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Results: 1 to 20 of 28

1.

Augmenting microarray data with literature-based knowledge to enhance gene regulatory network inference.

Chen G, Cairelli MJ, Kilicoglu H, Shin D, Rindflesch TC.

PLoS Comput Biol. 2014 Jun 12;10(6):e1003666. doi: 10.1371/journal.pcbi.1003666. eCollection 2014 Jun.

PMID:
24921649
[PubMed - in process]
Free PMC Article
2.

Automatically extracting clinically useful sentences from UpToDate to support clinicians' information needs.

Mishra R, Del Fiol G, Kilicoglu H, Jonnalagadda S, Fiszman M.

AMIA Annu Symp Proc. 2013 Nov 16;2013:987-92. eCollection 2013.

PMID:
24551389
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Using semantic predications to uncover drug-drug interactions in clinical data.

Zhang R, Cairelli MJ, Fiszman M, Rosemblat G, Kilicoglu H, Rindflesch TC, Pakhomov SV, Melton GB.

J Biomed Inform. 2014 Jun;49:134-47. doi: 10.1016/j.jbi.2014.01.004. Epub 2014 Jan 19.

PMID:
24448204
[PubMed - in process]
4.

A methodology for extending domain coverage in SemRep.

Rosemblat G, Shin D, Kilicoglu H, Sneiderman C, Rindflesch TC.

J Biomed Inform. 2013 Dec;46(6):1099-107. doi: 10.1016/j.jbi.2013.08.005. Epub 2013 Aug 21.

PMID:
23973273
[PubMed - indexed for MEDLINE]
5.

SemMedDB: a PubMed-scale repository of biomedical semantic predications.

Kilicoglu H, Shin D, Fiszman M, Rosemblat G, Rindflesch TC.

Bioinformatics. 2012 Dec 1;28(23):3158-60. doi: 10.1093/bioinformatics/bts591. Epub 2012 Oct 8.

PMID:
23044550
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Biological event composition.

Kilicoglu H, Bergler S.

BMC Bioinformatics. 2012 Jun 26;13 Suppl 11:S7. doi: 10.1186/1471-2105-13-S11-S7.

PMID:
22759461
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Constructing a semantic predication gold standard from the biomedical literature.

Kilicoglu H, Rosemblat G, Fiszman M, Rindflesch TC.

BMC Bioinformatics. 2011 Dec 20;12:486. doi: 10.1186/1471-2105-12-486.

PMID:
22185221
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

U-Compare bio-event meta-service: compatible BioNLP event extraction services.

Kano Y, Björne J, Ginter F, Salakoski T, Buyko E, Hahn U, Cohen KB, Verspoor K, Roeder C, Hunter LE, Kilicoglu H, Bergler S, Van Landeghem S, Van Parys T, Van de Peer Y, Miwa M, Ananiadou S, Neves M, Pascual-Montano A, Özgür A, Radev DR, Riedel S, Sætre R, Chun HW, Kim JD, Pyysalo S, Ohta T, Tsujii J.

BMC Bioinformatics. 2011 Dec 18;12:481. doi: 10.1186/1471-2105-12-481.

PMID:
22177292
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

The effect of enamel bleaching on the shear bond strengths of metal and ceramic brackets.

Oztaş E, Bağdelen G, Kiliçoğlu H, Ulukapi H, Aydin I.

Eur J Orthod. 2012 Apr;34(2):232-7. doi: 10.1093/ejo/cjq193. Epub 2011 Jan 24.

PMID:
21262931
[PubMed - indexed for MEDLINE]
Free Article
10.

The effects of two methods of Class III malocclusion treatment on temporomandibular disorders.

Kurt H, Alioğlu C, Karayazgan B, Tuncer N, Kılıçoğlu H.

Eur J Orthod. 2011 Dec;33(6):636-41. doi: 10.1093/ejo/cjq114. Epub 2010 Dec 27.

PMID:
21187525
[PubMed - indexed for MEDLINE]
Free Article
11.

Adapting Semantic Natural Language Processing Technology to Address Information Overload in Influenza Epidemic Management.

Keselman A, Rosemblat G, Kilicoglu H, Fiszman M, Jin H, Shin D, Rindflesch TC.

J Am Soc Inf Sci Technol. 2010 Dec 1;61(12). doi: 10.1002/asi.21414.

PMID:
24311971
[PubMed]
Free PMC Article
12.

Combining relevance assignment with quality of the evidence to support guideline development.

Fiszman M, Bray BE, Shin D, Kilicoglu H, Bennett GC, Bodenreider O, Rindflesch TC.

Stud Health Technol Inform. 2010;160(Pt 1):709-13.

PMID:
20841778
[PubMed - indexed for MEDLINE]
13.

An atypical form of necrotizing periodontitis.

Guvenc D, Gokbuget AY, Cintan S, Kara G, Cifcibasi EY, Unuvar E, Ciftci S, Keskin F, Kulekci G, Yaltirik M, Kilicoglu H.

J Periodontol. 2009 Sep;80(9):1548-53. doi: 10.1902/jop.2009.090146.

PMID:
19722808
[PubMed - indexed for MEDLINE]
14.

Recognizing speculative language in biomedical research articles: a linguistically motivated perspective.

Kilicoglu H, Bergler S.

BMC Bioinformatics. 2008 Nov 19;9 Suppl 11:S10. doi: 10.1186/1471-2105-9-S11-S10.

PMID:
19025686
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Automatic summarization of MEDLINE citations for evidence-based medical treatment: a topic-oriented evaluation.

Fiszman M, Demner-Fushman D, Kilicoglu H, Rindflesch TC.

J Biomed Inform. 2009 Oct;42(5):801-13. doi: 10.1016/j.jbi.2008.10.002. Epub 2008 Nov 5.

PMID:
19022398
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Toward automatic recognition of high quality clinical evidence.

Kilicoglu H, Demner-Fushman D, Rindflesch TC, Wilczynski NL, Haynes RB.

AMIA Annu Symp Proc. 2008 Nov 6:368.

PMID:
18998881
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Towards automatic recognition of scientifically rigorous clinical research evidence.

Kilicoglu H, Demner-Fushman D, Rindflesch TC, Wilczynski NL, Haynes RB.

J Am Med Inform Assoc. 2009 Jan-Feb;16(1):25-31. doi: 10.1197/jamia.M2996. Epub 2008 Oct 24.

PMID:
18952929
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Using the literature-based discovery paradigm to investigate drug mechanisms.

Ahlers CB, Hristovski D, Kilicoglu H, Rindflesch TC.

AMIA Annu Symp Proc. 2007 Oct 11:6-10.

PMID:
18693787
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Summarizing drug information in Medline citations.

Fiszman M, Rindflesch TC, Kilicoglu H.

AMIA Annu Symp Proc. 2006:254-8.

PMID:
17238342
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Medical facts to support inferencing in natural language processing.

Rindflesch TC, Pakhomov SV, Fiszman M, Kilicoglu H, Sanchez VR.

AMIA Annu Symp Proc. 2005:634-8.

PMID:
16779117
[PubMed - indexed for MEDLINE]
Free PMC Article

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