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Results: 1 to 20 of 27

1.

Genomics and Proteomics Provide New Insight into the Commensal and Pathogenic Lifestyles of Bovine and Human-associated Staphylococcus epidermidis strains.

Savijoki K, Iivanainen A, Siljamäki P, Laine PK, Paulin L, Karonen T, Pyörälä S, Kankainen M, Nyman TA, Salomäki T, Koskinen P, Holm L, Simojoki H, Taponen S, Sukura A, Kalkkinen N, Auvinen P, Varmanen P.

J Proteome Res. 2014 Jul 11. [Epub ahead of print]

PMID:
25014494
[PubMed - as supplied by publisher]
2.

Comparative Proteome Profiling of Bovine and Human Staphylococcus epidermidis Strains for Screening Specifically Expressed Virulence and Adaptation Proteins.

Siljamäki P, Varmanen P, Kankainen M, Pyörälä S, Karonen T, Iivanainen A, Auvinen P, Paulin L, Laine PK, Taponen S, Simojoki H, Sukura A, Nyman TA, Savijoki K.

Proteomics. 2014 Jun 7. doi: 10.1002/pmic.201300275. [Epub ahead of print]

PMID:
24909406
[PubMed - as supplied by publisher]
3.

Comparative Exoprotein Profiling of Different Staphylococcus epidermidis Strains Reveals Potential Link between Nonclassical Protein Export and Virulence.

Siljamäki P, Varmanen P, Kankainen M, Sukura A, Savijoki K, Nyman TA.

J Proteome Res. 2014 Jul 3;13(7):3249-61. doi: 10.1021/pr500075j. Epub 2014 Jun 2.

PMID:
24840314
[PubMed - in process]
4.

Effects of ellagitannin-rich berries on blood lipids, gut microbiota, and urolithin production in human subjects with symptoms of metabolic syndrome.

Puupponen-Pimiä R, Seppänen-Laakso T, Kankainen M, Maukonen J, Törrönen R, Kolehmainen M, Leppänen T, Moilanen E, Nohynek L, Aura AM, Poutanen K, Tómas-Barberán FA, Espín JC, Oksman-Caldentey KM.

Mol Nutr Food Res. 2013 Dec;57(12):2258-63. doi: 10.1002/mnfr.201300280. Epub 2013 Aug 12.

PMID:
23934737
[PubMed - in process]
5.

Systems-level analysis of clinically different phenotypes of juvenile nasopharyngeal angiofibromas.

Renkonen S, Kankainen M, Hagström J, Haglund C, Monni O, Mäkitie AA.

Laryngoscope. 2012 Dec;122(12):2728-35. doi: 10.1002/lary.23592. Epub 2012 Sep 10.

PMID:
22965421
[PubMed - indexed for MEDLINE]
6.

Nonpathogenic Lactobacillus rhamnosus activates the inflammasome and antiviral responses in human macrophages.

Miettinen M, Pietilä TE, Kekkonen RA, Kankainen M, Latvala S, Pirhonen J, Österlund P, Korpela R, Julkunen I.

Gut Microbes. 2012 Nov-Dec;3(6):510-22. doi: 10.4161/gmic.21736. Epub 2012 Aug 16.

PMID:
22895087
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

BLANNOTATOR: enhanced homology-based function prediction of bacterial proteins.

Kankainen M, Ojala T, Holm L.

BMC Bioinformatics. 2012 Feb 15;13:33. doi: 10.1186/1471-2105-13-33.

PMID:
22335941
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Effect of acid stress on protein expression and phosphorylation in Lactobacillus rhamnosus GG.

Koponen J, Laakso K, Koskenniemi K, Kankainen M, Savijoki K, Nyman TA, de Vos WM, Tynkkynen S, Kalkkinen N, Varmanen P.

J Proteomics. 2012 Feb 2;75(4):1357-74. doi: 10.1016/j.jprot.2011.11.009. Epub 2011 Nov 16.

PMID:
22119544
[PubMed - indexed for MEDLINE]
9.

Growth phase-associated changes in the proteome and transcriptome of Lactobacillus rhamnosus GG in industrial-type whey medium.

Laakso K, Koskenniemi K, Koponen J, Kankainen M, Surakka A, Salusjärvi T, Auvinen P, Savijoki K, Nyman TA, Kalkkinen N, Tynkkynen S, Varmanen P.

Microb Biotechnol. 2011 Nov;4(6):746-66. doi: 10.1111/j.1751-7915.2011.00275.x. Epub 2011 Sep 1.

PMID:
21883975
[PubMed - in process]
Free PMC Article
10.

Identification of regulatory elements in the AGT1 promoter of ale and lager strains of brewer's yeast.

Vidgren V, Kankainen M, Londesborough J, Ruohonen L.

Yeast. 2011 Aug;28(8):579-94. doi: 10.1002/yea.1888. Epub 2011 Jul 13.

