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Results: 1 to 20 of 82

1.

The Cryptosporidium parvum ApiAP2 gene family: insights into the evolution of apicomplexan AP2 regulatory systems.

Oberstaller J, Pumpalova Y, Schieler A, Llinás M, Kissinger JC.

Nucleic Acids Res. 2014 Sep 1;42(13):8271-84. doi: 10.1093/nar/gku500. Epub 2014 Jun 23.

PMID:
24957599
[PubMed - in process]
Free PMC Article
2.

Metabolomics in the fight against malaria.

Salinas JL, Kissinger JC, Jones DP, Galinski MR.

Mem Inst Oswaldo Cruz. 2014 Apr 29;0:0. [Epub ahead of print]

PMID:
24956039
[PubMed - as supplied by publisher]
Free Article
3.

Standardized metadata for human pathogen/vector genomic sequences.

Dugan VG, Emrich SJ, Giraldo-Calderón GI, Harb OS, Newman RM, Pickett BE, Schriml LM, Stockwell TB, Stoeckert CJ Jr, Sullivan DE, Singh I, Ward DV, Yao A, Zheng J, Barrett T, Birren B, Brinkac L, Bruno VM, Caler E, Chapman S, Collins FH, Cuomo CA, Di Francesco V, Durkin S, Eppinger M, Feldgarden M, Fraser C, Fricke WF, Giovanni M, Henn MR, Hine E, Hotopp JD, Karsch-Mizrachi I, Kissinger JC, Lee EM, Mathur P, Mongodin EF, Murphy CI, Myers G, Neafsey DE, Nelson KE, Nierman WC, Puzak J, Rasko D, Roos DS, Sadzewicz L, Silva JC, Sobral B, Squires RB, Stevens RL, Tallon L, Tettelin H, Wentworth D, White O, Will R, Wortman J, Zhang Y, Scheuermann RH.

PLoS One. 2014 Jun 17;9(6):e99979. doi: 10.1371/journal.pone.0099979. eCollection 2014.

PMID:
24936976
[PubMed - in process]
Free PMC Article
4.

A survey of innovation through duplication in the reduced genomes of twelve parasites.

DeBarry JD, Kissinger JC.

PLoS One. 2014 Jun 11;9(6):e99213. doi: 10.1371/journal.pone.0099213. eCollection 2014.

PMID:
24919110
[PubMed - in process]
Free PMC Article
5.

Genome-wide upstream motif analysis of Cryptosporidium parvum genes clustered by expression profile.

Oberstaller J, Joseph SJ, Kissinger JC.

BMC Genomics. 2013 Jul 29;14:516. doi: 10.1186/1471-2164-14-516.

PMID:
23895416
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Malaria diagnostics and surveillance in the post-genomic era.

Lucchi NW, Oberstaller J, Kissinger JC, Udhayakumar V.

Public Health Genomics. 2013;16(1-2):37-43. doi: 10.1159/000345607. Epub 2013 Mar 18.

PMID:
23548716
[PubMed - indexed for MEDLINE]
7.

Real-time loop-mediated isothermal amplification (RealAmp) for the species-specific identification of Plasmodium vivax.

Patel JC, Oberstaller J, Xayavong M, Narayanan J, DeBarry JD, Srinivasamoorthy G, Villegas L, Escalante AA, DaSilva A, Peterson DS, Barnwell JW, Kissinger JC, Udhayakumar V, Lucchi NW.

PLoS One. 2013;8(1):e54986. doi: 10.1371/journal.pone.0054986. Epub 2013 Jan 22.

PMID:
23349994
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

EuPathDB: the eukaryotic pathogen database.

Aurrecoechea C, Barreto A, Brestelli J, Brunk BP, Cade S, Doherty R, Fischer S, Gajria B, Gao X, Gingle A, Grant G, Harb OS, Heiges M, Hu S, Iodice J, Kissinger JC, Kraemer ET, Li W, Pinney DF, Pitts B, Roos DS, Srinivasamoorthy G, Stoeckert CJ Jr, Wang H, Warrenfeltz S.

Nucleic Acids Res. 2013 Jan;41(Database issue):D684-91. doi: 10.1093/nar/gks1113. Epub 2012 Nov 21.

PMID:
23175615
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

SchistoDB: an updated genome resource for the three key schistosomes of humans.

Zerlotini A, Aguiar ER, Yu F, Xu H, Li Y, Young ND, Gasser RB, Protasio AV, Berriman M, Roos DS, Kissinger JC, Oliveira G.

Nucleic Acids Res. 2013 Jan;41(Database issue):D728-31. doi: 10.1093/nar/gks1087. Epub 2012 Nov 17.

PMID:
23161692
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

A 43-nucleotide U-rich element in 3'-untranslated region of large number of Trypanosoma cruzi transcripts is important for mRNA abundance in intracellular amastigotes.

