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Results: 1 to 20 of 28

1.

Hybrid curation of gene-mutation relations combining automated extraction and crowdsourcing.

Burger JD, Doughty E, Khare R, Wei CH, Mishra R, Aberdeen J, Tresner-Kirsch D, Wellner B, Kann MG, Lu Z, Hirschman L.

Database (Oxford). 2014 Sep 22;2014. pii: bau094. doi: 10.1093/database/bau094. Print 2014.

PMID:
25246425
[PubMed - in process]
Free PMC Article
2.

Domain landscapes of somatic mutations in cancer.

Peterson TA, Park D, Kann MG.

AMIA Jt Summits Transl Sci Proc. 2013 Mar 18;2013:136. eCollection 2013.

PMID:
24303323
[PubMed]
Free Article
3.

Towards precision medicine: advances in computational approaches for the analysis of human variants.

Peterson TA, Doughty E, Kann MG.

J Mol Biol. 2013 Nov 1;425(21):4047-63. doi: 10.1016/j.jmb.2013.08.008. Epub 2013 Aug 17. Review.

PMID:
23962656
[PubMed - indexed for MEDLINE]
4.

A protein domain-centric approach for the comparative analysis of human and yeast phenotypically relevant mutations.

Peterson TA, Park D, Kann MG.

BMC Genomics. 2013;14 Suppl 3:S5. doi: 10.1186/1471-2164-14-S3-S5. Epub 2013 May 28.

PMID:
23819456
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Modeling cell heterogeneity: from single-cell variations to mixed cells.

Batchelor E, Kann MG, Przytycka TM, Raphael BJ, Wojtowicz D.

Pac Symp Biocomput. 2013:445-50.

PMID:
23424148
[PubMed - indexed for MEDLINE]
Free Article
6.

Chapter 4: Protein interactions and disease.

Gonzalez MW, Kann MG.

PLoS Comput Biol. 2012;8(12):e1002819. doi: 10.1371/journal.pcbi.1002819. Epub 2012 Dec 27.

PMID:
23300410
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Domain landscapes of somatic mutations in cancer.

Nehrt NL, Peterson TA, Park D, Kann MG.

BMC Genomics. 2012 Jun 18;13 Suppl 4:S9. doi: 10.1186/1471-2164-13-S4-S9.

PMID:
22759657
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

A mutation-centric approach to identifying pharmacogenomic relations in text.

Rance B, Doughty E, Demner-Fushman D, Kann MG, Bodenreider O.

J Biomed Inform. 2012 Oct;45(5):835-41. doi: 10.1016/j.jbi.2012.05.003. Epub 2012 Jun 7.

PMID:
22683993
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Regulatory role of suppressive motifs from commensal DNA.

Bouladoux N, Hall JA, Grainger JR, dos Santos LM, Kann MG, Nagarajan V, Verthelyi D, Belkaid Y.

Mucosal Immunol. 2012 Nov;5(6):623-34. doi: 10.1038/mi.2012.36. Epub 2012 May 23.

PMID:
22617839
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Translating Mendelian and complex inheritance of Alzheimer's disease genes for predicting unique personal genome variants.

Regan K, Wang K, Doughty E, Li H, Li J, Lee Y, Kann MG, Lussier YA.

J Am Med Inform Assoc. 2012 Mar-Apr;19(2):306-16. doi: 10.1136/amiajnl-2011-000656.

PMID:
22319180
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Incorporating molecular and functional context into the analysis and prioritization of human variants associated with cancer.

Peterson TA, Nehrt NL, Park D, Kann MG.

J Am Med Inform Assoc. 2012 Mar-Apr;19(2):275-83. doi: 10.1136/amiajnl-2011-000655.

PMID:
22319177
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Bioinformatics for personal genome interpretation.

Capriotti E, Nehrt NL, Kann MG, Bromberg Y.

Brief Bioinform. 2012 Jul;13(4):495-512. Epub 2012 Jan 13. Review.

PMID:
22247263
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Toward an automatic method for extracting cancer- and other disease-related point mutations from the biomedical literature.

Doughty E, Kertesz-Farkas A, Bodenreider O, Thompson G, Adadey A, Peterson T, Kann MG.

Bioinformatics. 2011 Feb 1;27(3):408-15. doi: 10.1093/bioinformatics/btq667. Epub 2010 Dec 7.

PMID:
21138947
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

DMDM: domain mapping of disease mutations.

Peterson TA, Adadey A, Santana-Cruz I, Sun Y, Winder A, Kann MG.

Bioinformatics. 2010 Oct 1;26(19):2458-9. doi: 10.1093/bioinformatics/btq447. Epub 2010 Aug 4.

PMID:
20685956
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Threshold Average Precision (TAP-k): a measure of retrieval designed for bioinformatics.

Carroll HD, Kann MG, Sheetlin SL, Spouge JL.

Bioinformatics. 2010 Jul 15;26(14):1708-13. doi: 10.1093/bioinformatics/btq270. Epub 2010 May 26.

PMID:
20505002
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

In silico functional profiling of human disease-associated and polymorphic amino acid substitutions.

Mort M, Evani US, Krishnan VG, Kamati KK, Baenziger PH, Bagchi A, Peters BJ, Sathyesh R, Li B, Sun Y, Xue B, Shah NH, Kann MG, Cooper DN, Radivojac P, Mooney SD.

Hum Mutat. 2010 Mar;31(3):335-46. doi: 10.1002/humu.21192.

PMID:
20052762
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Advances in translational bioinformatics: computational approaches for the hunting of disease genes.

Kann MG.

Brief Bioinform. 2010 Jan;11(1):96-110. doi: 10.1093/bib/bbp048. Epub 2009 Dec 10.

PMID:
20007728
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Correlated evolution of interacting proteins: looking behind the mirrortree.

Kann MG, Shoemaker BA, Panchenko AR, Przytycka TM.

J Mol Biol. 2009 Jan 9;385(1):91-8. doi: 10.1016/j.jmb.2008.09.078. Epub 2008 Oct 9.

PMID:
18930732
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Gain and loss of phosphorylation sites in human cancer.

Radivojac P, Baenziger PH, Kann MG, Mort ME, Hahn MW, Mooney SD.

Bioinformatics. 2008 Aug 15;24(16):i241-7. doi: 10.1093/bioinformatics/btn267.

PMID:
18689832
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Transcriptional interactions during smallpox infection and identification of early infection biomarkers.

Valdivia-Granda WA, Kann MG, Malaga J.

Pac Symp Biocomput. 2007:100-11.

PMID:
17992748
[PubMed - indexed for MEDLINE]
Free Article

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