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Items: 1 to 20 of 90

1.

An unsettling picture emerges from population genomic studies of Plasmodium vivax.

Kissinger JC.

Nat Genet. 2016 Jul 27;48(8):825-6. doi: 10.1038/ng.3630.

PMID:
27463397
2.
3.

The Genome of Haemoproteus tartakovskyi and Its Relationship to Human Malaria Parasites.

Bensch S, Canbäck B, DeBarry JD, Johansson T, Hellgren O, Kissinger JC, Palinauskas V, Videvall E, Valkiūnas G.

Genome Biol Evol. 2016 May 12;8(5):1361-73. doi: 10.1093/gbe/evw081.

4.

Local admixture of amplified and diversified secreted pathogenesis determinants shapes mosaic Toxoplasma gondii genomes.

Lorenzi H, Khan A, Behnke MS, Namasivayam S, Swapna LS, Hadjithomas M, Karamycheva S, Pinney D, Brunk BP, Ajioka JW, Ajzenberg D, Boothroyd JC, Boyle JP, Dardé ML, Diaz-Miranda MA, Dubey JP, Fritz HM, Gennari SM, Gregory BD, Kim K, Saeij JP, Su C, White MW, Zhu XQ, Howe DK, Rosenthal BM, Grigg ME, Parkinson J, Liu L, Kissinger JC, Roos DS, Sibley LD.

Nat Commun. 2016 Jan 7;7:10147. doi: 10.1038/ncomms10147.

5.

Neglected Tropical Diseases in the Post-Genomic Era.

Buscaglia CA, Kissinger JC, Agüero F.

Trends Genet. 2015 Oct;31(10):539-55. doi: 10.1016/j.tig.2015.06.002. Review.

PMID:
26450337
6.

From genome-scale data to models of infectious disease: A Bayesian network-based strategy to drive model development.

Yin W, Kissinger JC, Moreno A, Galinski MR, Styczynski MP.

Math Biosci. 2015 Dec;270(Pt B):156-68. doi: 10.1016/j.mbs.2015.06.006. Epub 2015 Jun 17.

PMID:
26093035
7.

Systems-based analysis of the Sarcocystis neurona genome identifies pathways that contribute to a heteroxenous life cycle.

Blazejewski T, Nursimulu N, Pszenny V, Dangoudoubiyam S, Namasivayam S, Chiasson MA, Chessman K, Tonkin M, Swapna LS, Hung SS, Bridgers J, Ricklefs SM, Boulanger MJ, Dubey JP, Porcella SF, Kissinger JC, Howe DK, Grigg ME, Parkinson J.

MBio. 2015 Feb 10;6(1). pii: e02445-14. doi: 10.1128/mBio.02445-14.

8.

Comparative transcriptomics and metabolomics in a rhesus macaque drug administration study.

Lee KJ, Yin W, Arafat D, Tang Y, Uppal K, Tran V, Cabrera-Mora M, Lapp S, Moreno A, Meyer E, DeBarry JD, Pakala S, Nayak V, Kissinger JC, Jones DP, Galinski M, Styczynski MP, Gibson G.

Front Cell Dev Biol. 2014 Oct 8;2:54. doi: 10.3389/fcell.2014.00054. eCollection 2014.

9.

Metabolomics in the fight against malaria.

Salinas JL, Kissinger JC, Jones DP, Galinski MR.

Mem Inst Oswaldo Cruz. 2014 Aug;109(5):589-97. Review.

10.

The Cryptosporidium parvum ApiAP2 gene family: insights into the evolution of apicomplexan AP2 regulatory systems.

Oberstaller J, Pumpalova Y, Schieler A, Llinás M, Kissinger JC.

Nucleic Acids Res. 2014 Jul;42(13):8271-84. doi: 10.1093/nar/gku500. Epub 2014 Jun 23.

11.

Standardized metadata for human pathogen/vector genomic sequences.

