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Items: 1 to 20 of 379

1.

Whole Genome Analysis of Injectional Anthrax Identifies Two Disease Clusters Spanning More Than 13 Years.

Keim P, Grunow R, Vipond R, Grass G, Hoffmaster A, Birdsell DN, Klee SR, Pullan S, Antwerpen M, Bayer BN, Latham J, Wiggins K, Hepp C, Pearson T, Brooks T, Sahl J, Wagner DM.

EBioMedicine. 2015 Oct 6;2(11):1613-8. doi: 10.1016/j.ebiom.2015.10.004. eCollection 2015 Nov.

PMID:
26870786
2.

Eighteenth century Yersinia pestis genomes reveal the long-term persistence of an historical plague focus.

Bos KI, Herbig A, Sahl J, Waglechner N, Fourment M, Forrest SA, Klunk J, Schuenemann VJ, Poinar D, Kuch M, Golding GB, Dutour O, Keim P, Wagner DM, Holmes EC, Krause J, Poinar HN.

Elife. 2016 Jan 21;5. pii: e12994. doi: 10.7554/eLife.12994. [Epub ahead of print]

3.

Grain-boundary-induced melting in quenched polycrystalline monolayers.

Deutschländer S, Boitard C, Maret G, Keim P.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Dec;92(6-1):060302. Epub 2015 Dec 9.

PMID:
26764613
4.

Unprecedented Melioidosis Cases in Northern Australia Caused by an Asian Burkholderia pseudomallei Strain Identified by Using Large-Scale Comparative Genomics.

Price EP, Sarovich DS, Smith EJ, MacHunter B, Harrington G, Theobald V, Hall CM, Hornstra HM, McRobb E, Podin Y, Mayo M, Sahl JW, Wagner DM, Keim P, Kaestli M, Currie BJ.

Appl Environ Microbiol. 2015 Nov 25;82(3):954-63. doi: 10.1128/AEM.03013-15.

PMID:
26607593
5.

Diverse Burkholderia Species Isolated from Soils in the Southern United States with No Evidence of B. pseudomallei.

Hall CM, Busch JD, Shippy K, Allender CJ, Kaestli M, Mayo M, Sahl JW, Schupp JM, Colman RE, Keim P, Currie BJ, Wagner DM.

PLoS One. 2015 Nov 23;10(11):e0143254. doi: 10.1371/journal.pone.0143254. eCollection 2015.

6.

Investigation of Yersinia pestis Laboratory Adaptation through a Combined Genomics and Proteomics Approach.

Leiser OP, Merkley ED, Clowers BH, Deatherage Kaiser BL, Lin A, Hutchison JR, Melville AM, Wagner DM, Keim PS, Foster JT, Kreuzer HW.

PLoS One. 2015 Nov 24;10(11):e0142997. doi: 10.1371/journal.pone.0142997. eCollection 2015.

7.

High Prevalence of Intermediate Leptospira spp. DNA in Febrile Humans from Urban and Rural Ecuador.

Chiriboga J, Barragan V, Arroyo G, Sosa A, Birdsell DN, España K, Mora A, Espín E, Mejía ME, Morales M, Pinargote C, Gonzalez M, Hartskeerl R, Keim P, Bretas G, Eisenberg JN, Trueba G.

Emerg Infect Dis. 2015 Dec;21(12):2141-7. doi: 10.3201/eid2112.140659.

8.

Water as Source of Francisella tularensis Infection in Humans, Turkey.

Kilic S, Birdsell DN, Karagöz A, Çelebi B, Bakkaloglu Z, Arikan M, Sahl JW, Mitchell C, Rivera A, Maltinsky S, Keim P, Üstek D, Durmaz R, Wagner DM.

Emerg Infect Dis. 2015 Dec;21(12):2213-6. doi: 10.3201/eid2112.150634.

9.

Viability of Yersinia pestis subcultures in agar stabs.

Leal NC, Sobreira M, Araújo AF, Magalhães JL, Vogler AJ, Bollig MC, Nottingham R, Keim P, Wagner DM, Almeida AM.

Lett Appl Microbiol. 2016 Jan;62(1):91-5. doi: 10.1111/lam.12519.

PMID:
26524218
10.

A review of methods for subtyping Yersinia pestis: From phenotypes to whole genome sequencing.

Vogler AJ, Keim P, Wagner DM.

Infect Genet Evol. 2016 Jan;37:21-36. doi: 10.1016/j.meegid.2015.10.024. Epub 2015 Oct 27. Review.

