, Tessmer I, Toth RT 4th, Tripathy A, Uchiyama S, Uebel SF, Unzai S, Gruber AV, von Hippel PH, Wandrey C, Wang SH, Weitzel SE, Wielgus-Kutrowska B, Wolberger C, Wolff M, Wright E, Wu YS, Wubben JM, Schuck P.

PLoS One. 2015 May 21;10(5):e0126420. doi: 10.1371/journal.pone.0126420. eCollection 2015.

4.

Effect of helix length on the stability of the Lac repressor antiparallel coiled coil.

Little W, Robblee JP, Dahlberg CL, Kokona B, Fairman R.

Biopolymers. 2015 Jul;104(4):395-404. doi: 10.1002/bip.22676.

PMID:
25969365
5.

Testing the role of charge and structure on the stability of peptide-porphyrin complexes.

Taggart JC, Welch EZ, Mulqueen MF, Dioguardi VB, Cauer AG, Kokona B, Fairman R.

Biomacromolecules. 2014 Dec 8;15(12):4544-50. doi: 10.1021/bm5013426. Epub 2014 Nov 17.

PMID:
25371967
6.

Role of the coiled-coil structural motif in polyglutamine aggregation.

Kokona B, Rosenthal ZP, Fairman R.

Biochemistry. 2014 Nov 4;53(43):6738-46. doi: 10.1021/bi500449a. Epub 2014 Oct 24.

PMID:
25310851
7.

Effect of helical flanking sequences on the morphology of polyglutamine-containing fibrils.

Kokona B, Johnson KA, Fairman R.

Biochemistry. 2014 Nov 4;53(43):6747-53. doi: 10.1021/bi501066q. Epub 2014 Oct 24.

PMID:
25207433
8.

Effect of glutamate side chain length on intrahelical glutamate-lysine ion pairing interactions.

Cheng RP, Wang WR, Girinath P, Yang PA, Ahmad R, Li JH, Hart P, Kokona B, Fairman R, Kilpatrick C, Argiros A.

Biochemistry. 2012 Sep 11;51(36):7157-72. Epub 2012 Aug 29.

PMID:
22931137
9.

Characterization of mesoscale coiled-coil peptide-porphyrin complexes.

Pepe-Mooney BJ, Kokona B, Fairman R.

Biomacromolecules. 2011 Dec 12;12(12):4196-203. doi: 10.1021/bm201354m. Epub 2011 Nov 7.

PMID:
22029379
10.

Thermodynamic analysis of self-assembly in coiled-coil biomaterials.

Tsang BP, Bretscher HS, Kokona B, Manning RS, Fairman R.

Biochemistry. 2011 Oct 11;50(40):8548-58. doi: 10.1021/bi201038j. Epub 2011 Sep 14.

PMID:
21882866
11.

Positional effects on helical Ala-based peptides.

Cheng RP, Girinath P, Suzuki Y, Kuo HT, Hsu HC, Wang WR, Yang PA, Gullickson D, Wu CH, Koyack MJ, Chiu HP, Weng YJ, Hart P, Kokona B, Fairman R, Lin TE, Barrett O.

Biochemistry. 2010 Nov 2;49(43):9372-84. doi: 10.1021/bi101156j.

PMID:
20925317
12.

Polyglutamine fibrils are formed using a simple designed beta-hairpin model.

Smith MH, Miles TF, Sheehan M, Alfieri KN, Kokona B, Fairman R.

Proteins. 2010 Jun;78(8):1971-9. doi: 10.1002/prot.22713.

PMID:
20408173
13.

Effect of highly fluorinated amino acids on protein stability at a solvent-exposed position on an internal strand of protein G B1 domain.

Chiu HP, Kokona B, Fairman R, Cheng RP.

J Am Chem Soc. 2009 Sep 23;131(37):13192-3. doi: 10.1021/ja903631h.

PMID:
19711980
14.

Self assembly of coiled-coil peptide-porphyrin complexes.

Kokona B, Kim AM, Roden RC, Daniels JP, Pepe-Mooney BJ, Kovaric BC, de Paula JC, Johnson KA, Fairman R.

Biomacromolecules. 2009 Jun 8;10(6):1454-9. doi: 10.1021/bm9000553.

PMID:
19374349
15.

Design of a heterotetrameric coiled coil.

Root BC, Pellegrino LD, Crawford ED, Kokona B, Fairman R.

Protein Sci. 2009 Feb;18(2):329-36. doi: 10.1002/pro.30.

16.

The plasmid-encoded regulator activates factors conferring lysozyme resistance on enteropathogenic Escherichia coli strains.

Salinger N, Kokona B, Fairman R, Okeke IN.

Appl Environ Microbiol. 2009 Jan;75(1):275-80. doi: 10.1128/AEM.01734-08. Epub 2008 Nov 7.

17.

Probing the oligomeric assemblies of pea porphobilinogen synthase by analytical ultracentrifugation.

Kokona B, Rigotti DJ, Wasson AS, Lawrence SH, Jaffe EK, Fairman R.

Biochemistry. 2008 Oct 7;47(40):10649-56. doi: 10.1021/bi801128d. Epub 2008 Sep 17.

18.

Helix propensity of highly fluorinated amino acids.

Chiu HP, Suzuki Y, Gullickson D, Ahmad R, Kokona B, Fairman R, Cheng RP.

J Am Chem Soc. 2006 Dec 13;128(49):15556-7.

PMID:
17147342
19.

Self-assembly of peptide porphyrin complexes: toward the development of smart biomaterials.

Kovaric BC, Kokona B, Schwab AD, Twomey MA, de Paula JC, Fairman R.

J Am Chem Soc. 2006 Apr 5;128(13):4166-7.

PMID:
16568957
20.

Crystal structure of a glycyl radical enzyme from Archaeoglobus fulgidus.

Lehtiö L, Grossmann JG, Kokona B, Fairman R, Goldman A.

J Mol Biol. 2006 Mar 17;357(1):221-35. Epub 2006 Jan 3.

PMID:
16414072
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