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Results: 1 to 20 of 323

1.

Combining experimental evolution with next-generation sequencing: a powerful tool to study adaptation from standing genetic variation.

Schlötterer C, Kofler R, Versace E, Tobler R, Franssen SU.

Heredity (Edinb). 2014 Oct 1;0. doi: 10.1038/hdy.2014.86. [Epub ahead of print] Review.

PMID:
25269380
[PubMed - as supplied by publisher]
2.

C10ORF10/DEPP, a transcriptional target of FOXO3, regulates ROS-sensitivity in human neuroblastoma.

Salcher S, Hagenbuchner J, Geiger K, Seiter MA, Rainer J, Kofler R, Hermann M, Kiechl-Kohlendorfer U, Ausserlechner MJ, Obexer P.

Mol Cancer. 2014 Sep 28;13(1):224. doi: 10.1186/1476-4598-13-224.

PMID:
25261981
[PubMed - in process]
Free PMC Article
3.

Sequencing pools of individuals - mining genome-wide polymorphism data without big funding.

Schlötterer C, Tobler R, Kofler R, Nolte V.

Nat Rev Genet. 2014 Nov;15(11):749-63. doi: 10.1038/nrg3803. Epub 2014 Sep 23.

PMID:
25246196
[PubMed - in process]
4.

The synthetic glucocorticoids prednisolone and dexamethasone regulate the same genes in acute lymphoblastic leukemia cells.

Bindreither D, Ecker S, Gschirr B, Kofler A, Kofler R, Rainer J.

BMC Genomics. 2014 Aug 7;15:662. doi: 10.1186/1471-2164-15-662.

PMID:
25103118
[PubMed - in process]
Free PMC Article
5.

Development of a multipurpose GATEWAY-based lentiviral tetracycline-regulated conditional RNAi system (GLTR).

Sigl R, Ploner C, Shivalingaiah G, Kofler R, Geley S.

PLoS One. 2014 May 19;9(5):e97764. doi: 10.1371/journal.pone.0097764. eCollection 2014.

PMID:
24841113
[PubMed - in process]
Free PMC Article
6.

Differential neuronal targeting of a new and two known calcium channel β4 subunit splice variants correlates with their regulation of gene expression.

Etemad S, Obermair GJ, Bindreither D, Benedetti A, Stanika R, Di Biase V, Burtscher V, Koschak A, Kofler R, Geley S, Wille A, Lusser A, Flockerzi V, Flucher BE.

J Neurosci. 2014 Jan 22;34(4):1446-61. doi: 10.1523/JNEUROSCI.3935-13.2014.

PMID:
24453333
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Translational profiling in childhood acute lymphoblastic leukemia: no evidence for glucocorticoid regulation of mRNA translation.

Aneichyk T, Bindreither D, Mantinger C, Grazio D, Goetsch K, Kofler R, Rainer J.

BMC Genomics. 2013 Dec 1;14:844. doi: 10.1186/1471-2164-14-844.

PMID:
24289529
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

A guide for the design of evolve and resequencing studies.

Kofler R, Schlötterer C.

Mol Biol Evol. 2014 Feb;31(2):474-83. doi: 10.1093/molbev/mst221. Epub 2013 Nov 9.

PMID:
24214537
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Massive habitat-specific genomic response in D. melanogaster populations during experimental evolution in hot and cold environments.

Tobler R, Franssen SU, Kofler R, Orozco-Terwengel P, Nolte V, Hermisson J, Schlötterer C.

Mol Biol Evol. 2014 Feb;31(2):364-75. doi: 10.1093/molbev/mst205. Epub 2013 Oct 22.

PMID:
24150039
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Variability in functional p53 reactivation by PRIMA-1(Met)/APR-246 in Ewing sarcoma.

Aryee DN, Niedan S, Ban J, Schwentner R, Muehlbacher K, Kauer M, Kofler R, Kovar H.

Br J Cancer. 2013 Nov 12;109(10):2696-704. doi: 10.1038/bjc.2013.635. Epub 2013 Oct 15.

PMID:
24129240
[PubMed - indexed for MEDLINE]
11.

Suppression of FOXO1 is responsible for a growth regulatory repressive transcriptional sub-signature of EWS-FLI1 in Ewing sarcoma.

Niedan S, Kauer M, Aryee DN, Kofler R, Schwentner R, Meier A, Pötschger U, Kontny U, Kovar H.

