Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 50

1.

The avian cell line AGE1.CR.pIX characterized by metabolic flux analysis.

Lohr V, Hädicke O, Genzel Y, Jordan I, Büntemeyer H, Klamt S, Reichl U.

BMC Biotechnol. 2014 Jul 30;14:72. doi: 10.1186/1472-6750-14-72.

PMID:
25077436
[PubMed - in process]
Free PMC Article
2.

A model integration approach linking signalling and gene-regulatory logic with kinetic metabolic models.

Ryll A, Bucher J, Bonin A, Bongard S, Gonçalves E, Saez-Rodriguez J, Niklas J, Klamt S.

Biosystems. 2014 Jul 23. pii: S0303-2647(14)00106-3. doi: 10.1016/j.biosystems.2014.07.002. [Epub ahead of print]

PMID:
25063553
[PubMed - as supplied by publisher]
3.

Complication and mortality rate after percutaneous endoscopic gastrostomy are low and indication-dependent.

Schneider AS, Schettler A, Markowski A, Luettig B, Kaufmann B, Klamt S, Lenzen H, Momma M, Seipt C, Lankisch T, Negm AA; *Conference presentation: 36th ESPEN Congress in Leipzig, Germany on August 31st – September 3rd, 2013.

Scand J Gastroenterol. 2014 Jul;49(7):891-8. doi: 10.3109/00365521.2014.916343. Epub 2014 Jun 4.

PMID:
24896841
[PubMed - in process]
4.

Enumeration of smallest intervention strategies in genome-scale metabolic networks.

von Kamp A, Klamt S.

PLoS Comput Biol. 2014 Jan;10(1):e1003378. doi: 10.1371/journal.pcbi.1003378. Epub 2014 Jan 2.

PMID:
24391481
[PubMed - in process]
Free PMC Article
5.

SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools.

Chaouiya C, Bérenguier D, Keating SM, Naldi A, van Iersel MP, Rodriguez N, Dräger A, Büchel F, Cokelaer T, Kowal B, Wicks B, Gonçalves E, Dorier J, Page M, Monteiro PT, von Kamp A, Xenarios I, de Jong H, Hucka M, Klamt S, Thieffry D, Le Novère N, Saez-Rodriguez J, Helikar T.

BMC Syst Biol. 2013 Dec 10;7:135. doi: 10.1186/1752-0509-7-135.

PMID:
24321545
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Comparison and improvement of algorithms for computing minimal cut sets.

Jungreuthmayer C, Nair G, Klamt S, Zanghellini J.

BMC Bioinformatics. 2013 Nov 6;14:318. doi: 10.1186/1471-2105-14-318.

PMID:
24191903
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

In silico profiling of Escherichia coli and Saccharomyces cerevisiae as terpenoid factories.

Gruchattka E, Hädicke O, Klamt S, Schütz V, Kayser O.

Microb Cell Fact. 2013 Sep 23;12:84. doi: 10.1186/1475-2859-12-84.

PMID:
24059635
[PubMed - in process]
Free PMC Article
8.

Detecting and removing inconsistencies between experimental data and signaling network topologies using integer linear programming on interaction graphs.

Melas IN, Samaga R, Alexopoulos LG, Klamt S.

PLoS Comput Biol. 2013;9(9):e1003204. doi: 10.1371/journal.pcbi.1003204. Epub 2013 Sep 5.

PMID:
24039561
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Reconstruction of large-scale regulatory networks based on perturbation graphs and transitive reduction: improved methods and their evaluation.

Pinna A, Heise S, Flassig RJ, de la Fuente A, Klamt S.

BMC Syst Biol. 2013 Aug 8;7:73. doi: 10.1186/1752-0509-7-73.

PMID:
23924435
[PubMed - indexed for MEDLINE]
Free Article
10.

Modeling approaches for qualitative and semi-quantitative analysis of cellular signaling networks.

