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Items: 1 to 20 of 38

1.

Sorting out relationships among the grouse and ptarmigan using intron, mitochondrial, and ultra-conserved element sequences.

Persons NW, Hosner PA, Meiklejohn KA, Braun EL, Kimball RT.

Mol Phylogenet Evol. 2016 May;98:123-32. doi: 10.1016/j.ympev.2016.02.003. Epub 2016 Feb 12.

PMID:
26879712
2.

Analysis of a Rapid Evolutionary Radiation Using Ultraconserved Elements: Evidence for a Bias in Some Multispecies Coalescent Methods.

Meiklejohn KA, Faircloth BC, Glenn TC, Kimball RT, Braun EL.

Syst Biol. 2016 Jul;65(4):612-27. doi: 10.1093/sysbio/syw014. Epub 2016 Feb 10.

PMID:
26865273
3.

Avoiding Missing Data Biases in Phylogenomic Inference: An Empirical Study in the Landfowl (Aves: Galliformes).

Hosner PA, Faircloth BC, Glenn TC, Braun EL, Kimball RT.

Mol Biol Evol. 2016 Apr;33(4):1110-25. doi: 10.1093/molbev/msv347. Epub 2015 Dec 29.

PMID:
26715628
4.

Building the avian tree of life using a large-scale, sparse supermatrix.

Burleigh JG, Kimball RT, Braun EL.

Mol Phylogenet Evol. 2015 Mar;84:53-63. doi: 10.1016/j.ympev.2014.12.003. Epub 2014 Dec 27.

PMID:
25550149
5.

The evolution of peafowl and other taxa with ocelli (eyespots): a phylogenomic approach.

Sun K, Meiklejohn KA, Faircloth BC, Glenn TC, Braun EL, Kimball RT.

Proc Biol Sci. 2014 Sep 7;281(1790). pii: 20140823. doi: 10.1098/rspb.2014.0823.

6.

Incongruence among different mitochondrial regions: a case study using complete mitogenomes.

Meiklejohn KA, Danielson MJ, Faircloth BC, Glenn TC, Braun EL, Kimball RT.

Mol Phylogenet Evol. 2014 Sep;78:314-23. doi: 10.1016/j.ympev.2014.06.003. Epub 2014 Jun 12.

PMID:
24929245
7.

Does more sequence data improve estimates of galliform phylogeny? Analyses of a rapid radiation using a complete data matrix.

Kimball RT, Braun EL.

PeerJ. 2014 Apr 22;2:e361. doi: 10.7717/peerj.361. eCollection 2014.

8.

Geographic variation in the acoustic traits of greater horseshoe bats: testing the importance of drift and ecological selection in evolutionary processes.

Sun K, Luo L, Kimball RT, Wei X, Jin L, Jiang T, Li G, Feng J.

PLoS One. 2013 Aug 8;8(8):e70368. doi: 10.1371/journal.pone.0070368. eCollection 2013.

9.

Identifying localized biases in large datasets: a case study using the avian tree of life.

Kimball RT, Wang N, Heimer-McGinn V, Ferguson C, Braun EL.

Mol Phylogenet Evol. 2013 Dec;69(3):1021-32. doi: 10.1016/j.ympev.2013.05.029. Epub 2013 Jun 20.

PMID:
23791948
10.

Assessing phylogenetic relationships among galliformes: a multigene phylogeny with expanded taxon sampling in Phasianidae.

Wang N, Kimball RT, Braun EL, Liang B, Zhang Z.

PLoS One. 2013 May 31;8(5):e64312. doi: 10.1371/journal.pone.0064312. Print 2013.

11.

Parsimony and model-based analyses of indels in avian nuclear genes reveal congruent and incongruent phylogenetic signals.

Yuri T, Kimball RT, Harshman J, Bowie RC, Braun MJ, Chojnowski JL, Han KL, Hackett SJ, Huddleston CJ, Moore WS, Reddy S, Sheldon FH, Steadman DW, Witt CC, Braun EL.

Biology (Basel). 2013 Mar 13;2(1):419-44. doi: 10.3390/biology2010419.

12.

Ratite nonmonophyly: independent evidence from 40 novel Loci.

Smith JV, Braun EL, Kimball RT.

Syst Biol. 2013 Jan 1;62(1):35-49. doi: 10.1093/sysbio/sys067. Epub 2012 Jul 24.

PMID:
22831877
13.

Testing hypotheses about the sister group of the passeriformes using an independent 30-locus data set.

Wang N, Braun EL, Kimball RT.

Mol Biol Evol. 2012 Feb;29(2):737-50. doi: 10.1093/molbev/msr230. Epub 2011 Sep 22.

14.

A macroevolutionary perspective on multiple sexual traits in the phasianidae (galliformes).

Kimball RT, Mary CM, Braun EL.

Int J Evol Biol. 2011;2011:423938. doi: 10.4061/2011/423938. Epub 2011 May 2.

15.

Homoplastic microinversions and the avian tree of life.

Braun EL, Kimball RT, Han KL, Iuhasz-Velez NR, Bonilla AJ, Chojnowski JL, Smith JV, Bowie RC, Braun MJ, Hackett SJ, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Reddy S, Sheldon FH, Witt CC, Yuri T.

BMC Evol Biol. 2011 May 25;11:141. doi: 10.1186/1471-2148-11-141.

16.

Are transposable element insertions homoplasy free?: an examination using the avian tree of life.

Han KL, Braun EL, Kimball RT, Reddy S, Bowie RC, Braun MJ, Chojnowski JL, Hackett SJ, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Sheldon FH, Steadman DW, Witt CC, Yuri T.

Syst Biol. 2011 May;60(3):375-86. doi: 10.1093/sysbio/syq100. Epub 2011 Feb 8. No abstract available.

PMID:
21303823
17.

Dispersers shape fruit diversity in Ficus (Moraceae).

Lomáscolo SB, Levey DJ, Kimball RT, Bolker BM, Alborn HT.

Proc Natl Acad Sci U S A. 2010 Aug 17;107(33):14668-72. doi: 10.1073/pnas.1008773107. Epub 2010 Aug 2.

18.

Comparative molecular evolution and phylogenetic utility of 3'-UTRs and introns in Galliformes.

Bonilla AJ, Braun EL, Kimball RT.

Mol Phylogenet Evol. 2010 Aug;56(2):536-42. doi: 10.1016/j.ympev.2010.04.006. Epub 2010 Apr 14.

PMID:
20398778
19.

Molecular and morphological divergence in a pair of bird species and their ectoparasites.

Whiteman NK, Dosanjh VS, Palma RL, Hull JM, Kimball RT, Sánchez P, Sarasola JH, Parker PG.

J Parasitol. 2009 Dec;95(6):1372-82. doi: 10.1645/GE-2009.1.

PMID:
19655998
20.

A well-tested set of primers to amplify regions spread across the avian genome.

Kimball RT, Braun EL, Barker FK, Bowie RC, Braun MJ, Chojnowski JL, Hackett SJ, Han KL, Harshman J, Heimer-Torres V, Holznagel W, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Reddy S, Sheldon FH, Smith JV, Witt CC, Yuri T.

Mol Phylogenet Evol. 2009 Mar;50(3):654-60. doi: 10.1016/j.ympev.2008.11.018. Epub 2008 Dec 6. No abstract available.

PMID:
19084073
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