Oncogene. 2014 Jul 24;33(30):3927-38. doi: 10.1038/onc.2013.361. Epub 2013 Sep 2.

PMID:
23995784
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Chinese hamster genome sequenced from sorted chromosomes.

Brinkrolf K, Rupp O, Laux H, Kollin F, Ernst W, Linke B, Kofler R, Romand S, Hesse F, Budach WE, Galosy S, Müller D, Noll T, Wienberg J, Jostock T, Leonard M, Grillari J, Tauch A, Goesmann A, Helk B, Mott JE, Pühler A, Borth N.

Nat Biotechnol. 2013 Aug;31(8):694-5. doi: 10.1038/nbt.2645. No abstract available.

PMID:
23929341
[PubMed - indexed for MEDLINE]
13.

The p27-Skp2 axis mediates glucocorticoid-induced cell cycle arrest in T-lymphoma cells.

Kullmann MK, Grubbauer C, Goetsch K, Jäkel H, Podmirseg SR, Trockenbacher A, Ploner C, Cato AC, Weiss C, Kofler R, Hengst L.

Cell Cycle. 2013 Aug 15;12(16):2625-35. doi: 10.4161/cc.25622. Epub 2013 Jul 9.

PMID:
23907123
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Microarray and deep sequencing cross-platform analysis of the mirRNome and isomiR variation in response to epidermal growth factor.

Llorens F, Hummel M, Pantano L, Pastor X, Vivancos A, Castillo E, Mattlin H, Ferrer A, Ingham M, Noguera M, Kofler R, Dohm JC, Pluvinet R, Bayés M, Himmelbauer H, del Rio JA, Martí E, Sumoy L.

BMC Genomics. 2013 Jun 1;14:371. doi: 10.1186/1471-2164-14-371.

PMID:
23724959
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

CLP1 links tRNA metabolism to progressive motor-neuron loss.

Hanada T, Weitzer S, Mair B, Bernreuther C, Wainger BJ, Ichida J, Hanada R, Orthofer M, Cronin SJ, Komnenovic V, Minis A, Sato F, Mimata H, Yoshimura A, Tamir I, Rainer J, Kofler R, Yaron A, Eggan KC, Woolf CJ, Glatzel M, Herbst R, Martinez J, Penninger JM.

Nature. 2013 Mar 28;495(7442):474-80. doi: 10.1038/nature11923. Epub 2013 Mar 10.

PMID:
23474986
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Pool-hmm: a Python program for estimating the allele frequency spectrum and detecting selective sweeps from next generation sequencing of pooled samples.

Boitard S, Kofler R, Françoise P, Robelin D, Schlötterer C, Futschik A.

Mol Ecol Resour. 2013 Mar;13(2):337-40. doi: 10.1111/1755-0998.12063. Epub 2013 Jan 11.

PMID:
23311589
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Genome-wide patterns of natural variation reveal strong selective sweeps and ongoing genomic conflict in Drosophila mauritiana.

Nolte V, Pandey RV, Kofler R, Schlötterer C.

Genome Res. 2013 Jan;23(1):99-110. doi: 10.1101/gr.139873.112. Epub 2012 Oct 10.

PMID:
23051690
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Genome-wide patterns of latitudinal differentiation among populations of Drosophila melanogaster from North America.

Fabian DK, Kapun M, Nolte V, Kofler R, Schmidt PS, Schlötterer C, Flatt T.

Mol Ecol. 2012 Oct;21(19):4748-69. doi: 10.1111/j.1365-294X.2012.05731.x. Epub 2012 Aug 22.

PMID:
22913798
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

"Bam," a novel glucocorticoid-induced BH3-only transcript from the BCL2L11/Bim locus, does not appear to be translated.

Mansha M, Hussain A, Kofler A, Grubbauer C, Goetsch K, Ploner C, Kofler R.

Leuk Lymphoma. 2013 Feb;54(2):353-8. doi: 10.3109/10428194.2012.708928. Epub 2012 Sep 6.

PMID:
22762551
[PubMed - indexed for MEDLINE]
20.

Adaptation of Drosophila to a novel laboratory environment reveals temporally heterogeneous trajectories of selected alleles.

Orozco-terWengel P, Kapun M, Nolte V, Kofler R, Flatt T, Schlötterer C.

Mol Ecol. 2012 Oct;21(20):4931-41. doi: 10.1111/j.1365-294X.2012.05673.x. Epub 2012 Jun 21.

PMID:
22726122
[PubMed - indexed for MEDLINE]
Free PMC Article

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