Samaga R, Klamt S.

Cell Commun Signal. 2013 Jun 26;11(1):43. doi: 10.1186/1478-811X-11-43.

PMID:
23803171
[PubMed]
Free PMC Article
11.

Evaluating differences of metabolic performances: statistical methods and their application to animal cell cultivations.

Hädicke O, Lohr V, Genzel Y, Reichl U, Klamt S.

Biotechnol Bioeng. 2013 Oct;110(10):2633-42. doi: 10.1002/bit.24926. Epub 2013 Apr 30.

PMID:
23568808
[PubMed - indexed for MEDLINE]
12.

Bridging the layers: towards integration of signal transduction, regulation and metabolism into mathematical models.

Gonçalves E, Bucher J, Ryll A, Niklas J, Mauch K, Klamt S, Rocha M, Saez-Rodriguez J.

Mol Biosyst. 2013 Jul;9(7):1576-83. doi: 10.1039/c3mb25489e. Epub 2013 Mar 25. Review.

PMID:
23525368
[PubMed - indexed for MEDLINE]
13.

An effective framework for reconstructing gene regulatory networks from genetical genomics data.

Flassig RJ, Heise S, Sundmacher K, Klamt S.

Bioinformatics. 2013 Jan 15;29(2):246-54. doi: 10.1093/bioinformatics/bts679. Epub 2012 Nov 21.

PMID:
23175757
[PubMed - indexed for MEDLINE]
Free Article
14.

An integrative model links multiple inputs and signaling pathways to the onset of DNA synthesis in hepatocytes.

Huard J, Mueller S, Gilles ED, Klingmüller U, Klamt S.

FEBS J. 2012 Sep;279(18):3290-313. doi: 10.1111/j.1742-4658.2012.08572.x. Epub 2012 Apr 10.

PMID:
22443451
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Minimal cut sets in a metabolic network are elementary modes in a dual network.

Ballerstein K, von Kamp A, Klamt S, Haus UU.

Bioinformatics. 2012 Feb 1;28(3):381-7. doi: 10.1093/bioinformatics/btr674. Epub 2011 Dec 21.

PMID:
22190691
[PubMed - indexed for MEDLINE]
Free Article
16.

Large-scale network models of IL-1 and IL-6 signalling and their hepatocellular specification.

Ryll A, Samaga R, Schaper F, Alexopoulos LG, Klamt S.

Mol Biosyst. 2011 Dec;7(12):3253-70. doi: 10.1039/c1mb05261f. Epub 2011 Oct 3.

PMID:
21968890
[PubMed - indexed for MEDLINE]
17.

Metabolic network modeling of redox balancing and biohydrogen production in purple nonsulfur bacteria.

Hädicke O, Grammel H, Klamt S.

BMC Syst Biol. 2011 Sep 25;5:150. doi: 10.1186/1752-0509-5-150.

PMID:
21943387
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Special issue: integration of OMICs datasets into metabolic pathway analysis.

Kaleta C, de Figueiredo LF, Heiland I, Klamt S, Schuster S.

Biosystems. 2011 Aug;105(2):107-8. doi: 10.1016/j.biosystems.2011.05.008. Epub 2011 May 18. No abstract available.

PMID:
21619911
[PubMed - indexed for MEDLINE]
19.

An application programming interface for CellNetAnalyzer.

Klamt S, von Kamp A.

Biosystems. 2011 Aug;105(2):162-8. doi: 10.1016/j.biosystems.2011.02.002. Epub 2011 Feb 21.

PMID:
21315797
[PubMed - indexed for MEDLINE]
20.

From binary to multivalued to continuous models: the lac operon as a case study.

Franke R, Theis FJ, Klamt S.

J Integr Bioinform. 2010 Dec 14;7(1). doi: 10.2390/biecoll-jib-2010-151.

PMID:
21200084
[PubMed - indexed for MEDLINE]

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk