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Results: 18

1.

Structural analysis of human 2'-O-ribose methyltransferases involved in mRNA cap structure formation.

Smietanski M, Werner M, Purta E, Kaminska KH, Stepinski J, Darzynkiewicz E, Nowotny M, Bujnicki JM.

Nat Commun. 2014;5:3004. doi: 10.1038/ncomms4004.

PMID:
24402442
[PubMed - in process]
Free PMC Article
2.

Characterization of drug-induced transcriptional modules: towards drug repositioning and functional understanding.

Iskar M, Zeller G, Blattmann P, Campillos M, Kuhn M, Kaminska KH, Runz H, Gavin AC, Pepperkok R, van Noort V, Bork P.

Mol Syst Biol. 2013;9:662. doi: 10.1038/msb.2013.20.

PMID:
23632384
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Delineation of structural domains and identification of functionally important residues in DNA repair enzyme exonuclease VII.

Poleszak K, Kaminska KH, Dunin-Horkawicz S, Lupas A, Skowronek KJ, Bujnicki JM.

Nucleic Acids Res. 2012 Sep;40(16):8163-74. doi: 10.1093/nar/gks547. Epub 2012 Jun 20.

PMID:
22718974
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Correction: Cell death upon epigenetic genome methylation: a novel function of methyl-specific deoxyribonucleases.

Fukuda E, Kaminska KH, Bujnicki JM, Kobayashi I.

Genome Biol. 2012 Jan 15;12(11):412. No abstract available.

PMID:
24576692
[PubMed - as supplied by publisher]
Free PMC Article
5.

2'-O-ribose methylation of cap2 in human: function and evolution in a horizontally mobile family.

Werner M, Purta E, Kaminska KH, Cymerman IA, Campbell DA, Mittra B, Zamudio JR, Sturm NR, Jaworski J, Bujnicki JM.

Nucleic Acids Res. 2011 Jun;39(11):4756-68. doi: 10.1093/nar/gkr038. Epub 2011 Feb 9.

PMID:
21310715
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Structural basis for the methylation of G1405 in 16S rRNA by aminoglycoside resistance methyltransferase Sgm from an antibiotic producer: a diversity of active sites in m7G methyltransferases.

Husain N, Tkaczuk KL, Tulsidas SR, Kaminska KH, Cubrilo S, Maravić-Vlahovicek G, Bujnicki JM, Sivaraman J.

Nucleic Acids Res. 2010 Jul;38(12):4120-32. doi: 10.1093/nar/gkq122. Epub 2010 Mar 1.

PMID:
20194115
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

The YTH domain is a novel RNA binding domain.

Zhang Z, Theler D, Kaminska KH, Hiller M, de la Grange P, Pudimat R, Rafalska I, Heinrich B, Bujnicki JM, Allain FH, Stamm S.

J Biol Chem. 2010 May 7;285(19):14701-10. doi: 10.1074/jbc.M110.104711. Epub 2010 Feb 18.

PMID:
20167602
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

A putative mobile genetic element carrying a novel type IIF restriction-modification system (PluTI).

Khan F, Furuta Y, Kawai M, Kaminska KH, Ishikawa K, Bujnicki JM, Kobayashi I.

Nucleic Acids Res. 2010 May;38(9):3019-30. doi: 10.1093/nar/gkp1221. Epub 2010 Jan 13.

PMID:
20071747
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Insights into the structure, function and evolution of the radical-SAM 23S rRNA methyltransferase Cfr that confers antibiotic resistance in bacteria.

Kaminska KH, Purta E, Hansen LH, Bujnicki JM, Vester B, Long KS.

Nucleic Acids Res. 2010 Mar;38(5):1652-63. doi: 10.1093/nar/gkp1142. Epub 2009 Dec 10.

PMID:
20007606
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

SMN-assisted assembly of snRNP-specific Sm cores in trypanosomes.

Palfi Z, Jaé N, Preusser C, Kaminska KH, Bujnicki JM, Lee JH, Günzl A, Kambach C, Urlaub H, Bindereif A.

Genes Dev. 2009 Jul 15;23(14):1650-64. doi: 10.1101/gad.526109.

PMID:
19605687
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Cell death upon epigenetic genome methylation: a novel function of methyl-specific deoxyribonucleases.

Fukuda E, Kaminska KH, Bujnicki JM, Kobayashi I.

Genome Biol. 2008;9(11):R163. doi: 10.1186/gb-2008-9-11-r163. Epub 2008 Nov 21.

PMID:
19025584
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Type II restriction endonuclease R.Hpy188I belongs to the GIY-YIG nuclease superfamily, but exhibits an unusual active site.

Kaminska KH, Kawai M, Boniecki M, Kobayashi I, Bujnicki JM.

BMC Struct Biol. 2008 Nov 14;8:48. doi: 10.1186/1472-6807-8-48.

PMID:
19014591
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

MODOMICS: a database of RNA modification pathways. 2008 update.

Czerwoniec A, Dunin-Horkawicz S, Purta E, Kaminska KH, Kasprzak JM, Bujnicki JM, Grosjean H, Rother K.

Nucleic Acids Res. 2009 Jan;37(Database issue):D118-21. doi: 10.1093/nar/gkn710. Epub 2008 Oct 14.

PMID:
18854352
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

YbeA is the m3Psi methyltransferase RlmH that targets nucleotide 1915 in 23S rRNA.

Purta E, Kaminska KH, Kasprzak JM, Bujnicki JM, Douthwaite S.

RNA. 2008 Oct;14(10):2234-44. doi: 10.1261/rna.1198108. Epub 2008 Aug 28.

PMID:
18755835
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

The YqfN protein of Bacillus subtilis is the tRNA: m1A22 methyltransferase (TrmK).

Roovers M, Kaminska KH, Tkaczuk KL, Gigot D, Droogmans L, Bujnicki JM.

Nucleic Acids Res. 2008 Jun;36(10):3252-62. doi: 10.1093/nar/gkn169. Epub 2008 Apr 17.

PMID:
18420655
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Bacteriophage Mu Mom protein responsible for DNA modification is a new member of the acyltransferase superfamily.

Kaminska KH, Bujnicki JM.

Cell Cycle. 2008 Jan 1;7(1):120-1. Epub 2007 Oct 11. No abstract available.

PMID:
18204304
[PubMed - indexed for MEDLINE]
Free Article
17.

Sequence-structure-function analysis of the bifunctional enzyme MnmC that catalyses the last two steps in the biosynthesis of hypermodified nucleoside mnm5s2U in tRNA.

Roovers M, Oudjama Y, Kaminska KH, Purta E, Caillet J, Droogmans L, Bujnicki JM.

Proteins. 2008 Jun;71(4):2076-85. doi: 10.1002/prot.21918.

PMID:
18186482
[PubMed - indexed for MEDLINE]
18.

Structural bioinformatics analysis of enzymes involved in the biosynthesis pathway of the hypermodified nucleoside ms(2)io(6)A37 in tRNA.

Kaminska KH, Baraniak U, Boniecki M, Nowaczyk K, Czerwoniec A, Bujnicki JM.

Proteins. 2008 Jan 1;70(1):1-18.

PMID:
17910062
[PubMed - indexed for MEDLINE]

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