Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 43

1.

Large scale analysis of signal reachability.

Todor A, Gabr H, Dobra A, Kahveci T.

Bioinformatics. 2014 Jun 15;30(12):i96-i104. doi: 10.1093/bioinformatics/btu262.

PMID:
24932011
[PubMed - in process]
Free PMC Article
2.

A scalable method for discovering significant subnetworks.

Hasan MM, Kavurucu Y, Kahveci T.

BMC Syst Biol. 2013;7 Suppl 4:S3. doi: 10.1186/1752-0509-7-S4-S3. Epub 2013 Oct 23.

PMID:
24565174
[PubMed - in process]
Free PMC Article
3.

Characterizing the topology of probabilistic biological networks.

Todor A, Dobra A, Kahveci T.

IEEE/ACM Trans Comput Biol Bioinform. 2013 Jul-Aug;10(4):970-83. doi: 10.1109/TCBB.2013.108.

PMID:
24334390
[PubMed - in process]
4.

Characterizing Topology of Probabilistic Biological Networks.

Todor A, Dobra A, Kahveci T.

IEEE/ACM Trans Comput Biol Bioinform. 2013 Sep 6. [Epub ahead of print]

PMID:
24018700
[PubMed - as supplied by publisher]
5.

Metabolomic analysis reveals extended metabolic consequences of marginal vitamin B-6 deficiency in healthy human subjects.

Gregory JF 3rd, Park Y, Lamers Y, Bandyopadhyay N, Chi YY, Lee K, Kim S, da Silva V, Hove N, Ranka S, Kahveci T, Muller KE, Stevens RD, Newgard CB, Stacpoole PW, Jones DP.

PLoS One. 2013 Jun 11;8(6):e63544. doi: 10.1371/journal.pone.0063544. Print 2013.

PMID:
23776431
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Probabilistic biological network alignment.

Todor A, Dobra A, Kahveci T.

IEEE/ACM Trans Comput Biol Bioinform. 2013 Jan-Feb;10(1):109-21. doi: 10.1109/TCBB.2012.142.

PMID:
23702548
[PubMed - indexed for MEDLINE]
7.

From uncertain protein interaction networks to signaling pathways through intensive color coding.

Gabr H, Dobra A, Kahveci T.

Pac Symp Biocomput. 2013:111-22.

PMID:
23424117
[PubMed - indexed for MEDLINE]
Free Article
8.

Large-scale signaling network reconstruction.

Hashemikhabir S, Ayaz ES, Kavurucu Y, Can T, Kahveci T.

IEEE/ACM Trans Comput Biol Bioinform. 2012 Nov-Dec;9(6):1696-708. doi: 10.1109/TCBB.2012.128.

PMID:
23221085
[PubMed - indexed for MEDLINE]
9.

Stability analysis of phylogenetic trees.

Sheikh SI, Kahveci T, Ranka S, Gordon Burleigh J.

Bioinformatics. 2013 Jan 15;29(2):166-74. doi: 10.1093/bioinformatics/bts657. Epub 2012 Nov 18.

PMID:
23162082
[PubMed - indexed for MEDLINE]
Free Article
10.

A scalable method for identifying frequent subtrees in sets of large phylogenetic trees.

Ramu A, Kahveci T, Burleigh JG.

BMC Bioinformatics. 2012 Oct 3;13:256. doi: 10.1186/1471-2105-13-256.

PMID:
23033843
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

HIDEN: Hierarchical decomposition of regulatory networks.

Gülsoy G, Bandhyopadhyay N, Kahveci T.

BMC Bioinformatics. 2012 Sep 28;13:250. doi: 10.1186/1471-2105-13-250.

PMID:
23016513
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Topac: alignment of gene regulatory networks using topology-aware coloring.

Gülsoy G, Gandhi B, Kahveci T.

J Bioinform Comput Biol. 2012 Feb;10(1):1240001. doi: 10.1142/S021972001240001X.

PMID:
22809302
[PubMed - indexed for MEDLINE]
13.

Metabolic network alignment in large scale by network compression.

Ay F, Dang M, Kahveci T.

BMC Bioinformatics. 2012 Mar 21;13 Suppl 3:S2. doi: 10.1186/1471-2105-13-S3-S2.

PMID:
22536900
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

CMRF: analyzing differential gene regulation in two group perturbation experiments.

Bandyopadhyay N, Somaiya M, Ranka S, Kahveci T.

BMC Genomics. 2012 Apr 12;13 Suppl 2:S2. doi: 10.1186/1471-2164-13-S2-S2.

PMID:
22537297
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks.

Marbach D, Roy S, Ay F, Meyer PE, Candeias R, Kahveci T, Bristow CA, Kellis M.

Genome Res. 2012 Jul;22(7):1334-49. doi: 10.1101/gr.127191.111. Epub 2012 Mar 28.

PMID:
22456606
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

SSLPred: predicting synthetic sickness lethality.

Bandyopadhyay N, Ranka S, Kahveci T.

Pac Symp Biocomput. 2012:7-18.

PMID:
22174258
[PubMed - indexed for MEDLINE]
Free Article
17.

RINQ: Reference-based Indexing for Network Queries.

Gülsoy G, Kahveci T.

Bioinformatics. 2011 Jul 1;27(13):i149-58. doi: 10.1093/bioinformatics/btr203.

PMID:
21685064
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

TRIAL: a tool for finding distant structural similarities.

Venkateswaran JG, Song B, Kahveci T, Jermaine C.

IEEE/ACM Trans Comput Biol Bioinform. 2011 May-Jun;8(3):819-31. doi: 10.1109/TCBB.2009.28.

PMID:
21393655
[PubMed - indexed for MEDLINE]
19.

SubMAP: aligning metabolic pathways with subnetwork mappings.

Ay F, Kellis M, Kahveci T.

J Comput Biol. 2011 Mar;18(3):219-35. doi: 10.1089/cmb.2010.0280.

PMID:
21385030
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

A role for the universal Kae1/Qri7/YgjD (COG0533) family in tRNA modification.

El Yacoubi B, Hatin I, Deutsch C, Kahveci T, Rousset JP, Iwata-Reuyl D, Murzin AG, de Crécy-Lagard V.

EMBO J. 2011 Mar 2;30(5):882-93. doi: 10.1038/emboj.2010.363. Epub 2011 Feb 1.

PMID:
21285948
[PubMed - indexed for MEDLINE]
Free PMC Article

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Loading ...
Write to the Help Desk