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Results: 1 to 20 of 38

1.

A Comprehensive, Automatically Updated Fungal ITS Sequence Dataset for Reference-Based Chimera Control in Environmental Sequencing Efforts.

Nilsson RH, Tedersoo L, Ryberg M, Kristiansson E, Hartmann M, Unterseher M, Porter TM, Bengtsson-Palme J, Walker DM, de Sousa F, Gamper HA, Larsson E, Larsson KH, Kõljalg U, Edgar RC, Abarenkov K.

Microbes Environ. 2015;30(2):145-50. doi: 10.1264/jsme2.ME14121. Epub 2015 Mar 19.

2.

Temporal patterns of orchid mycorrhizal fungi in meadows and forests as revealed by 454 pyrosequencing.

Oja J, Kohout P, Tedersoo L, Kull T, Kõljalg U.

New Phytol. 2015 Mar;205(4):1608-18. doi: 10.1111/nph.13223. Epub 2014 Dec 24.

PMID:
25546739
3.

Fungal biogeography. Global diversity and geography of soil fungi.

Tedersoo L, Bahram M, Põlme S, Kõljalg U, Yorou NS, Wijesundera R, Villarreal Ruiz L, Vasco-Palacios AM, Thu PQ, Suija A, Smith ME, Sharp C, Saluveer E, Saitta A, Rosas M, Riit T, Ratkowsky D, Pritsch K, Põldmaa K, Piepenbring M, Phosri C, Peterson M, Parts K, Pärtel K, Otsing E, Nouhra E, Njouonkou AL, Nilsson RH, Morgado LN, Mayor J, May TW, Majuakim L, Lodge DJ, Lee SS, Larsson KH, Kohout P, Hosaka K, Hiiesalu I, Henkel TW, Harend H, Guo LD, Greslebin A, Grelet G, Geml J, Gates G, Dunstan W, Dunk C, Drenkhan R, Dearnaley J, De Kesel A, Dang T, Chen X, Buegger F, Brearley FQ, Bonito G, Anslan S, Abell S, Abarenkov K.

Science. 2014 Nov 28;346(6213):1256688. doi: 10.1126/science.1256688.

PMID:
25430773
4.

Global biogeography of Alnus-associated Frankia actinobacteria.

Põlme S, Bahram M, Kõljalg U, Tedersoo L.

New Phytol. 2014 Dec;204(4):979-88. doi: 10.1111/nph.12962. Epub 2014 Aug 13.

PMID:
25124146
5.

Global biogeography of the ectomycorrhizal /sebacina lineage (Fungi, Sebacinales) as revealed from comparative phylogenetic analyses.

Tedersoo L, Bahram M, Ryberg M, Otsing E, Kõljalg U, Abarenkov K.

Mol Ecol. 2014 Aug;23(16):4168-83. doi: 10.1111/mec.12849. Epub 2014 Jul 23.

PMID:
24981058
6.

Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi.

Schoch CL, Robbertse B, Robert V, Vu D, Cardinali G, Irinyi L, Meyer W, Nilsson RH, Hughes K, Miller AN, Kirk PM, Abarenkov K, Aime MC, Ariyawansa HA, Bidartondo M, Boekhout T, Buyck B, Cai Q, Chen J, Crespo A, Crous PW, Damm U, De Beer ZW, Dentinger BT, Divakar PK, Dueñas M, Feau N, Fliegerova K, García MA, Ge ZW, Griffith GW, Groenewald JZ, Groenewald M, Grube M, Gryzenhout M, Gueidan C, Guo L, Hambleton S, Hamelin R, Hansen K, Hofstetter V, Hong SB, Houbraken J, Hyde KD, Inderbitzin P, Johnston PR, Karunarathna SC, Kõljalg U, Kovács GM, Kraichak E, Krizsan K, Kurtzman CP, Larsson KH, Leavitt S, Letcher PM, Liimatainen K, Liu JK, Lodge DJ, Luangsa-ard JJ, Lumbsch HT, Maharachchikumbura SS, Manamgoda D, Martín MP, Minnis AM, Moncalvo JM, Mulè G, Nakasone KK, Niskanen T, Olariaga I, Papp T, Petkovits T, Pino-Bodas R, Powell MJ, Raja HA, Redecker D, Sarmiento-Ramirez JM, Seifert KA, Shrestha B, Stenroos S, Stielow B, Suh SO, Tanaka K, Tedersoo L, Telleria MT, Udayanga D, Untereiner WA, Diéguez Uribeondo J, Subbarao KV, Vágvölgyi C, Visagie C, Voigt K, Walker DM, Weir BS, Weiß M, Wijayawardene NN, Wingfield MJ, Xu JP, Yang ZL, Zhang N, Zhuang WY, Federhen S.