PMID:
21755532
[PubMed - indexed for MEDLINE]
11.

Adhesive polypeptides of Staphylococcus aureus identified using a novel secretion library technique in Escherichia coli.

Kylväjä R, Kankainen M, Holm L, Westerlund-Wikström B.

BMC Microbiol. 2011 May 27;11:117. doi: 10.1186/1471-2180-11-117.

PMID:
21615970
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Comparative proteome cataloging of Lactobacillus rhamnosus strains GG and Lc705.

Savijoki K, Lietzén N, Kankainen M, Alatossava T, Koskenniemi K, Varmanen P, Nyman TA.

J Proteome Res. 2011 Aug 5;10(8):3460-73. doi: 10.1021/pr2000896. Epub 2011 Jun 17.

PMID:
21615180
[PubMed - indexed for MEDLINE]
13.

MPEA--metabolite pathway enrichment analysis.

Kankainen M, Gopalacharyulu P, Holm L, Oresic M.

Bioinformatics. 2011 Jul 1;27(13):1878-9. doi: 10.1093/bioinformatics/btr278. Epub 2011 May 5.

PMID:
21551139
[PubMed - indexed for MEDLINE]
Free Article
14.

Probiotic Lactobacillus rhamnosus downregulates FCER1 and HRH4 expression in human mast cells.

Oksaharju A, Kankainen M, Kekkonen RA, Lindstedt KA, Kovanen PT, Korpela R, Miettinen M.

World J Gastroenterol. 2011 Feb 14;17(6):750-9. doi: 10.3748/wjg.v17.i6.750.

PMID:
21390145
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Proteomics and transcriptomics characterization of bile stress response in probiotic Lactobacillus rhamnosus GG.

Koskenniemi K, Laakso K, Koponen J, Kankainen M, Greco D, Auvinen P, Savijoki K, Nyman TA, Surakka A, Salusjärvi T, de Vos WM, Tynkkynen S, Kalkkinen N, Varmanen P.

Mol Cell Proteomics. 2011 Feb;10(2):M110.002741. doi: 10.1074/mcp.M110.002741. Epub 2010 Nov 15.

PMID:
21078892
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Genome sequence of Lactobacillus crispatus ST1.

Ojala T, Kuparinen V, Koskinen JP, Alatalo E, Holm L, Auvinen P, Edelman S, Westerlund-Wikström B, Korhonen TK, Paulin L, Kankainen M.

J Bacteriol. 2010 Jul;192(13):3547-8. doi: 10.1128/JB.00399-10. Epub 2010 Apr 30.

PMID:
20435723
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Mucosal adhesion properties of the probiotic Lactobacillus rhamnosus GG SpaCBA and SpaFED pilin subunits.

von Ossowski I, Reunanen J, Satokari R, Vesterlund S, Kankainen M, Huhtinen H, Tynkkynen S, Salminen S, de Vos WM, Palva A.

Appl Environ Microbiol. 2010 Apr;76(7):2049-57. doi: 10.1128/AEM.01958-09. Epub 2010 Jan 29.

PMID:
20118368
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Comparative genomic analysis of Lactobacillus rhamnosus GG reveals pili containing a human- mucus binding protein.

Kankainen M, Paulin L, Tynkkynen S, von Ossowski I, Reunanen J, Partanen P, Satokari R, Vesterlund S, Hendrickx AP, Lebeer S, De Keersmaecker SC, Vanderleyden J, Hämäläinen T, Laukkanen S, Salovuori N, Ritari J, Alatalo E, Korpela R, Mattila-Sandholm T, Lassig A, Hatakka K, Kinnunen KT, Karjalainen H, Saxelin M, Laakso K, Surakka A, Palva A, Salusjärvi T, Auvinen P, de Vos WM.

Proc Natl Acad Sci U S A. 2009 Oct 6;106(40):17193-8. doi: 10.1073/pnas.0908876106. Epub 2009 Sep 17.

PMID:
19805152
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Proteome analysis of Lactobacillus rhamnosus GG using 2-D DIGE and mass spectrometry shows differential protein production in laboratory and industrial-type growth media.

Koskenniemi K, Koponen J, Kankainen M, Savijoki K, Tynkkynen S, de Vos WM, Kalkkinen N, Varmanen P.

J Proteome Res. 2009 Nov;8(11):4993-5007. doi: 10.1021/pr9003823.

PMID:
19780546
[PubMed - indexed for MEDLINE]
20.

LOCP--locating pilus operons in gram-positive bacteria.

Plyusnin I, Holm L, Kankainen M.

Bioinformatics. 2009 May 1;25(9):1187-8. doi: 10.1093/bioinformatics/btp127. Epub 2009 Mar 4.

PMID:
19261721
[PubMed - indexed for MEDLINE]
Free Article

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