11.

Pangenome Analysis of Burkholderia pseudomallei: Genome Evolution Preserves Gene Order despite High Recombination Rates.

Spring-Pearson SM, Stone JK, Doyle A, Allender CJ, Okinaka RT, Mayo M, Broomall SM, Hill JM, Karavis MA, Hubbard KS, Insalaco JM, McNew LA, Rosenzweig CN, Gibbons HS, Currie BJ, Wagner DM, Keim P, Tuanyok A.

PLoS One. 2015 Oct 20;10(10):e0140274. doi: 10.1371/journal.pone.0140274. eCollection 2015.

12.

Estimated herd prevalence and sequence types of Coxiella burnetii in bulk tank milk samples from commercial dairies in Indiana.

Bauer AE, Olivas S, Cooper M, Hornstra H, Keim P, Pearson T, Johnson AJ.

BMC Vet Res. 2015 Aug 7;11:186. doi: 10.1186/s12917-015-0517-3.

13.

Best practices for evaluating single nucleotide variant calling methods for microbial genomics.

Olson ND, Lund SP, Colman RE, Foster JT, Sahl JW, Schupp JM, Keim P, Morrow JB, Salit ML, Zook JM.

Front Genet. 2015 Jul 7;6:235. doi: 10.3389/fgene.2015.00235. eCollection 2015. Review.

14.

Mapping the Evolution of Hypervirulent Klebsiella pneumoniae.

Struve C, Roe CC, Stegger M, Stahlhut SG, Hansen DS, Engelthaler DM, Andersen PS, Driebe EM, Keim P, Krogfelt KA.

MBio. 2015 Jul 21;6(4):e00630. doi: 10.1128/mBio.00630-15.

15.

Genomic Analysis of the Emergence and Rapid Global Dissemination of the Clonal Group 258 Klebsiella pneumoniae Pandemic.

Bowers JR, Kitchel B, Driebe EM, MacCannell DR, Roe C, Lemmer D, de Man T, Rasheed JK, Engelthaler DM, Keim P, Limbago BM.

PLoS One. 2015 Jul 21;10(7):e0133727. doi: 10.1371/journal.pone.0133727. eCollection 2015.

16.

Using Whole Genome Analysis to Examine Recombination across Diverse Sequence Types of Staphylococcus aureus.

Driebe EM, Sahl JW, Roe C, Bowers JR, Schupp JM, Gillece JD, Kelley E, Price LB, Pearson TR, Hepp CM, Brzoska PM, Cummings CA, Furtado MR, Andersen PS, Stegger M, Engelthaler DM, Keim PS.

PLoS One. 2015 Jul 10;10(7):e0130955. doi: 10.1371/journal.pone.0130955. eCollection 2015.

17.

Phylogenetically typing bacterial strains from partial SNP genotypes observed from direct sequencing of clinical specimen metagenomic data.

Sahl JW, Schupp JM, Rasko DA, Colman RE, Foster JT, Keim P.

Genome Med. 2015 Jun 9;7(1):52. doi: 10.1186/s13073-015-0176-9. eCollection 2015.

18.

Identification of Burkholderia pseudomallei Near-Neighbor Species in the Northern Territory of Australia.

Ginther JL, Mayo M, Warrington SD, Kaestli M, Mullins T, Wagner DM, Currie BJ, Tuanyok A, Keim P.

PLoS Negl Trop Dis. 2015 Jun 29;9(6):e0003892. doi: 10.1371/journal.pntd.0003892. eCollection 2015 Jun.

19.

Penile Microbiota and Female Partner Bacterial Vaginosis in Rakai, Uganda.

Liu CM, Hungate BA, Tobian AA, Ravel J, Prodger JL, Serwadda D, Kigozi G, Galiwango RM, Nalugoda F, Keim P, Wawer MJ, Price LB, Gray RH.

MBio. 2015 Jun 16;6(3):e00589. doi: 10.1128/mBio.00589-15.

20.

Diverse Genotypes of Yersinia pestis Caused Plague in Madagascar in 2007.

Riehm JM, Projahn M, Vogler AJ, Rajerison M, Andersen G, Hall CM, Zimmermann T, Soanandrasana R, Andrianaivoarimanana V, Straubinger RK, Nottingham R, Keim P, Wagner DM, Scholz HC.

PLoS Negl Trop Dis. 2015 Jun 12;9(6):e0003844. doi: 10.1371/journal.pntd.0003844. eCollection 2015 Jun.

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