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Results: 1 to 20 of 84

1.

Systems-based analysis of the Sarcocystis neurona genome identifies pathways that contribute to a heteroxenous life cycle.

Blazejewski T, Nursimulu N, Pszenny V, Dangoudoubiyam S, Namasivayam S, Chiasson MA, Chessman K, Tonkin M, Swapna LS, Hung SS, Bridgers J, Ricklefs SM, Boulanger MJ, Dubey JP, Porcella SF, Kissinger JC, Howe DK, Grigg ME, Parkinson J.

MBio. 2015 Feb 10;6(1). pii: e02445-14. doi: 10.1128/mBio.02445-14.

2.

Comparative transcriptomics and metabolomics in a rhesus macaque drug administration study.

Lee KJ, Yin W, Arafat D, Tang Y, Uppal K, Tran V, Cabrera-Mora M, Lapp S, Moreno A, Meyer E, DeBarry JD, Pakala S, Nayak V, Kissinger JC, Jones DP, Galinski M, Styczynski MP, Gibson G.

Front Cell Dev Biol. 2014 Oct 8;2:54. doi: 10.3389/fcell.2014.00054. eCollection 2014.

3.

Metabolomics in the fight against malaria.

Salinas JL, Kissinger JC, Jones DP, Galinski MR.

Mem Inst Oswaldo Cruz. 2014 Aug;109(5):589-97.

4.

The Cryptosporidium parvum ApiAP2 gene family: insights into the evolution of apicomplexan AP2 regulatory systems.

Oberstaller J, Pumpalova Y, Schieler A, Llinás M, Kissinger JC.

Nucleic Acids Res. 2014 Jul;42(13):8271-84. doi: 10.1093/nar/gku500. Epub 2014 Jun 23.

5.

Standardized metadata for human pathogen/vector genomic sequences.

Dugan VG, Emrich SJ, Giraldo-Calderón GI, Harb OS, Newman RM, Pickett BE, Schriml LM, Stockwell TB, Stoeckert CJ Jr, Sullivan DE, Singh I, Ward DV, Yao A, Zheng J, Barrett T, Birren B, Brinkac L, Bruno VM, Caler E, Chapman S, Collins FH, Cuomo CA, Di Francesco V, Durkin S, Eppinger M, Feldgarden M, Fraser C, Fricke WF, Giovanni M, Henn MR, Hine E, Hotopp JD, Karsch-Mizrachi I, Kissinger JC, Lee EM, Mathur P, Mongodin EF, Murphy CI, Myers G, Neafsey DE, Nelson KE, Nierman WC, Puzak J, Rasko D, Roos DS, Sadzewicz L, Silva JC, Sobral B, Squires RB, Stevens RL, Tallon L, Tettelin H, Wentworth D, White O, Will R, Wortman J, Zhang Y, Scheuermann RH.

PLoS One. 2014 Jun 17;9(6):e99979. doi: 10.1371/journal.pone.0099979. eCollection 2014.

6.

A survey of innovation through duplication in the reduced genomes of twelve parasites.

DeBarry JD, Kissinger JC.

PLoS One. 2014 Jun 11;9(6):e99213. doi: 10.1371/journal.pone.0099213. eCollection 2014.

7.

Genome-wide upstream motif analysis of Cryptosporidium parvum genes clustered by expression profile.

Oberstaller J, Joseph SJ, Kissinger JC.

BMC Genomics. 2013 Jul 29;14:516. doi: 10.1186/1471-2164-14-516.

8.

Malaria diagnostics and surveillance in the post-genomic era.

Lucchi NW, Oberstaller J, Kissinger JC, Udhayakumar V.

Public Health Genomics. 2013;16(1-2):37-43. doi: 10.1159/000345607. Epub 2013 Mar 18.

PMID:
23548716
9.

Real-time loop-mediated isothermal amplification (RealAmp) for the species-specific identification of Plasmodium vivax.

Patel JC, Oberstaller J, Xayavong M, Narayanan J, DeBarry JD, Srinivasamoorthy G, Villegas L, Escalante AA, DaSilva A, Peterson DS, Barnwell JW, Kissinger JC, Udhayakumar V, Lucchi NW.

PLoS One. 2013;8(1):e54986. doi: 10.1371/journal.pone.0054986. Epub 2013 Jan 22.

10.

EuPathDB: the eukaryotic pathogen database.

