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Results: 17

1.

Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.

Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutiérrez RA.

BMC Genomics. 2013 Oct 11;14:701. doi: 10.1186/1471-2164-14-701.

PMID:
24119003
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Plasticity regulators modulate specific root traits in discrete nitrogen environments.

Gifford ML, Banta JA, Katari MS, Hulsmans J, Chen L, Ristova D, Tranchina D, Purugganan MD, Coruzzi GM, Birnbaum KD.

PLoS Genet. 2013;9(9):e1003760. doi: 10.1371/journal.pgen.1003760. Epub 2013 Sep 5.

PMID:
24039603
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

A functional phylogenomic view of the seed plants.

Lee EK, Cibrian-Jaramillo A, Kolokotronis SO, Katari MS, Stamatakis A, Ott M, Chiu JC, Little DP, Stevenson DW, McCombie WR, Martienssen RA, Coruzzi G, Desalle R.

PLoS Genet. 2011 Dec;7(12):e1002411. doi: 10.1371/journal.pgen.1002411. Epub 2011 Dec 15.

PMID:
22194700
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Modeling the global effect of the basic-leucine zipper transcription factor 1 (bZIP1) on nitrogen and light regulation in Arabidopsis.

Obertello M, Krouk G, Katari MS, Runko SJ, Coruzzi GM.

BMC Syst Biol. 2010 Aug 12;4:111. doi: 10.1186/1752-0509-4-111.

PMID:
20704717
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Using phylogenomic patterns and gene ontology to identify proteins of importance in plant evolution.

Cibrián-Jaramillo A, De la Torre-Bárcena JE, Lee EK, Katari MS, Little DP, Stevenson DW, Martienssen R, Coruzzi GM, DeSalle R.

Genome Biol Evol. 2010 Jul 12;2:225-39. doi: 10.1093/gbe/evq012.

PMID:
20624728
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

In silico evaluation of predicted regulatory interactions in Arabidopsis thaliana.

Nero D, Katari MS, Kelfer J, Tranchina D, Coruzzi GM.

BMC Bioinformatics. 2009 Dec 21;10:435. doi: 10.1186/1471-2105-10-435.

PMID:
20025756
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

VirtualPlant: a software platform to support systems biology research.

Katari MS, Nowicki SD, Aceituno FF, Nero D, Kelfer J, Thompson LP, Cabello JM, Davidson RS, Goldberg AP, Shasha DE, Coruzzi GM, Gutiérrez RA.

Plant Physiol. 2010 Feb;152(2):500-15. doi: 10.1104/pp.109.147025. Epub 2009 Dec 9.

PMID:
20007449
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The impact of outgroup choice and missing data on major seed plant phylogenetics using genome-wide EST data.

de la Torre-Bárcena JE, Kolokotronis SO, Lee EK, Stevenson DW, Brenner ED, Katari MS, Coruzzi GM, DeSalle R.

PLoS One. 2009 Jun 2;4(6):e5764. doi: 10.1371/journal.pone.0005764.

PMID:
19503618
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

An integrated genetic, genomic and systems approach defines gene networks regulated by the interaction of light and carbon signaling pathways in Arabidopsis.

Thum KE, Shin MJ, Gutiérrez RA, Mukherjee I, Katari MS, Nero D, Shasha D, Coruzzi GM.

BMC Syst Biol. 2008 Apr 4;2:31. doi: 10.1186/1752-0509-2-31.

PMID:
18387196
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1.

Gutiérrez RA, Stokes TL, Thum K, Xu X, Obertello M, Katari MS, Tanurdzic M, Dean A, Nero DC, McClung CR, Coruzzi GM.

Proc Natl Acad Sci U S A. 2008 Mar 25;105(12):4939-44. doi: 10.1073/pnas.0800211105. Epub 2008 Mar 14.

PMID:
18344319
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Sungear: interactive visualization and functional analysis of genomic datasets.

Poultney CS, Gutiérrez RA, Katari MS, Gifford ML, Paley WB, Coruzzi GM, Shasha DE.

Bioinformatics. 2007 Jan 15;23(2):259-61. Epub 2006 Oct 2.

PMID:
17018536
[PubMed - indexed for MEDLINE]
Free Article
12.

ESTimating plant phylogeny: lessons from partitioning.

de la Torre JE, Egan MG, Katari MS, Brenner ED, Stevenson DW, Coruzzi GM, DeSalle R.

BMC Evol Biol. 2006 Jun 15;6:48.

PMID:
16776834
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

EST analysis in Ginkgo biloba: an assessment of conserved developmental regulators and gymnosperm specific genes.

Brenner ED, Katari MS, Stevenson DW, Rudd SA, Douglas AW, Moss WN, Twigg RW, Runko SJ, Stellari GM, McCombie WR, Coruzzi GM.

BMC Genomics. 2005 Oct 15;6:143.

PMID:
16225698
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana.

Katari MS, Balija V, Wilson RK, Martienssen RA, McCombie WR.

Genome Res. 2005 Apr;15(4):496-504.

PMID:
15805491
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Expressed sequence tag analysis in Cycas, the most primitive living seed plant.

Brenner ED, Stevenson DW, McCombie RW, Katari MS, Rudd SA, Mayer KF, Palenchar PM, Runko SJ, Twigg RW, Dai G, Martienssen RA, Benfey PN, Coruzzi GM.

Genome Biol. 2003;4(12):R78. Epub 2003 Nov 18.

PMID:
14659015
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Identification of mesoderm development (mesd) candidate genes by comparative mapping and genome sequence analysis.

Wines ME, Lee L, Katari MS, Zhang L, DeRossi C, Shi Y, Perkins S, Feldman M, McCombie WR, Holdener BC.

Genomics. 2001 Feb 15;72(1):88-98.

PMID:
11247670
[PubMed - indexed for MEDLINE]
17.

Gangliosides of monocyte-derived macrophages of adults with advanced HIV infection show reduced surface accessibility.

Berenson CS, Gallery MA, Katari MS, Foster EW, Pattoli MA.

J Leukoc Biol. 1998 Sep;64(3):311-21.

PMID:
9738657
[PubMed - indexed for MEDLINE]
Free Article

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