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Results: 7

1.

SADI, SHARE, and the in silico scientific method.

Wilkinson MD, McCarthy L, Vandervalk B, Withers D, Kawas E, Samadian S.

BMC Bioinformatics. 2010 Dec 21;11 Suppl 12:S7. doi: 10.1186/1471-2105-11-S12-S7.

PMID:
21210986
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. The DBCLS BioHackathon Consortium*.

Katayama T, Arakawa K, Nakao M, Ono K, Aoki-Kinoshita KF, Yamamoto Y, Yamaguchi A, Kawashima S, Chun HW, Aerts J, Aranda B, Barboza LH, Bonnal RJ, Bruskiewich R, Bryne JC, Fernández JM, Funahashi A, Gordon PM, Goto N, Groscurth A, Gutteridge A, Holland R, Kano Y, Kawas EA, Kerhornou A, Kibukawa E, Kinjo AR, Kuhn M, Lapp H, Lehvaslaiho H, Nakamura H, Nakamura Y, Nishizawa T, Nobata C, Noguchi T, Oinn TM, Okamoto S, Owen S, Pafilis E, Pocock M, Prins P, Ranzinger R, Reisinger F, Salwinski L, Schreiber M, Senger M, Shigemoto Y, Standley DM, Sugawara H, Tashiro T, Trelles O, Vos RA, Wilkinson MD, York W, Zmasek CM, Asai K, Takagi T.

J Biomed Semantics. 2010 Aug 21;1(1):8. doi: 10.1186/2041-1480-1-8.

PMID:
20727200
[PubMed]
Free PMC Article
3.

OWL2Perl: creating Perl modules from OWL class definitions.

Kawas E, Wilkinson MD.

Bioinformatics. 2010 Sep 15;26(18):2357-8. doi: 10.1093/bioinformatics/btq416. Epub 2010 Jul 13.

PMID:
20628074
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Interoperability with Moby 1.0--it's better than sharing your toothbrush!

BioMoby Consortium, Wilkinson MD, Senger M, Kawas E, Bruskiewich R, Gouzy J, Noirot C, Bardou P, Ng A, Haase D, Saiz Ede A, Wang D, Gibbons F, Gordon PM, Sensen CW, Carrasco JM, Fernández JM, Shen L, Links M, Ng M, Opushneva N, Neerincx PB, Leunissen JA, Ernst R, Twigger S, Usadel B, Good B, Wong Y, Stein L, Crosby W, Karlsson J, Royo R, Párraga I, Ramírez S, Gelpi JL, Trelles O, Pisano DG, Jimenez N, Kerhornou A, Rosset R, Zamacola L, Tarraga J, Huerta-Cepas J, Carazo JM, Dopazo J, Guigo R, Navarro A, Orozco M, Valencia A, Claros MG, Pérez AJ, Aldana J, Rojano M, Fernandez-Santa Cruz R, Navas I, Schiltz G, Farmer A, Gessler D, Schoof H, Groscurth A.

Brief Bioinform. 2008 May;9(3):220-31. doi: 10.1093/bib/bbn003. Epub 2008 Jan 31. Review.

PMID:
18238804
[PubMed - indexed for MEDLINE]
Free Article
5.

DataBiNS: a BioMoby-based data-mining workflow for biological pathways and non-synonymous SNPs.

Song YC, Kawas E, Good BM, Wilkinson MD, Tebbutt SJ.

Bioinformatics. 2007 Mar 15;23(6):780-2. Epub 2007 Jan 18.

PMID:
17237074
[PubMed - indexed for MEDLINE]
Free Article
6.

iHOPerator: user-scripting a personalized bioinformatics Web, starting with the iHOP website.

Good BM, Kawas EA, Kuo BY, Wilkinson MD.

BMC Bioinformatics. 2006 Dec 15;7:534.

PMID:
17173692
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

BioMoby extensions to the Taverna workflow management and enactment software.

Kawas E, Senger M, Wilkinson MD.

BMC Bioinformatics. 2006 Nov 30;7:523.

PMID:
17137515
[PubMed - indexed for MEDLINE]
Free PMC Article

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