Database (Oxford). 2014 Jun 30;2014. pii: bau061. doi: 10.1093/database/bau061. Print 2014.

7.

Towards a unified paradigm for sequence-based identification of fungi.

Kõljalg U, Nilsson RH, Abarenkov K, Tedersoo L, Taylor AF, Bahram M, Bates ST, Bruns TD, Bengtsson-Palme J, Callaghan TM, Douglas B, Drenkhan T, Eberhardt U, Dueñas M, Grebenc T, Griffith GW, Hartmann M, Kirk PM, Kohout P, Larsson E, Lindahl BD, Lücking R, Martín MP, Matheny PB, Nguyen NH, Niskanen T, Oja J, Peay KG, Peintner U, Peterson M, Põldmaa K, Saag L, Saar I, Schüßler A, Scott JA, Senés C, Smith ME, Suija A, Taylor DL, Telleria MT, Weiss M, Larsson KH.

Mol Ecol. 2013 Nov;22(21):5271-7. doi: 10.1111/mec.12481. Epub 2013 Sep 24.

PMID:
24112409
8.

Fungal community analysis by high-throughput sequencing of amplified markers--a user's guide.

Lindahl BD, Nilsson RH, Tedersoo L, Abarenkov K, Carlsen T, Kjøller R, Kõljalg U, Pennanen T, Rosendahl S, Stenlid J, Kauserud H.

New Phytol. 2013 Jul;199(1):288-99. doi: 10.1111/nph.12243. Epub 2013 Mar 28. Review.

9.

Biogeography of ectomycorrhizal fungi associated with alders (Alnus spp.) in relation to biotic and abiotic variables at the global scale.

Põlme S, Bahram M, Yamanaka T, Nara K, Dai YC, Grebenc T, Kraigher H, Toivonen M, Wang PH, Matsuda Y, Naadel T, Kennedy PG, Kõljalg U, Tedersoo L.

New Phytol. 2013 Jun;198(4):1239-49. doi: 10.1111/nph.12170. Epub 2013 Feb 20.

PMID:
23421531
10.

Enzymatic activities and stable isotope patterns of ectomycorrhizal fungi in relation to phylogeny and exploration types in an afrotropical rain forest.

Tedersoo L, Naadel T, Bahram M, Pritsch K, Buegger F, Leal M, Kõljalg U, Põldmaa K.

New Phytol. 2012 Sep;195(4):832-43. doi: 10.1111/j.1469-8137.2012.04217.x. Epub 2012 Jul 3.

PMID:
22758212
11.

The amsterdam declaration on fungal nomenclature.

Hawksworth DL, Crous PW, Redhead SA, Reynolds DR, Samson RA, Seifert KA, Taylor JW, Wingfield MJ, Abaci O, Aime C, Asan A, Bai FY, de Beer ZW, Begerow D, Berikten D, Boekhout T, Buchanan PK, Burgess T, Buzina W, Cai L, Cannon PF, Crane JL, Damm U, Daniel HM, van Diepeningen AD, Druzhinina I, Dyer PS, Eberhardt U, Fell JW, Frisvad JC, Geiser DM, Geml J, Glienke C, Gräfenhan T, Groenewald JZ, Groenewald M, de Gruyter J, Guého-Kellermann E, Guo LD, Hibbett DS, Hong SB, de Hoog GS, Houbraken J, Huhndorf SM, Hyde KD, Ismail A, Johnston PR, Kadaifciler DG, Kirk PM, Kõljalg U, Kurtzman CP, Lagneau PE, Lévesque CA, Liu X, Lombard L, Meyer W, Miller A, Minter DW, Najafzadeh MJ, Norvell L, Ozerskaya SM, Oziç R, Pennycook SR, Peterson SW, Pettersson OV, Quaedvlieg W, Robert VA, Ruibal C, Schnürer J, Schroers HJ, Shivas R, Slippers B, Spierenburg H, Takashima M, Taşkın E, Thines M, Thrane U, Uztan AH, van Raak M, Varga J, Vasco A, Verkley G, Videira SI, de Vries RP, Weir BS, Yilmaz N, Yurkov A, Zhang N.