Aurrecoechea C, Barreto A, Brestelli J, Brunk BP, Cade S, Doherty R, Fischer S, Gajria B, Gao X, Gingle A, Grant G, Harb OS, Heiges M, Hu S, Iodice J, Kissinger JC, Kraemer ET, Li W, Pinney DF, Pitts B, Roos DS, Srinivasamoorthy G, Stoeckert CJ Jr, Wang H, Warrenfeltz S.

Nucleic Acids Res. 2013 Jan;41(Database issue):D684-91. doi: 10.1093/nar/gks1113. Epub 2012 Nov 21.

11.

SchistoDB: an updated genome resource for the three key schistosomes of humans.

Zerlotini A, Aguiar ER, Yu F, Xu H, Li Y, Young ND, Gasser RB, Protasio AV, Berriman M, Roos DS, Kissinger JC, Oliveira G.

Nucleic Acids Res. 2013 Jan;41(Database issue):D728-31. doi: 10.1093/nar/gks1087. Epub 2012 Nov 17.

12.

A 43-nucleotide U-rich element in 3'-untranslated region of large number of Trypanosoma cruzi transcripts is important for mRNA abundance in intracellular amastigotes.

Li ZH, De Gaudenzi JG, Alvarez VE, Mendiondo N, Wang H, Kissinger JC, Frasch AC, Docampo R.

J Biol Chem. 2012 Jun 1;287(23):19058-69. doi: 10.1074/jbc.M111.338699. Epub 2012 Apr 12.

13.

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity.

Wang Y, Tang H, Debarry JD, Tan X, Li J, Wang X, Lee TH, Jin H, Marler B, Guo H, Kissinger JC, Paterson AH.

Nucleic Acids Res. 2012 Apr;40(7):e49. doi: 10.1093/nar/gkr1293. Epub 2012 Jan 4.

14.

FungiDB: an integrated functional genomics database for fungi.

Stajich JE, Harris T, Brunk BP, Brestelli J, Fischer S, Harb OS, Kissinger JC, Li W, Nayak V, Pinney DF, Stoeckert CJ Jr, Roos DS.

Nucleic Acids Res. 2012 Jan;40(Database issue):D675-81. doi: 10.1093/nar/gkr918. Epub 2011 Nov 7.

15.

Recombination in avian gamma-coronavirus infectious bronchitis virus.

Thor SW, Hilt DA, Kissinger JC, Paterson AH, Jackwood MW.

Viruses. 2011 Sep;3(9):1777-99. doi: 10.3390/v3091777. Epub 2011 Sep 23.

16.

Changes in nonstructural protein 3 are associated with attenuation in avian coronavirus infectious bronchitis virus.

Phillips JE, Jackwood MW, McKinley ET, Thor SW, Hilt DA, Acevedol ND, Williams SM, Kissinger JC, Paterson AH, Robertson JS, Lemke C.

Virus Genes. 2012 Feb;44(1):63-74. doi: 10.1007/s11262-011-0668-7. Epub 2011 Sep 10.

PMID:
21909766
17.

Genome cartography: charting the apicomplexan genome.

Kissinger JC, DeBarry J.

Trends Parasitol. 2011 Aug;27(8):345-54. doi: 10.1016/j.pt.2011.03.006. Epub 2011 Jul 19. Review.

18.

The Strategies WDK: a graphical search interface and web development kit for functional genomics databases.

Fischer S, Aurrecoechea C, Brunk BP, Gao X, Harb OS, Kraemer ET, Pennington C, Treatman C, Kissinger JC, Roos DS, Stoeckert CJ.

Database (Oxford). 2011 Jun 23;2011:bar027. doi: 10.1093/database/bar027. Print 2011.

19.

Attenuated live vaccine usage affects accurate measures of virus diversity and mutation rates in avian coronavirus infectious bronchitis virus.

McKinley ET, Jackwood MW, Hilt DA, Kissinger JC, Robertson JS, Lemke C, Paterson AH.

Virus Res. 2011 Jun;158(1-2):225-34. doi: 10.1016/j.virusres.2011.04.006. Epub 2011 Apr 22.

PMID:
21539870
20.

Applied genomics: data mining reveals species-specific malaria diagnostic targets more sensitive than 18S rRNA.

Demas A, Oberstaller J, DeBarry J, Lucchi NW, Srinivasamoorthy G, Sumari D, Kabanywanyi AM, Villegas L, Escalante AA, Kachur SP, Barnwell JW, Peterson DS, Udhayakumar V, Kissinger JC.

J Clin Microbiol. 2011 Jul;49(7):2411-8. doi: 10.1128/JCM.02603-10. Epub 2011 Apr 27.

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