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Results: 16

1.

Separating the wheat from the chaff - a strategy to utilize plant genetic resources from ex situ genebanks.

Keilwagen J, Kilian B, Özkan H, Babben S, Perovic D, Mayer KF, Walther A, Poskar CH, Ordon F, Eversole K, Börner A, Ganal M, Knüpffer H, Graner A, Friedel S.

Sci Rep. 2014 Jun 10;4:5231. doi: 10.1038/srep05231.

PMID:
24912875
[PubMed - in process]
Free PMC Article
2.

Area under precision-recall curves for weighted and unweighted data.

Keilwagen J, Grosse I, Grau J.

PLoS One. 2014 Mar 20;9(3):e92209. doi: 10.1371/journal.pone.0092209. eCollection 2014.

PMID:
24651729
[PubMed - in process]
Free PMC Article
3.

On the value of intra-motif dependencies of human insulator protein CTCF.

Eggeling R, Gohr A, Keilwagen J, Mohr M, Posch S, Smith AD, Grosse I.

PLoS One. 2014 Jan 22;9(1):e85629. doi: 10.1371/journal.pone.0085629. eCollection 2014.

PMID:
24465627
[PubMed - in process]
Free PMC Article
4.

A general approach for discriminative de novo motif discovery from high-throughput data.

Grau J, Posch S, Grosse I, Keilwagen J.

Nucleic Acids Res. 2013 Nov;41(21):e197. doi: 10.1093/nar/gkt831. Epub 2013 Sep 20.

PMID:
24057214
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Mineralocorticoid receptor interaction with SP1 generates a new response element for pathophysiologically relevant gene expression.

Meinel S, Ruhs S, Schumann K, Strätz N, Trenkmann K, Schreier B, Grosse I, Keilwagen J, Gekle M, Grossmann C.

Nucleic Acids Res. 2013 Sep;41(17):8045-60. doi: 10.1093/nar/gkt581. Epub 2013 Jul 1.

PMID:
23821666
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Dispom: a discriminative de-novo motif discovery tool based on the jstacs library.

Grau J, Keilwagen J, Gohr A, Paponov IA, Posch S, Seifert M, Strickert M, Grosse I.

J Bioinform Comput Biol. 2013 Feb;11(1):1340006. doi: 10.1142/S0219720013400064. Epub 2013 Jan 21.

PMID:
23427988
[PubMed - indexed for MEDLINE]
7.

Critical assessment of automated flow cytometry data analysis techniques.

Aghaeepour N, Finak G; FlowCAP Consortium; DREAM Consortium, Hoos H, Mosmann TR, Brinkman R, Gottardo R, Scheuermann RH.

Nat Methods. 2013 Mar;10(3):228-38. doi: 10.1038/nmeth.2365. Epub 2013 Feb 10. Erratum in: Nat Methods. 2013 May;10(5):445.

PMID:
23396282
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Evaluation of methods for modeling transcription factor sequence specificity.

Weirauch MT, Cote A, Norel R, Annala M, Zhao Y, Riley TR, Saez-Rodriguez J, Cokelaer T, Vedenko A, Talukder S; DREAM5 Consortium, Bussemaker HJ, Morris QD, Bulyk ML, Stolovitzky G, Hughes TR.

Nat Biotechnol. 2013 Feb;31(2):126-34. doi: 10.1038/nbt.2486. Epub 2013 Jan 27.

PMID:
23354101
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Toward the identification and regulation of the Arabidopsis thaliana ABI3 regulon.

Mönke G, Seifert M, Keilwagen J, Mohr M, Grosse I, Hähnel U, Junker A, Weisshaar B, Conrad U, Bäumlein H, Altschmied L.

Nucleic Acids Res. 2012 Sep 1;40(17):8240-54. Epub 2012 Jun 22.

PMID:
22730287
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Elongation-related functions of LEAFY COTYLEDON1 during the development of Arabidopsis thaliana.

Junker A, Mönke G, Rutten T, Keilwagen J, Seifert M, Thi TM, Renou JP, Balzergue S, Viehöver P, Hähnel U, Ludwig-Müller J, Altschmied L, Conrad U, Weisshaar B, Bäumlein H.

Plant J. 2012 Aug;71(3):427-42. doi: 10.1111/j.1365-313X.2012.04999.x. Epub 2012 May 30.

PMID:
22429691
[PubMed - indexed for MEDLINE]
11.

De-novo discovery of differentially abundant transcription factor binding sites including their positional preference.

Keilwagen J, Grau J, Paponov IA, Posch S, Strickert M, Grosse I.

PLoS Comput Biol. 2011 Feb 10;7(2):e1001070. doi: 10.1371/journal.pcbi.1001070. Erratum in: PLoS Comput Biol. 2011 Oct;7(10). doi: 10.1371/annotation/a0b541dc-472b-4076-a435-499ce9519335.

PMID:
21347314
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Probabilistic approaches to transcription factor binding site prediction.

Posch S, Grau J, Gohr A, Keilwagen J, Grosse I.

Methods Mol Biol. 2010;674:97-119. doi: 10.1007/978-1-60761-854-6_7.

PMID:
20827588
[PubMed - indexed for MEDLINE]
13.

Apples and oranges: avoiding different priors in Bayesian DNA sequence analysis.

Keilwagen J, Grau J, Posch S, Grosse I.

BMC Bioinformatics. 2010 Mar 22;11:149. doi: 10.1186/1471-2105-11-149.

PMID:
20307305
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Unifying generative and discriminative learning principles.

Keilwagen J, Grau J, Posch S, Strickert M, Grosse I.

BMC Bioinformatics. 2010 Feb 22;11:98. doi: 10.1186/1471-2105-11-98.

PMID:
20175896
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

MotifAdjuster: a tool for computational reassessment of transcription factor binding site annotations.

Keilwagen J, Baumbach J, Kohl TA, Grosse I.

Genome Biol. 2009;10(5):R46. doi: 10.1186/gb-2009-10-5-r46. Epub 2009 May 1.

PMID:
19409082
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Utilizing gene pair orientations for HMM-based analysis of promoter array ChIP-chip data.

Seifert M, Keilwagen J, Strickert M, Grosse I.

Bioinformatics. 2009 Aug 15;25(16):2118-25. doi: 10.1093/bioinformatics/btp276. Epub 2009 Apr 28.

PMID:
19401402
[PubMed - indexed for MEDLINE]
Free PMC Article

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