Li ZH, De Gaudenzi JG, Alvarez VE, Mendiondo N, Wang H, Kissinger JC, Frasch AC, Docampo R.

J Biol Chem. 2012 Jun 1;287(23):19058-69. doi: 10.1074/jbc.M111.338699. Epub 2012 Apr 12.

PMID:
22500021
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity.

Wang Y, Tang H, Debarry JD, Tan X, Li J, Wang X, Lee TH, Jin H, Marler B, Guo H, Kissinger JC, Paterson AH.

Nucleic Acids Res. 2012 Apr;40(7):e49. doi: 10.1093/nar/gkr1293. Epub 2012 Jan 4.

PMID:
22217600
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

FungiDB: an integrated functional genomics database for fungi.

Stajich JE, Harris T, Brunk BP, Brestelli J, Fischer S, Harb OS, Kissinger JC, Li W, Nayak V, Pinney DF, Stoeckert CJ Jr, Roos DS.

Nucleic Acids Res. 2012 Jan;40(Database issue):D675-81. doi: 10.1093/nar/gkr918. Epub 2011 Nov 7.

PMID:
22064857
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Recombination in avian gamma-coronavirus infectious bronchitis virus.

Thor SW, Hilt DA, Kissinger JC, Paterson AH, Jackwood MW.

Viruses. 2011 Sep;3(9):1777-99. doi: 10.3390/v3091777. Epub 2011 Sep 23.

PMID:
21994806
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Changes in nonstructural protein 3 are associated with attenuation in avian coronavirus infectious bronchitis virus.

Phillips JE, Jackwood MW, McKinley ET, Thor SW, Hilt DA, Acevedol ND, Williams SM, Kissinger JC, Paterson AH, Robertson JS, Lemke C.

Virus Genes. 2012 Feb;44(1):63-74. doi: 10.1007/s11262-011-0668-7. Epub 2011 Sep 10.

PMID:
21909766
[PubMed - indexed for MEDLINE]
15.

Genome cartography: charting the apicomplexan genome.

Kissinger JC, DeBarry J.

Trends Parasitol. 2011 Aug;27(8):345-54. doi: 10.1016/j.pt.2011.03.006. Epub 2011 Jul 19. Review.

PMID:
21764378
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

The Strategies WDK: a graphical search interface and web development kit for functional genomics databases.

Fischer S, Aurrecoechea C, Brunk BP, Gao X, Harb OS, Kraemer ET, Pennington C, Treatman C, Kissinger JC, Roos DS, Stoeckert CJ.

Database (Oxford). 2011 Jun 23;2011:bar027. doi: 10.1093/database/bar027. Print 2011.

PMID:
21705364
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Attenuated live vaccine usage affects accurate measures of virus diversity and mutation rates in avian coronavirus infectious bronchitis virus.

McKinley ET, Jackwood MW, Hilt DA, Kissinger JC, Robertson JS, Lemke C, Paterson AH.

Virus Res. 2011 Jun;158(1-2):225-34. doi: 10.1016/j.virusres.2011.04.006. Epub 2011 Apr 22.

PMID:
21539870
[PubMed - indexed for MEDLINE]
18.

Applied genomics: data mining reveals species-specific malaria diagnostic targets more sensitive than 18S rRNA.

Demas A, Oberstaller J, DeBarry J, Lucchi NW, Srinivasamoorthy G, Sumari D, Kabanywanyi AM, Villegas L, Escalante AA, Kachur SP, Barnwell JW, Peterson DS, Udhayakumar V, Kissinger JC.

J Clin Microbiol. 2011 Jul;49(7):2411-8. doi: 10.1128/JCM.02603-10. Epub 2011 Apr 27.

PMID:
21525225
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Jumbled genomes: missing Apicomplexan synteny.

DeBarry JD, Kissinger JC.

Mol Biol Evol. 2011 Oct;28(10):2855-71. doi: 10.1093/molbev/msr103. Epub 2011 Apr 19.

PMID:
21504890
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

AmoebaDB and MicrosporidiaDB: functional genomic resources for Amoebozoa and Microsporidia species.

Aurrecoechea C, Barreto A, Brestelli J, Brunk BP, Caler EV, Fischer S, Gajria B, Gao X, Gingle A, Grant G, Harb OS, Heiges M, Iodice J, Kissinger JC, Kraemer ET, Li W, Nayak V, Pennington C, Pinney DF, Pitts B, Roos DS, Srinivasamoorthy G, Stoeckert CJ Jr, Treatman C, Wang H.

Nucleic Acids Res. 2011 Jan;39(Database issue):D612-9. doi: 10.1093/nar/gkq1006. Epub 2010 Oct 24.

PMID:
20974635
[PubMed - indexed for MEDLINE]
Free PMC Article

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