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Draft Genome Sequence of the Rumen Methanogen Methanobrevibacter olleyae YLM1.

Kelly WJ, Li D, Lambie SC, Cox F, Attwood GT, Altermann E, Leahy SC.

Genome Announc. 2016 Apr 7;4(2). pii: e00232-16. doi: 10.1128/genomeA.00232-16.


Complete Genome Sequence of Methanogenic Archaeon ISO4-G1, a Member of the Methanomassiliicoccales, Isolated from a Sheep Rumen.

Kelly WJ, Li D, Lambie SC, Jeyanathan J, Cox F, Li Y, Attwood GT, Altermann E, Leahy SC.

Genome Announc. 2016 Apr 7;4(2). pii: e00221-16. doi: 10.1128/genomeA.00221-16.


The complete genome sequence of Eubacterium limosum SA11, a metabolically versatile rumen acetogen.

Kelly WJ, Henderson G, Pacheco DM, Li D, Reilly K, Naylor GE, Janssen PH, Attwood GT, Altermann E, Leahy SC.

Stand Genomic Sci. 2016 Mar 15;11:26. doi: 10.1186/s40793-016-0147-9. eCollection 2016.


The complete genome sequence of the rumen methanogen Methanosarcina barkeri CM1.

Lambie SC, Kelly WJ, Leahy SC, Li D, Reilly K, McAllister TA, Valle ER, Attwood GT, Altermann E.

Stand Genomic Sci. 2015 Aug 19;10:57. doi: 10.1186/s40793-015-0038-5. eCollection 2015.


RUMINANT NUTRITION SYMPOSIUM: Use of genomics and transcriptomics to identify strategies to lower ruminal methanogenesis.

McAllister TA, Meale SJ, Valle E, Guan LL, Zhou M, Kelly WJ, Henderson G, Attwood GT, Janssen PH.

J Anim Sci. 2015 Apr;93(4):1431-49. doi: 10.2527/jas.2014-8329.


Utilization of grasses for potential biofuel production and phytoremediation of heavy metal contaminated soils.

Balsamo RA, Kelly WJ, Satrio JA, Ruiz-Felix MN, Fetterman M, Wynn R, Hagel K.

Int J Phytoremediation. 2015;17(1-6):448-55. doi: 10.1080/15226514.2014.922918.


Determining the culturability of the rumen bacterial microbiome.

Creevey CJ, Kelly WJ, Henderson G, Leahy SC.

Microb Biotechnol. 2014 Sep;7(5):467-79. doi: 10.1111/1751-7915.12141. Epub 2014 Jul 1.


Methane yield phenotypes linked to differential gene expression in the sheep rumen microbiome.

Shi W, Moon CD, Leahy SC, Kang D, Froula J, Kittelmann S, Fan C, Deutsch S, Gagic D, Seedorf H, Kelly WJ, Atua R, Sang C, Soni P, Li D, Pinares-PatiƱo CS, McEwan JC, Janssen PH, Chen F, Visel A, Wang Z, Attwood GT, Rubin EM.

Genome Res. 2014 Sep;24(9):1517-25. doi: 10.1101/gr.168245.113. Epub 2014 Jun 6.


Draft Genome Sequence of Lactococcus lactis subsp. cremoris HPT, the First Defined-Strain Dairy Starter Culture Bacterium.

Lambie SC, Altermann E, Leahy SC, Kelly WJ.

Genome Announc. 2014 Mar 6;2(2). pii: e00107-14. doi: 10.1128/genomeA.00107-14.


The complete genome sequence of the rumen methanogen Methanobacterium formicicum BRM9.

Kelly WJ, Leahy SC, Li D, Perry R, Lambie SC, Attwood GT, Altermann E.

Stand Genomic Sci. 2014 Dec 8;9:15. doi: 10.1186/1944-3277-9-15. eCollection 2014.


Interaction between the genomes of Lactococcus lactis and phages of the P335 species.

Kelly WJ, Altermann E, Lambie SC, Leahy SC.

Front Microbiol. 2013 Aug 30;4:257. doi: 10.3389/fmicb.2013.00257. eCollection 2013.


The Complete Genome Sequence of Methanobrevibacter sp. AbM4.

Leahy SC, Kelly WJ, Li D, Li Y, Altermann E, Lambie SC, Cox F, Attwood GT.

Stand Genomic Sci. 2013 May 25;8(2):215-27. doi: 10.4056/sigs.3977691. eCollection 2013.


Genome sequencing of rumen bacteria and archaea and its application to methane mitigation strategies.

Leahy SC, Kelly WJ, Ronimus RS, Wedlock N, Altermann E, Attwood GT.

Animal. 2013 Jun;7 Suppl 2:235-43. doi: 10.1017/S1751731113000700. Review.


Lactic acid bacteria convert glucosinolates to nitriles efficiently yet differently from enterobacteriaceae.

Mullaney JA, Kelly WJ, McGhie TK, Ansell J, Heyes JA.

J Agric Food Chem. 2013 Mar 27;61(12):3039-46. doi: 10.1021/jf305442j. Epub 2013 Mar 15.


Structure and function of an acetyl xylan esterase (Est2A) from the rumen bacterium Butyrivibrio proteoclasticus.

Till M, Goldstone DC, Attwood GT, Moon CD, Kelly WJ, Arcus VL.

Proteins. 2013 May;81(5):911-7. doi: 10.1002/prot.24254. Epub 2013 Feb 25.


Rumen microbial (meta)genomics and its application to ruminant production.

Morgavi DP, Kelly WJ, Janssen PH, Attwood GT.

Animal. 2013 Mar;7 Suppl 1:184-201. doi: 10.1017/S1751731112000419. Epub 2012 Mar 1.


Carbohydrate transporting membrane proteins of the rumen bacterium, Butyrivibrio proteoclasticus.

Bond JJ, Dunne JC, Kwan FY, Li D, Zhang K, Leahy SC, Kelly WJ, Attwood GT, Jordan TW.

J Proteomics. 2012 Jun 18;75(11):3138-44. doi: 10.1016/j.jprot.2011.12.013. Epub 2011 Dec 20.


Extracellular polysaccharide-degrading proteome of Butyrivibrio proteoclasticus.

Dunne JC, Li D, Kelly WJ, Leahy SC, Bond JJ, Attwood GT, Jordan TW.

J Proteome Res. 2012 Jan 1;11(1):131-42. doi: 10.1021/pr200864j. Epub 2011 Nov 29.


The large episomes of Butyrivibrio proteoclasticus B316T have arisen through intragenomic gene shuttling from the chromosome to smaller Butyrivibrio-specific plasmids.

Yeoman CJ, Kelly WJ, Rakonjac J, Leahy SC, Altermann E, Attwood GT.

Plasmid. 2011 Jul;66(2):67-78. doi: 10.1016/j.plasmid.2011.05.002. Epub 2011 Jun 12.


Transposition of Tn916 in the four replicons of the Butyrivibrio proteoclasticus B316(T) genome.

Cookson AL, Noel S, Hussein H, Perry R, Sang C, Moon CD, Leahy SC, Altermann E, Kelly WJ, Attwood GT.

FEMS Microbiol Lett. 2011 Mar;316(2):144-51. doi: 10.1111/j.1574-6968.2010.02204.x. Epub 2011 Jan 18.

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