Dugan VG, Emrich SJ, Giraldo-Calderón GI, Harb OS, Newman RM, Pickett BE, Schriml LM, Stockwell TB, Stoeckert CJ Jr, Sullivan DE, Singh I, Ward DV, Yao A, Zheng J, Barrett T, Birren B, Brinkac L, Bruno VM, Caler E, Chapman S, Collins FH, Cuomo CA, Di Francesco V, Durkin S, Eppinger M, Feldgarden M, Fraser C, Fricke WF, Giovanni M, Henn MR, Hine E, Hotopp JD, Karsch-Mizrachi I, Kissinger JC, Lee EM, Mathur P, Mongodin EF, Murphy CI, Myers G, Neafsey DE, Nelson KE, Nierman WC, Puzak J, Rasko D, Roos DS, Sadzewicz L, Silva JC, Sobral B, Squires RB, Stevens RL, Tallon L, Tettelin H, Wentworth D, White O, Will R, Wortman J, Zhang Y, Scheuermann RH.

PLoS One. 2014 Jun 17;9(6):e99979. doi: 10.1371/journal.pone.0099979. eCollection 2014.

12.

A survey of innovation through duplication in the reduced genomes of twelve parasites.

DeBarry JD, Kissinger JC.

PLoS One. 2014 Jun 11;9(6):e99213. doi: 10.1371/journal.pone.0099213. eCollection 2014.

13.

Genome-wide upstream motif analysis of Cryptosporidium parvum genes clustered by expression profile.

Oberstaller J, Joseph SJ, Kissinger JC.

BMC Genomics. 2013 Jul 29;14:516. doi: 10.1186/1471-2164-14-516.

14.

Malaria diagnostics and surveillance in the post-genomic era.

Lucchi NW, Oberstaller J, Kissinger JC, Udhayakumar V.

Public Health Genomics. 2013;16(1-2):37-43. doi: 10.1159/000345607. Epub 2013 Mar 18.

15.

Real-time loop-mediated isothermal amplification (RealAmp) for the species-specific identification of Plasmodium vivax.

Patel JC, Oberstaller J, Xayavong M, Narayanan J, DeBarry JD, Srinivasamoorthy G, Villegas L, Escalante AA, DaSilva A, Peterson DS, Barnwell JW, Kissinger JC, Udhayakumar V, Lucchi NW.

PLoS One. 2013;8(1):e54986. doi: 10.1371/journal.pone.0054986. Epub 2013 Jan 22.

16.

EuPathDB: the eukaryotic pathogen database.

Aurrecoechea C, Barreto A, Brestelli J, Brunk BP, Cade S, Doherty R, Fischer S, Gajria B, Gao X, Gingle A, Grant G, Harb OS, Heiges M, Hu S, Iodice J, Kissinger JC, Kraemer ET, Li W, Pinney DF, Pitts B, Roos DS, Srinivasamoorthy G, Stoeckert CJ Jr, Wang H, Warrenfeltz S.

Nucleic Acids Res. 2013 Jan;41(Database issue):D684-91. doi: 10.1093/nar/gks1113. Epub 2012 Nov 21.

17.

SchistoDB: an updated genome resource for the three key schistosomes of humans.

Zerlotini A, Aguiar ER, Yu F, Xu H, Li Y, Young ND, Gasser RB, Protasio AV, Berriman M, Roos DS, Kissinger JC, Oliveira G.

Nucleic Acids Res. 2013 Jan;41(Database issue):D728-31. doi: 10.1093/nar/gks1087. Epub 2012 Nov 17.

18.

A 43-nucleotide U-rich element in 3'-untranslated region of large number of Trypanosoma cruzi transcripts is important for mRNA abundance in intracellular amastigotes.

Li ZH, De Gaudenzi JG, Alvarez VE, Mendiondo N, Wang H, Kissinger JC, Frasch AC, Docampo R.

J Biol Chem. 2012 Jun 1;287(23):19058-69. doi: 10.1074/jbc.M111.338699. Epub 2012 Apr 12.

19.

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity.

Wang Y, Tang H, Debarry JD, Tan X, Li J, Wang X, Lee TH, Jin H, Marler B, Guo H, Kissinger JC, Paterson AH.

Nucleic Acids Res. 2012 Apr;40(7):e49. doi: 10.1093/nar/gkr1293. Epub 2012 Jan 4.

20.

FungiDB: an integrated functional genomics database for fungi.

Stajich JE, Harris T, Brunk BP, Brestelli J, Fischer S, Harb OS, Kissinger JC, Li W, Nayak V, Pinney DF, Stoeckert CJ Jr, Roos DS.

Nucleic Acids Res. 2012 Jan;40(Database issue):D675-81. doi: 10.1093/nar/gkr918. Epub 2011 Nov 7.

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