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Results: 1 to 20 of 46

1.

Advancing the microbiome research community.

Huttenhower C, Knight R, Brown CT, Caporaso JG, Clemente JC, Gevers D, Franzosa EA, Kelley ST, Knights D, Ley RE, Mahurkar A, Ravel J; Scientists for Advancement of Microbiome Research, White O.

Cell. 2014 Oct 9;159(2):227-30. doi: 10.1016/j.cell.2014.09.022.

PMID:
25303518
[PubMed - in process]
Free PMC Article
2.

Rethinking "enterotypes".

Knights D, Ward TL, McKinlay CE, Miller H, Gonzalez A, McDonald D, Knight R.

Cell Host Microbe. 2014 Oct 8;16(4):433-7. doi: 10.1016/j.chom.2014.09.013.

PMID:
25299329
[PubMed - in process]
3.

Multi-omics analysis of inflammatory bowel disease.

Huang H, Vangay P, McKinlay CE, Knights D.

Immunol Lett. 2014 Dec;162(2PA):62-68. doi: 10.1016/j.imlet.2014.07.014. Epub 2014 Aug 15. Review.

PMID:
25131220
[PubMed - as supplied by publisher]
4.

The treatment-naive microbiome in new-onset Crohn's disease.

Gevers D, Kugathasan S, Denson LA, Vázquez-Baeza Y, Van Treuren W, Ren B, Schwager E, Knights D, Song SJ, Yassour M, Morgan XC, Kostic AD, Luo C, González A, McDonald D, Haberman Y, Walters T, Baker S, Rosh J, Stephens M, Heyman M, Markowitz J, Baldassano R, Griffiths A, Sylvester F, Mack D, Kim S, Crandall W, Hyams J, Huttenhower C, Knight R, Xavier RJ.

Cell Host Microbe. 2014 Mar 12;15(3):382-92. doi: 10.1016/j.chom.2014.02.005.

PMID:
24629344
[PubMed - indexed for MEDLINE]
5.

The Liverpool Care Pathway for the dying: what went wrong?

Knights D, Wood D, Barclay S.

Br J Gen Pract. 2013 Oct;63(615):509-10. doi: 10.3399/bjgp13X673559. No abstract available.

PMID:
24152449
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system.

Metcalf JL, Wegener Parfrey L, Gonzalez A, Lauber CL, Knights D, Ackermann G, Humphrey GC, Gebert MJ, Van Treuren W, Berg-Lyons D, Keepers K, Guo Y, Bullard J, Fierer N, Carter DO, Knight R.

Elife. 2013 Oct 15;2:e01104. doi: 10.7554/eLife.01104.

PMID:
24137541
[PubMed - in process]
Free PMC Article
7.

Advances in inflammatory bowel disease pathogenesis: linking host genetics and the microbiome.

Knights D, Lassen KG, Xavier RJ.

Gut. 2013 Oct;62(10):1505-10. doi: 10.1136/gutjnl-2012-303954. Review.

PMID:
24037875
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Do health partnerships with organisations in lower income countries benefit the UK partner? A review of the literature.

Jones FA, Knights DP, Sinclair VF, Baraitser P.

Global Health. 2013 Aug 30;9:38. doi: 10.1186/1744-8603-9-38. Review.

PMID:
24001319
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences.

Langille MG, Zaneveld J, Caporaso JG, McDonald D, Knights D, Reyes JA, Clemente JC, Burkepile DE, Vega Thurber RL, Knight R, Beiko RG, Huttenhower C.

Nat Biotechnol. 2013 Sep;31(9):814-21. doi: 10.1038/nbt.2676. Epub 2013 Aug 25.

PMID:
23975157
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Evaluation of a multisite educational intervention to improve mobilization of older patients in hospital: protocol for mobilization of vulnerable elders in Ontario (MOVE ON).

Liu B, Almaawiy U, Moore JE, Chan WH, Straus SE; MOVE ON Team.

Implement Sci. 2013 Jul 3;8:76. doi: 10.1186/1748-5908-8-76.

PMID:
23822563
[PubMed - in process]
Free PMC Article
11.

Anal gas evacuation and colonic microbiota in patients with flatulence: effect of diet.