IMA Fungus. 2011 Jun;2(1):105-12. doi: 10.5598/imafungus.2011.02.01.14. Epub 2011 Jun 7.

12.

Ectomycorrhizal fungi of exotic pine plantations in relation to native host trees in Iran: evidence of host range expansion by local symbionts to distantly related host taxa.

Bahram M, Kõljalg U, Kohout P, Mirshahvaladi S, Tedersoo L.

Mycorrhiza. 2013 Jan;23(1):11-9. doi: 10.1007/s00572-012-0445-z. Epub 2012 May 17.

PMID:
22592855
13.

Towards global patterns in the diversity and community structure of ectomycorrhizal fungi.

Tedersoo L, Bahram M, Toots M, Diédhiou AG, Henkel TW, Kjøller R, Morris MH, Nara K, Nouhra E, Peay KG, Põlme S, Ryberg M, Smith ME, Kõljalg U.

Mol Ecol. 2012 Sep;21(17):4160-70. doi: 10.1111/j.1365-294X.2012.05602.x. Epub 2012 May 9.

PMID:
22568722
14.

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi.

Schoch CL, Seifert KA, Huhndorf S, Robert V, Spouge JL, Levesque CA, Chen W; Fungal Barcoding Consortium; Fungal Barcoding Consortium Author List.

Proc Natl Acad Sci U S A. 2012 Apr 17;109(16):6241-6. doi: 10.1073/pnas.1117018109. Epub 2012 Mar 27.

15.

Regional and local patterns of ectomycorrhizal fungal diversity and community structure along an altitudinal gradient in the Hyrcanian forests of northern Iran.

Bahram M, Põlme S, Kõljalg U, Zarre S, Tedersoo L.

New Phytol. 2012 Jan;193(2):465-73. doi: 10.1111/j.1469-8137.2011.03927.x. Epub 2011 Oct 11.

PMID:
21988714
16.

Tidying up international nucleotide sequence databases: ecological, geographical and sequence quality annotation of its sequences of mycorrhizal fungi.

Tedersoo L, Abarenkov K, Nilsson RH, Schüssler A, Grelet GA, Kohout P, Oja J, Bonito GM, Veldre V, Jairus T, Ryberg M, Larsson KH, Kõljalg U.

PLoS One. 2011;6(9):e24940. doi: 10.1371/journal.pone.0024940. Epub 2011 Sep 15.

17.

Spatial structure and the effects of host and soil environments on communities of ectomycorrhizal fungi in wooded savannas and rain forests of Continental Africa and Madagascar.

Tedersoo L, Bahram M, Jairus T, Bechem E, Chinoya S, Mpumba R, Leal M, Randrianjohany E, Razafimandimbison S, Sadam A, Naadel T, Kõljalg U.

Mol Ecol. 2011 Jul;20(14):3071-80. doi: 10.1111/j.1365-294X.2011.05145.x. Epub 2011 Jun 7.

PMID:
21645161
18.
19.

Towards standardization of the description and publication of next-generation sequencing datasets of fungal communities.

Henrik Nilsson R, Tedersoo L, Lindahl BD, Kjøller R, Carlsen T, Quince C, Abarenkov K, Pennanen T, Stenlid J, Bruns T, Larsson KH, Kõljalg U, Kauserud H.

New Phytol. 2011 Jul;191(2):314-8. doi: 10.1111/j.1469-8137.2011.03755.x. Epub 2011 May 9. No abstract available.

PMID:
21557749
20.

A single European aspen (Populus tremula) tree individual may potentially harbour dozens of Cenococcum geophilum ITS genotypes and hundreds of species of ectomycorrhizal fungi.

Bahram M, Põlme S, Kõljalg U, Tedersoo L.

FEMS Microbiol Ecol. 2011 Feb;75(2):313-20. doi: 10.1111/j.1574-6941.2010.01000.x. Epub 2010 Nov 26.

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