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Osteoblast-released Matrix Vesicles, Regulation of Activity and Composition by Sulfated and Non-sulfated Glycosaminoglycans.

Schmidt JR, Kliemt S, Preissler C, Moeller S, von Bergen M, Hempel U, Kalkhof S.

Mol Cell Proteomics. 2016 Feb;15(2):558-72. doi: 10.1074/mcp.M115.049718. Epub 2015 Nov 23.


Protein structure prediction guided by crosslinking restraints--A systematic evaluation of the impact of the crosslinking spacer length.

Hofmann T, Fischer AW, Meiler J, Kalkhof S.

Methods. 2015 Nov 1;89:79-90. doi: 10.1016/j.ymeth.2015.05.014. Epub 2015 May 15.


Stable isotope labeling by amino acids in cell culture based proteomics reveals differences in protein abundances between spiral and coccoid forms of the gastric pathogen Helicobacter pylori.

Müller SA, Pernitzsch SR, Haange SB, Uetz P, von Bergen M, Sharma CM, Kalkhof S.

J Proteomics. 2015 Aug 3;126:34-45. doi: 10.1016/j.jprot.2015.05.011. Epub 2015 May 12.


A cleavable cytolysin-neuropeptide Y bioconjugate enables specific drug delivery and demonstrates intracellular mode of action.

Ahrens VM, Kostelnik KB, Rennert R, Böhme D, Kalkhof S, Kosel D, Weber L, von Bergen M, Beck-Sickinger AG.

J Control Release. 2015 Jul 10;209:170-8. doi: 10.1016/j.jconrel.2015.04.037. Epub 2015 Apr 30.


Structural analysis of the interleukin-8/glycosaminoglycan interactions by amide hydrogen/deuterium exchange mass spectrometry.

Hofmann T, Samsonov SA, Pichert A, Lemmnitzer K, Schiller J, Huster D, Pisabarro MT, von Bergen M, Kalkhof S.

Methods. 2015 Nov 1;89:45-53. doi: 10.1016/j.ymeth.2015.02.011. Epub 2015 Feb 26.


Pathway and time-resolved benzo[a]pyrene toxicity on Hepa1c1c7 cells at toxic and subtoxic exposure.

Kalkhof S, Dautel F, Loguercio S, Baumann S, Trump S, Jungnickel H, Otto W, Rudzok S, Potratz S, Luch A, Lehmann I, Beyer A, von Bergen M.

J Proteome Res. 2015 Jan 2;14(1):164-82. doi: 10.1021/pr500957t. Epub 2014 Nov 17.


Proteomics and metabolomics for in situ monitoring of wound healing.

Kalkhof S, Förster Y, Schmidt J, Schulz MC, Baumann S, Weißflog A, Gao W, Hempel U, Eckelt U, Rammelt S, von Bergen M.

Biomed Res Int. 2014;2014:934848. doi: 10.1155/2014/934848. Epub 2014 Aug 4.


Species determination of Culicoides biting midges via peptide profiling using matrix-assisted laser desorption ionization mass spectrometry.

Uhlmann KR, Gibb S, Kalkhof S, Arroyo-Abad U, Schulz C, Hoffmann B, Stubbins F, Carpenter S, Beer M, von Bergen M, Feltens R.

Parasit Vectors. 2014 Aug 24;7:392. doi: 10.1186/1756-3305-7-392.


Subtoxic and toxic concentrations of benzene and toluene induce Nrf2-mediated antioxidative stress response and affect the central carbon metabolism in lung epithelial cells A549.

Murugesan K, Baumann S, Wissenbach DK, Kliemt S, Kalkhof S, Otto W, Mögel I, Kohajda T, von Bergen M, Tomm JM.

Proteomics. 2013 Nov;13(21):3211-21. doi: 10.1002/pmic.201300126. Epub 2013 Oct 16.


Analysis of the STAT3 interactome using in-situ biotinylation and SILAC.

Blumert C, Kalkhof S, Brocke-Heidrich K, Kohajda T, von Bergen M, Horn F.

J Proteomics. 2013 Dec 6;94:370-86. doi: 10.1016/j.jprot.2013.08.021. Epub 2013 Sep 4.


