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Results: 1 to 20 of 33

1.

Coliphage HK022 Nun protein inhibits RNA polymerase translocation.

Vitiello CL, Kireeva ML, Lubkowska L, Kashlev M, Gottesman M.

Proc Natl Acad Sci U S A. 2014 Jun 10;111(23):E2368-75. doi: 10.1073/pnas.1319740111. Epub 2014 May 22.

PMID:
24853501
[PubMed - in process]
2.

RNA polymerase structure, function, regulation, dynamics, fidelity, and roles in gene expression.

Kireeva ML, Kashlev M, Burton ZF.

Chem Rev. 2013 Nov 13;113(11):8325-30. doi: 10.1021/cr400436m. No abstract available.

PMID:
24219496
[PubMed - indexed for MEDLINE]
3.

Co-transcriptional production of RNA-DNA hybrids for simultaneous release of multiple split functionalities.

Afonin KA, Desai R, Viard M, Kireeva ML, Bindewald E, Case CL, Maciag AE, Kasprzak WK, Kim T, Sappe A, Stepler M, Kewalramani VN, Kashlev M, Blumenthal R, Shapiro BA.

Nucleic Acids Res. 2014 Feb;42(3):2085-97. doi: 10.1093/nar/gkt1001. Epub 2013 Nov 4.

PMID:
24194608
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Complete dissection of transcription elongation reveals slow translocation of RNA polymerase II in a linear ratchet mechanism.

Dangkulwanich M, Ishibashi T, Liu S, Kireeva ML, Lubkowska L, Kashlev M, Bustamante CJ.

Elife (Cambridge). 2013 Sep 24;2:e00971. doi: 10.7554/eLife.00971.

PMID:
24066225
[PubMed]
Free PMC Article
5.

Intrinsic translocation barrier as an initial step in pausing by RNA polymerase II.

Imashimizu M, Kireeva ML, Lubkowska L, Gotte D, Parks AR, Strathern JN, Kashlev M.

J Mol Biol. 2013 Feb 22;425(4):697-712. doi: 10.1016/j.jmb.2012.12.002. Epub 2012 Dec 10.

PMID:
23238253
[PubMed - indexed for MEDLINE]
6.

The RNA polymerase bridge helix YFI motif in catalysis, fidelity and translocation.

Nedialkov YA, Opron K, Assaf F, Artsimovitch I, Kireeva ML, Kashlev M, Cukier RI, Nudler E, Burton ZF.

Biochim Biophys Acta. 2013 Feb;1829(2):187-98. doi: 10.1016/j.bbagrm.2012.11.005. Epub 2012 Nov 30.

PMID:
23202476
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Sensitivity of mitochondrial transcription and resistance of RNA polymerase II dependent nuclear transcription to antiviral ribonucleosides.

Arnold JJ, Sharma SD, Feng JY, Ray AS, Smidansky ED, Kireeva ML, Cho A, Perry J, Vela JE, Park Y, Xu Y, Tian Y, Babusis D, Barauskus O, Peterson BR, Gnatt A, Kashlev M, Zhong W, Cameron CE.

PLoS Pathog. 2012;8(11):e1003030. doi: 10.1371/journal.ppat.1003030. Epub 2012 Nov 15.

PMID:
23166498
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Molecular dynamics and mutational analysis of the catalytic and translocation cycle of RNA polymerase.

Kireeva ML, Opron K, Seibold SA, Domecq C, Cukier RI, Coulombe B, Kashlev M, Burton ZF.

BMC Biophys. 2012 Jun 7;5:11. doi: 10.1186/2046-1682-5-11.

PMID:
22676913
[PubMed]
Free PMC Article
9.

Mechanism of translesion transcription by RNA polymerase II and its role in cellular resistance to DNA damage.

Walmacq C, Cheung AC, Kireeva ML, Lubkowska L, Ye C, Gotte D, Strathern JN, Carell T, Cramer P, Kashlev M.

Mol Cell. 2012 Apr 13;46(1):18-29. doi: 10.1016/j.molcel.2012.02.006. Epub 2012 Mar 8.

