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Results: 1 to 20 of 103

1.

A transient disruption of fibroblastic transcriptional regulatory network facilitates trans-differentiation.

Tomaru Y, Hasegawa R, Suzuki T, Sato T, Kubosaki A, Suzuki M, Kawaji H, Forrest AR, Hayashizaki Y; FANTOM Consortium, Shin JW, Suzuki H.

Nucleic Acids Res. 2014 Jul 10. pii: gku567. [Epub ahead of print]

PMID:
25013174
[PubMed - as supplied by publisher]
Free Article
2.

Effect of boron neutron capture therapy for recurrent anaplastic meningioma: an autopsy case report.

Kawaji H, Miyatake SI, Shinmura K, Kawabata S, Tokuyama T, Namba H.

Brain Tumor Pathol. 2014 May 8. [Epub ahead of print]

PMID:
24807102
[PubMed - as supplied by publisher]
3.

Interactive visualization and analysis of large-scale sequencing datasets using ZENBU.

Severin J, Lizio M, Harshbarger J, Kawaji H, Daub CO, Hayashizaki Y; FANTOM Consortium, Bertin N, Forrest AR.

Nat Biotechnol. 2014 Mar;32(3):217-9. doi: 10.1038/nbt.2840. No abstract available.

PMID:
24727769
[PubMed - in process]
4.

Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation.

Morikawa H, Ohkura N, Vandenbon A, Itoh M, Nagao-Sato S, Kawaji H, Lassmann T, Carninci P, Hayashizaki Y, Forrest AR, Standley DM, Date H, Sakaguchi S; FANTOM Consortium.

Proc Natl Acad Sci U S A. 2014 Apr 8;111(14):5289-94. doi: 10.1073/pnas.1312717110. Epub 2014 Mar 27.

PMID:
24706905
[PubMed - indexed for MEDLINE]
5.

Transcriptional profiling of the human fibrillin/LTBP gene family, key regulators of mesenchymal cell functions.

Davis MR, Andersson R, Severin J, de Hoon M, Bertin N, Baillie JK, Kawaji H, Sandelin A, Forrest AR, Summers KM; FANTOM Consortium.

Mol Genet Metab. 2014 May;112(1):73-83. doi: 10.1016/j.ymgme.2013.12.006. Epub 2013 Dec 16.

PMID:
24703491
[PubMed - in process]
Free PMC Article
6.

The evolution of human cells in terms of protein innovation.

Sardar AJ, Oates ME, Fang H, Forrest AR, Kawaji H; FANTOM Consortium, Gough J, Rackham OJ.

Mol Biol Evol. 2014 Jun;31(6):1364-74. doi: 10.1093/molbev/mst139. Epub 2014 Apr 1.

PMID:
24692656
[PubMed - in process]
Free PMC Article
7.

Ceruloplasmin is a novel adipokine which is overexpressed in adipose tissue of obese subjects and in obesity-associated cancer cells.

Arner E, Forrest AR, Ehrlund A, Mejhert N, Itoh M, Kawaji H, Lassmann T, Laurencikiene J, Rydén M, Arner P; FANTOM Consortium.

PLoS One. 2014 Mar 27;9(3):e80274. doi: 10.1371/journal.pone.0080274. eCollection 2014.

PMID:
24676332
[PubMed - in process]
Free PMC Article
8.

Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing.

Kawaji H, Lizio M, Itoh M, Kanamori-Katayama M, Kaiho A, Nishiyori-Sueki H, Shin JW, Kojima-Ishiyama M, Kawano M, Murata M, Ninomiya-Fukuda N, Ishikawa-Kato S, Nagao-Sato S, Noma S, Hayashizaki Y, Forrest AR, Carninci P; FANTOM Consortium.

Genome Res. 2014 Apr;24(4):708-17. doi: 10.1101/gr.156232.113. Epub 2014 Mar 27.

PMID:
24676093
[PubMed - in process]
Free PMC Article
9.

CAGExploreR: an R package for the analysis and visualization of promoter dynamics across multiple experiments.

Dimont E, Hofmann O, Ho Sui SJ, Forrest AR, Kawaji H; the FANTOM Consortium, Hide W.

Bioinformatics. 2014 Mar 27. [Epub ahead of print]

PMID:
24675730
[PubMed - as supplied by publisher]
10.

Transcription and enhancer profiling in human monocyte subsets.

Schmidl C, Renner K, Peter K, Eder R, Lassmann T, Balwierz PJ, Itoh M, Nagao-Sato S, Kawaji H, Carninci P, Suzuki H, Hayashizaki Y, Andreesen R, Hume DA, Hoffmann P, Forrest AR, Kreutz MP, Edinger M, Rehli M; FANTOM consortium.

Blood. 2014 Apr 24;123(17):e90-9. doi: 10.1182/blood-2013-02-484188. Epub 2014 Mar 26.

PMID:
24671955
[PubMed - indexed for MEDLINE]
11.

Redefinition of the human mast cell transcriptome by deep-CAGE sequencing.

Motakis E, Guhl S, Ishizu Y, Itoh M, Kawaji H, de Hoon M, Lassmann T, Carninci P, Hayashizaki Y, Zuberbier T, Forrest AR, Babina M; FANTOM consortium.

Blood. 2014 Apr 24;123(17):e58-67. doi: 10.1182/blood-2013-02-483792. Epub 2014 Mar 26.

