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How Is Fe-S Cluster Formation Regulated?

Mettert EL, Kiley PJ.

Annu Rev Microbiol. 2015 Oct 15;69:505-26. doi: 10.1146/annurev-micro-091014-104457.


Defining bacterial regulons using ChIP-seq.

Myers KS, Park DM, Beauchene NA, Kiley PJ.

Methods. 2015 Sep 15;86:80-8. doi: 10.1016/j.ymeth.2015.05.022. Epub 2015 May 29. Review.


Design principles of a conditional futile cycle exploited for regulation.

Tolla DA, Kiley PJ, Lomnitz JG, Savageau MA.

Mol Biosyst. 2015 Jul;11(7):1841-9. doi: 10.1039/c5mb00055f.


Fe-S proteins that regulate gene expression.

Mettert EL, Kiley PJ.

Biochim Biophys Acta. 2015 Jun;1853(6):1284-93. doi: 10.1016/j.bbamcr.2014.11.018. Epub 2014 Nov 20. Review.


Coordinate regulation of the Suf and Isc Fe-S cluster biogenesis pathways by IscR is essential for viability of Escherichia coli.

Mettert EL, Kiley PJ.

J Bacteriol. 2014 Dec;196(24):4315-23. doi: 10.1128/JB.01975-14. Epub 2014 Sep 29.


Aromatic inhibitors derived from ammonia-pretreated lignocellulose hinder bacterial ethanologenesis by activating regulatory circuits controlling inhibitor efflux and detoxification.

Keating DH, Zhang Y, Ong IM, McIlwain S, Morales EH, Grass JA, Tremaine M, Bothfeld W, Higbee A, Ulbrich A, Balloon AJ, Westphall MS, Aldrich J, Lipton MS, Kim J, Moskvin OV, Bukhman YV, Coon JJ, Kiley PJ, Bates DM, Landick R.

Front Microbiol. 2014 Aug 13;5:402. doi: 10.3389/fmicb.2014.00402. eCollection 2014.


The influence of repressor DNA binding site architecture on transcriptional control.

Park DM, Kiley PJ.

MBio. 2014 Aug 26;5(5):e01684-14. doi: 10.1128/mBio.01684-14.


IscR is essential for yersinia pseudotuberculosis type III secretion and virulence.

Miller HK, Kwuan L, Schwiesow L, Bernick DL, Mettert E, Ramirez HA, Ragle JM, Chan PP, Kiley PJ, Lowe TM, Auerbuch V.

PLoS Pathog. 2014 Jun 12;10(6):e1004194. doi: 10.1371/journal.ppat.1004194. eCollection 2014 Jun.


Correcting direct effects of ethanol on translation and transcription machinery confers ethanol tolerance in bacteria.

Haft RJ, Keating DH, Schwaegler T, Schwalbach MS, Vinokur J, Tremaine M, Peters JM, Kotlajich MV, Pohlmann EL, Ong IM, Grass JA, Kiley PJ, Landick R.

Proc Natl Acad Sci U S A. 2014 Jun 24;111(25):E2576-85. doi: 10.1073/pnas.1401853111. Epub 2014 Jun 9.


The bacterial response regulator ArcA uses a diverse binding site architecture to regulate carbon oxidation globally.

Park DM, Akhtar MS, Ansari AZ, Landick R, Kiley PJ.

PLoS Genet. 2013;9(10):e1003839. doi: 10.1371/journal.pgen.1003839. Epub 2013 Oct 17.


Transcriptome changes associated with anaerobic growth in Yersinia intermedia (ATCC29909).

Babujee L, Balakrishnan V, Kiley PJ, Glasner JD, Perna NT.

PLoS One. 2013 Oct 7;8(10):e76567. doi: 10.1371/journal.pone.0076567. eCollection 2013.


Genome-scale analysis of escherichia coli FNR reveals complex features of transcription factor binding.

Myers KS, Yan H, Ong IM, Chung D, Liang K, Tran F, Keleş S, Landick R, Kiley PJ.

PLoS Genet. 2013 Jun;9(6):e1003565. doi: 10.1371/journal.pgen.1003565. Epub 2013 Jun 20.


Studies of IscR reveal a unique mechanism for metal-dependent regulation of DNA binding specificity.

Rajagopalan S, Teter SJ, Zwart PH, Brennan RG, Phillips KJ, Kiley PJ.

Nat Struct Mol Biol. 2013 Jun;20(6):740-7. doi: 10.1038/nsmb.2568. Epub 2013 May 5.


Regulation of iron-sulphur cluster homeostasis through transcriptional control of the Isc pathway by [2Fe-2S]-IscR in Escherichia coli.

Giel JL, Nesbit AD, Mettert EL, Fleischhacker AS, Wanta BT, Kiley PJ.

Mol Microbiol. 2013 Feb;87(3):478-92. doi: 10.1111/mmi.12052. Epub 2012 Oct 17.


ArcA and AppY antagonize IscR repression of hydrogenase-1 expression under anaerobic conditions, revealing a novel mode of O2 regulation of gene expression in Escherichia coli.

Nesbit AD, Fleischhacker AS, Teter SJ, Kiley PJ.

J Bacteriol. 2012 Dec;194(24):6892-9. doi: 10.1128/JB.01757-12. Epub 2012 Oct 12.


Characterization of the [2Fe-2S] cluster of Escherichia coli transcription factor IscR.

Fleischhacker AS, Stubna A, Hsueh KL, Guo Y, Teter SJ, Rose JC, Brunold TC, Markley JL, Münck E, Kiley PJ.

Biochemistry. 2012 Jun 5;51(22):4453-62. Epub 2012 May 24.


Evolution of the metabolic and regulatory networks associated with oxygen availability in two phytopathogenic enterobacteria.

Babujee L, Apodaca J, Balakrishnan V, Liss P, Kiley PJ, Charkowski AO, Glasner JD, Perna NT.

BMC Genomics. 2012 Mar 22;13:110. doi: 10.1186/1471-2164-13-110.


Complex physiology and compound stress responses during fermentation of alkali-pretreated corn stover hydrolysate by an Escherichia coli ethanologen.

Schwalbach MS, Keating DH, Tremaine M, Marner WD, Zhang Y, Bothfeld W, Higbee A, Grass JA, Cotten C, Reed JL, da Costa Sousa L, Jin M, Balan V, Ellinger J, Dale B, Kiley PJ, Landick R.

Appl Environ Microbiol. 2012 May;78(9):3442-57. doi: 10.1128/AEM.07329-11. Epub 2012 Mar 2.


A shared mechanism of SoxR activation by redox-cycling compounds.

Dietrich LE, Kiley PJ.

Mol Microbiol. 2011 Mar;79(5):1119-22. doi: 10.1111/j.1365-2958.2011.07552.x. Epub 2011 Jan 31.


Iron-containing transcription factors and their roles as sensors.

Fleischhacker AS, Kiley PJ.

Curr Opin Chem Biol. 2011 Apr;15(2):335-41. doi: 10.1016/j.cbpa.2011.01.006. Epub 2011 Feb 1. Review.

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