Investigation of lysine side chain interactions of interleukin-8 with heparin and other glycosaminoglycans studied by a methylation-NMR approach.

Möbius K, Nordsieck K, Pichert A, Samsonov SA, Thomas L, Schiller J, Kalkhof S, Teresa Pisabarro M, Beck-Sickinger AG, Huster D.

Glycobiology. 2013 Nov;23(11):1260-9. doi: 10.1093/glycob/cwt062. Epub 2013 Aug 27.


Identification of new protein coding sequences and signal peptidase cleavage sites of Helicobacter pylori strain 26695 by proteogenomics.

Müller SA, Findeiß S, Pernitzsch SR, Wissenbach DK, Stadler PF, Hofacker IL, von Bergen M, Kalkhof S.

J Proteomics. 2013 Jun 28;86:27-42. doi: 10.1016/j.jprot.2013.04.036. Epub 2013 May 9.


Sulfated hyaluronan containing collagen matrices enhance cell-matrix-interaction, endocytosis, and osteogenic differentiation of human mesenchymal stromal cells.

Kliemt S, Lange C, Otto W, Hintze V, Möller S, von Bergen M, Hempel U, Kalkhof S.

J Proteome Res. 2013 Jan 4;12(1):378-89. doi: 10.1021/pr300640h. Epub 2012 Dec 7.


Quantitative proteomics reveals altered expression of extracellular matrix related proteins of human primary dermal fibroblasts in response to sulfated hyaluronan and collagen applied as artificial extracellular matrix.

Müller SA, van der Smissen A, von Feilitzsch M, Anderegg U, Kalkhof S, von Bergen M.

J Mater Sci Mater Med. 2012 Dec;23(12):3053-65. doi: 10.1007/s10856-012-4760-x. Epub 2012 Sep 19.


Quantitative proteomics reveals novel functions of osteoclast-associated receptor in STAT signaling and cell adhesion in human endothelial cells.

Goettsch C, Kliemt S, Sinningen K, von Bergen M, Hofbauer LC, Kalkhof S.

J Mol Cell Cardiol. 2012 Dec;53(6):829-37. doi: 10.1016/j.yjmcc.2012.09.003. Epub 2012 Sep 15.


Nonconserved Ca(2+)/calmodulin binding sites in Munc13s differentially control synaptic short-term plasticity.

Lipstein N, Schaks S, Dimova K, Kalkhof S, Ihling C, Kölbel K, Ashery U, Rhee J, Brose N, Sinz A, Jahn O.

Mol Cell Biol. 2012 Nov;32(22):4628-41. doi: 10.1128/MCB.00933-12. Epub 2012 Sep 10.


The effect of the degree of sulfation of glycosaminoglycans on osteoclast function and signaling pathways.

Salbach J, Kliemt S, Rauner M, Rachner TD, Goettsch C, Kalkhof S, von Bergen M, Möller S, Schnabelrauch M, Hintze V, Scharnweber D, Hofbauer LC.

Biomaterials. 2012 Nov;33(33):8418-29. doi: 10.1016/j.biomaterials.2012.08.028. Epub 2012 Sep 4.


Artifacts in amine analysis from anodic oxidation of organic solvents upon electrospray ionization for mass spectrometry.

Abburi R, Kalkhof S, Oehme R, Kiontke A, Birkemeyer C.

Eur J Mass Spectrom (Chichester, Eng). 2012;18(3):301-12. doi: 10.1255/ejms.1187.


Concentration-response concept in ecotoxicoproteomics: effects of different phenanthrene concentrations to the zebrafish (Danio rerio) embryo proteome.

Gündel U, Kalkhof S, Zitzkat D, von Bergen M, Altenburger R, Küster E.

Ecotoxicol Environ Saf. 2012 Feb;76(2):11-22. doi: 10.1016/j.ecoenv.2011.10.010. Epub 2011 Nov 5.


RNAcode: robust discrimination of coding and noncoding regions in comparative sequence data.

Washietl S, Findeiss S, Müller SA, Kalkhof S, von Bergen M, Hofacker IL, Stadler PF, Goldman N.

RNA. 2011 Apr;17(4):578-94. doi: 10.1261/rna.2536111. Epub 2011 Feb 28.

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