PMID:
24671954
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The enhancer and promoter landscape of human regulatory and conventional T-cell subpopulations.

Schmidl C, Hansmann L, Lassmann T, Balwierz PJ, Kawaji H, Itoh M, Kawai J, Nagao-Sato S, Suzuki H, Andreesen R, Hayashizaki Y, Forrest AR, Carninci P, Hoffmann P, Edinger M, Rehli M; FANTOM consortium.

Blood. 2014 Apr 24;123(17):e68-78. doi: 10.1182/blood-2013-02-486944. Epub 2014 Mar 26.

PMID:
24671953
[PubMed - indexed for MEDLINE]
13.

Analysis of the DNA methylome and transcriptome in granulopoiesis reveals timed changes and dynamic enhancer methylation.

Rönnerblad M, Andersson R, Olofsson T, Douagi I, Karimi M, Lehmann S, Hoof I, de Hoon M, Itoh M, Nagao-Sato S, Kawaji H, Lassmann T, Carninci P, Hayashizaki Y, Forrest AR, Sandelin A, Ekwall K, Arner E, Lennartsson A; FANTOM consortium.

Blood. 2014 Apr 24;123(17):e79-89. doi: 10.1182/blood-2013-02-482893. Epub 2014 Mar 26.

PMID:
24671952
[PubMed - indexed for MEDLINE]
14.

High-throughput transcription profiling identifies putative epigenetic regulators of hematopoiesis.

Prasad P, Rönnerblad M, Arner E, Itoh M, Kawaji H, Lassmann T, Daub CO, Forrest AR, Lennartsson A, Ekwall K; FANTOM consortium.

Blood. 2014 Apr 24;123(17):e46-57. doi: 10.1182/blood-2013-02-483537. Epub 2014 Mar 26.

PMID:
24671951
[PubMed - indexed for MEDLINE]
15.

A promoter-level mammalian expression atlas.

FANTOM Consortium and the RIKEN PMI and CLST (DGT), Forrest AR, Kawaji H, Rehli M, Baillie JK, de Hoon MJ, Lassmann T, Itoh M, Summers KM, Suzuki H, Daub CO, Kawai J, Heutink P, Hide W, Freeman TC, Lenhard B, Bajic VB, Taylor MS, Makeev VJ, Sandelin A, Hume DA, Carninci P, Hayashizaki Y.

Nature. 2014 Mar 27;507(7493):462-70. doi: 10.1038/nature13182.

PMID:
24670764
[PubMed - indexed for MEDLINE]
16.

An atlas of active enhancers across human cell types and tissues.

Andersson R, Gebhard C, Miguel-Escalada I, Hoof I, Bornholdt J, Boyd M, Chen Y, Zhao X, Schmidl C, Suzuki T, Ntini E, Arner E, Valen E, Li K, Schwarzfischer L, Glatz D, Raithel J, Lilje B, Rapin N, Bagger FO, Jørgensen M, Andersen PR, Bertin N, Rackham O, Burroughs AM, Baillie JK, Ishizu Y, Shimizu Y, Furuhata E, Maeda S, Negishi Y, Mungall CJ, Meehan TF, Lassmann T, Itoh M, Kawaji H, Kondo N, Kawai J, Lennartsson A, Daub CO, Heutink P, Hume DA, Jensen TH, Suzuki H, Hayashizaki Y, Müller F; FANTOM Consortium, Forrest AR, Carninci P, Rehli M, Sandelin A.

Nature. 2014 Mar 27;507(7493):455-61. doi: 10.1038/nature12787.

PMID:
24670763
[PubMed - indexed for MEDLINE]
17.

Chromatin states reveal functional associations for globally defined transcription start sites in four human cell lines.

Rye M, Sandve GK, Daub CO, Kawaji H, Carninci P, Forrest AR, Drabløs F; FANTOM consortium.

BMC Genomics. 2014 Mar 26;15:120. doi: 10.1186/1471-2164-15-120.

PMID:
24669905
[PubMed - in process]
Free PMC Article
18.

Effects of cytosine methylation on transcription factor binding sites.

Medvedeva YA, Khamis AM, Kulakovskiy IV, Ba-Alawi W, Bhuyan MS, Kawaji H, Lassmann T, Harbers M, Forrest AR, Bajic VB; FANTOM consortium.

BMC Genomics. 2014 Mar 26;15:119. doi: 10.1186/1471-2164-15-119.

PMID:
24669864
[PubMed - in process]
Free PMC Article
19.

Negative differential resistance in MX- and MMX-type iodide-bridged platinum complexes.

Iguchi H, Takaishi S, Jiang D, Xie J, Yamashita M, Uchida A, Kawaji H.

Inorg Chem. 2013 Dec 16;52(24):13812-4. doi: 10.1021/ic402277x. Epub 2013 Nov 21.

PMID:
24261651
[PubMed - in process]
20.

Evaluation of tumor blood flow after feeder embolization in meningiomas by arterial spin-labeling perfusion magnetic resonance imaging.

Kawaji H, Koizumi S, Sakai N, Yamasaki T, Hiramatsu H, Kanoko Y, Kamiya M, Yamashita S, Takehara Y, Sakahara H, Namba H.

J Neuroradiol. 2013 Oct;40(4):303-6. doi: 10.1016/j.neurad.2013.04.005. Epub 2013 Oct 4.

PMID:
24095290
[PubMed - indexed for MEDLINE]

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