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Use of genomics to track bovine tuberculosis transmission.

Kao RR, Price-Carter M, Robbe-Austerman S.

Rev Sci Tech. 2016 Apr;35(1):241-68. doi: 10.20506/rst.35.1.2430.


Use of bacterial whole-genome sequencing to investigate local persistence and spread in bovine tuberculosis.

Trewby H, Wright D, Breadon EL, Lycett SJ, Mallon TR, McCormick C, Johnson P, Orton RJ, Allen AR, Galbraith J, Herzyk P, Skuce RA, Biek R, Kao RR.

Epidemics. 2016 Mar;14:26-35. doi: 10.1016/j.epidem.2015.08.003. Epub 2015 Oct 19.


Broadwick: a framework for computational epidemiology.

O'Hare A, Lycett SJ, Doherty T, M Salvador LC, Kao RR.

BMC Bioinformatics. 2016 Feb 4;17:65. doi: 10.1186/s12859-016-0903-2.


Plasmodium knowlesi transmission: integrating quantitative approaches from epidemiology and ecology to understand malaria as a zoonosis.

Brock PM, Fornace KM, Parmiter M, Cox J, Drakeley CJ, Ferguson HM, Kao RR.

Parasitology. 2016 Apr;143(4):389-400. doi: 10.1017/S0031182015001821. Epub 2016 Jan 28.


Determining the impact of badger culling on the incidence of TB in cattle.

Kao RR.

Vet Rec. 2015 Oct 24;177(16):415-6. doi: 10.1136/vr.h5493. No abstract available.


Herd-level bovine tuberculosis risk factors: assessing the role of low-level badger population disturbance.

Wright DM, Reid N, Ian Montgomery W, Allen AR, Skuce RA, Kao RR.

Sci Rep. 2015 Aug 17;5:13062. doi: 10.1038/srep13062.


A few bad apples: a model of disease influenced agent behaviour in a heterogeneous contact environment.

Enright J, Kao RR.

PLoS One. 2015 Mar 3;10(3):e0118127. doi: 10.1371/journal.pone.0118127. eCollection 2015.


Estimating epidemiological parameters for bovine tuberculosis in British cattle using a Bayesian partial-likelihood approach.

O'Hare A, Orton RJ, Bessell PR, Kao RR.

Proc Biol Sci. 2014 Apr 9;281(1783):20140248. doi: 10.1098/rspb.2014.0248. Print 2014 May 22.


Supersize me: how whole-genome sequencing and big data are transforming epidemiology.

Kao RR, Haydon DT, Lycett SJ, Murcia PR.

Trends Microbiol. 2014 May;22(5):282-91. doi: 10.1016/j.tim.2014.02.011. Epub 2014 Mar 22. Review.


A metapopulation model for highly pathogenic avian influenza: implications for compartmentalization as a control measure.

Nickbakhsh S, Matthews L, Reid SW, Kao RR.

Epidemiol Infect. 2014 Sep;142(9):1813-25. doi: 10.1017/S0950268813002963. Epub 2013 Dec 5.


An online survey of horse-owners in Great Britain.

Boden LA, Parkin TD, Yates J, Mellor D, Kao RR.

BMC Vet Res. 2013 Sep 28;9:188. doi: 10.1186/1746-6148-9-188.


A restatement of the natural science evidence base relevant to the control of bovine tuberculosis in Great Britain.

Godfray HC, Donnelly CA, Kao RR, Macdonald DW, McDonald RA, Petrokofsky G, Wood JL, Woodroffe R, Young DB, McLean AR.

Proc Biol Sci. 2013 Aug 7;280(1768):20131634. doi: 10.1098/rspb.2013.1634. Print 2013 Oct 7.


Implications of within-farm transmission for network dynamics: consequences for the spread of avian influenza.

Nickbakhsh S, Matthews L, Dent JE, Innocent GT, Arnold ME, Reid SW, Kao RR.

Epidemics. 2013 Jun;5(2):67-76. doi: 10.1016/j.epidem.2013.03.001. Epub 2013 Mar 15.


Whole genome sequencing reveals local transmission patterns of Mycobacterium bovis in sympatric cattle and badger populations.

Biek R, O'Hare A, Wright D, Mallon T, McCormick C, Orton RJ, McDowell S, Trewby H, Skuce RA, Kao RR.

PLoS Pathog. 2012;8(11):e1003008. doi: 10.1371/journal.ppat.1003008. Epub 2012 Nov 29.


Developing a framework for risk-based surveillance of tuberculosis in cattle: a case study of its application in Scotland.

Bessell PR, Orton R, O'Hare A, Mellor DJ, Logue D, Kao RR.

Epidemiol Infect. 2013 Feb;141(2):314-23. doi: 10.1017/S0950268812000635. Epub 2012 Apr 26. Erratum in: Epidemiol Infect. 2013 Feb;141(2):324.


Risk factors for bovine Tuberculosis at the national level in Great Britain.

Bessell PR, Orton R, White PC, Hutchings MR, Kao RR.

BMC Vet Res. 2012 May 7;8:51. doi: 10.1186/1746-6148-8-51.


Risk of Foot-and-Mouth Disease spread due to sole occupancy authorities and linked cattle holdings.

Orton RJ, Bessell PR, Birch CP, O'Hare A, Kao RR.

PLoS One. 2012;7(4):e35089. doi: 10.1371/journal.pone.0035089. Epub 2012 Apr 19.


Summary of current knowledge of the size and spatial distribution of the horse population within Great Britain.

Boden LA, Parkin TD, Yates J, Mellor D, Kao RR.

BMC Vet Res. 2012 Apr 4;8:43. doi: 10.1186/1746-6148-8-43.


An ecological and comparative perspective on the control of bovine tuberculosis in Great Britain and the Republic of Ireland.

O'Connor CM, Haydon DT, Kao RR.

Prev Vet Med. 2012 May 1;104(3-4):185-97. doi: 10.1016/j.prevetmed.2011.11.010. Epub 2011 Dec 21. Review.

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