PMID:
22405652
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Interaction of RNA polymerase II fork loop 2 with downstream non-template DNA regulates transcription elongation.

Kireeva ML, Domecq C, Coulombe B, Burton ZF, Kashlev M.

J Biol Chem. 2011 Sep 2;286(35):30898-910. doi: 10.1074/jbc.M111.260844. Epub 2011 Jul 5.

PMID:
21730074
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Synergistic action of RNA polymerases in overcoming the nucleosomal barrier.

Jin J, Bai L, Johnson DS, Fulbright RM, Kireeva ML, Kashlev M, Wang MD.

Nat Struct Mol Biol. 2010 Jun;17(6):745-52. doi: 10.1038/nsmb.1798. Epub 2010 May 9.

PMID:
20453861
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Rpb9 subunit controls transcription fidelity by delaying NTP sequestration in RNA polymerase II.

Walmacq C, Kireeva ML, Irvin J, Nedialkov Y, Lubkowska L, Malagon F, Strathern JN, Kashlev M.

J Biol Chem. 2009 Jul 17;284(29):19601-12. doi: 10.1074/jbc.M109.006908. Epub 2009 May 13.

PMID:
19439405
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Mechanism of sequence-specific pausing of bacterial RNA polymerase.

Kireeva ML, Kashlev M.

Proc Natl Acad Sci U S A. 2009 Jun 2;106(22):8900-5. doi: 10.1073/pnas.0900407106. Epub 2009 Apr 24.

PMID:
19416863
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Transient reversal of RNA polymerase II active site closing controls fidelity of transcription elongation.

Kireeva ML, Nedialkov YA, Cremona GH, Purtov YA, Lubkowska L, Malagon F, Burton ZF, Strathern JN, Kashlev M.

Mol Cell. 2008 Jun 6;30(5):557-66. doi: 10.1016/j.molcel.2008.04.017.

PMID:
18538654
[PubMed - indexed for MEDLINE]
Free Article
15.

Effects of Friedreich's ataxia (GAA)n*(TTC)n repeats on RNA synthesis and stability.

Krasilnikova MM, Kireeva ML, Petrovic V, Knijnikova N, Kashlev M, Mirkin SM.

Nucleic Acids Res. 2007;35(4):1075-84. Epub 2007 Jan 30.

PMID:
17264130
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Mutations in the Saccharomyces cerevisiae RPB1 gene conferring hypersensitivity to 6-azauracil.

Malagon F, Kireeva ML, Shafer BK, Lubkowska L, Kashlev M, Strathern JN.

Genetics. 2006 Apr;172(4):2201-9. Epub 2006 Mar 1.

PMID:
16510790
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Nature of the nucleosomal barrier to RNA polymerase II.

Kireeva ML, Hancock B, Cremona GH, Walter W, Studitsky VM, Kashlev M.

Mol Cell. 2005 Apr 1;18(1):97-108.

PMID:
15808512
[PubMed - indexed for MEDLINE]
Free Article
18.

Assay of the fate of the nucleosome during transcription by RNA polymerase II.

Walter W, Kireeva ML, Tchernajenko V, Kashlev M, Studitsky VM.

Methods Enzymol. 2003;371:564-77. No abstract available.

PMID:
14712729
[PubMed - indexed for MEDLINE]
19.

Engineering of elongation complexes of bacterial and yeast RNA polymerases.

Komissarova N, Kireeva ML, Becker J, Sidorenkov I, Kashlev M.

Methods Enzymol. 2003;371:233-51. No abstract available.

PMID:
14712704
[PubMed - indexed for MEDLINE]
20.

Assays and affinity purification of biotinylated and nonbiotinylated forms of double-tagged core RNA polymerase II from Saccharomyces cerevisiae.

Kireeva ML, Lubkowska L, Komissarova N, Kashlev M.

Methods Enzymol. 2003;370:138-55. No abstract available.

PMID:
14712640
[PubMed - indexed for MEDLINE]

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