Manichanh C, Eck A, Varela E, Roca J, Clemente JC, González A, Knights D, Knight R, Estrella S, Hernandez C, Guyonnet D, Accarino A, Santos J, Malagelada JR, Guarner F, Azpiroz F.

Gut. 2014 Mar;63(3):401-8. doi: 10.1136/gutjnl-2012-303013. Epub 2013 Jun 13.

PMID:
23766444
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Cohabiting family members share microbiota with one another and with their dogs.

Song SJ, Lauber C, Costello EK, Lozupone CA, Humphrey G, Berg-Lyons D, Caporaso JG, Knights D, Clemente JC, Nakielny S, Gordon JI, Fierer N, Knight R.

Elife. 2013 Apr 16;2:e00458. doi: 10.7554/eLife.00458.

PMID:
23599893
[PubMed - in process]
Free PMC Article
13.

Gut microbiomes of Malawian twin pairs discordant for kwashiorkor.

Smith MI, Yatsunenko T, Manary MJ, Trehan I, Mkakosya R, Cheng J, Kau AL, Rich SS, Concannon P, Mychaleckyj JC, Liu J, Houpt E, Li JV, Holmes E, Nicholson J, Knights D, Ursell LK, Knight R, Gordon JI.

Science. 2013 Feb 1;339(6119):548-54. doi: 10.1126/science.1229000. Epub 2013 Jan 30.

PMID:
23363771
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets.

Koren O, Knights D, Gonzalez A, Waldron L, Segata N, Knight R, Huttenhower C, Ley RE.

PLoS Comput Biol. 2013;9(1):e1002863. doi: 10.1371/journal.pcbi.1002863. Epub 2013 Jan 10.

PMID:
23326225
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Insights from characterizing extinct human gut microbiomes.

Tito RY, Knights D, Metcalf J, Obregon-Tito AJ, Cleeland L, Najar F, Roe B, Reinhard K, Sobolik K, Belknap S, Foster M, Spicer P, Knight R, Lewis CM Jr.

PLoS One. 2012;7(12):e51146. doi: 10.1371/journal.pone.0051146. Epub 2012 Dec 12.

PMID:
23251439
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Nurture trumps nature in a longitudinal survey of salivary bacterial communities in twins from early adolescence to early adulthood.

Stahringer SS, Clemente JC, Corley RP, Hewitt J, Knights D, Walters WA, Knight R, Krauter KS.

Genome Res. 2012 Nov;22(11):2146-52. doi: 10.1101/gr.140608.112. Epub 2012 Oct 12.

PMID:
23064750
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Analysis of the gut microbiota in the old order Amish and its relation to the metabolic syndrome.

Zupancic ML, Cantarel BL, Liu Z, Drabek EF, Ryan KA, Cirimotich S, Jones C, Knight R, Walters WA, Knights D, Mongodin EF, Horenstein RB, Mitchell BD, Steinle N, Snitker S, Shuldiner AR, Fraser CM.

PLoS One. 2012;7(8):e43052. doi: 10.1371/journal.pone.0043052. Epub 2012 Aug 15.

PMID:
22905200
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat.

Harris JK, Caporaso JG, Walker JJ, Spear JR, Gold NJ, Robertson CE, Hugenholtz P, Goodrich J, McDonald D, Knights D, Marshall P, Tufo H, Knight R, Pace NR.

ISME J. 2013 Jan;7(1):50-60. doi: 10.1038/ismej.2012.79. Epub 2012 Jul 26.

PMID:
22832344
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Human gut microbiome viewed across age and geography.

Yatsunenko T, Rey FE, Manary MJ, Trehan I, Dominguez-Bello MG, Contreras M, Magris M, Hidalgo G, Baldassano RN, Anokhin AP, Heath AC, Warner B, Reeder J, Kuczynski J, Caporaso JG, Lozupone CA, Lauber C, Clemente JC, Knights D, Knight R, Gordon JI.

Nature. 2012 May 9;486(7402):222-7. doi: 10.1038/nature11053.

PMID:
22699611
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

A framework for human microbiome research.

Human Microbiome Project Consortium.

Nature. 2012 Jun 13;486(7402):215-21. doi: 10.1038/nature11209.

PMID:
22699610
[PubMed - indexed for MEDLINE]
Free PMC Article

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