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Items: 19

1.

The cellular microscopy phenotype ontology.

Jupp S, Malone J, Burdett T, Heriche JK, Williams E, Ellenberg J, Parkinson H, Rustici G.

J Biomed Semantics. 2016 May 18;7:28. doi: 10.1186/s13326-016-0074-0. eCollection 2016.

2.

Developing a web-based SKOS editor.

Conway M, Khojoyan A, Fana F, Scuba W, Castine M, Mowery D, Chapman W, Jupp S.

J Biomed Semantics. 2016 Apr 4;7:5. doi: 10.1186/s13326-015-0043-z. eCollection 2016.

3.

Webulous and the Webulous Google Add-On--a web service and application for ontology building from templates.

Jupp S, Burdett T, Welter D, Sarntivijai S, Parkinson H, Malone J.

J Biomed Semantics. 2016 Apr 1;7:17. doi: 10.1186/s13326-016-0055-3. eCollection 2016.

4.

Linking rare and common disease: mapping clinical disease-phenotypes to ontologies in therapeutic target validation.

Sarntivijai S, Vasant D, Jupp S, Saunders G, Bento AP, Gonzalez D, Betts J, Hasan S, Koscielny G, Dunham I, Parkinson H, Malone J.

J Biomed Semantics. 2016 Mar 23;7:8. doi: 10.1186/s13326-016-0051-7. eCollection 2016.

5.

Ten Simple Rules for Selecting a Bio-ontology.

Malone J, Stevens R, Jupp S, Hancocks T, Parkinson H, Brooksbank C.

PLoS Comput Biol. 2016 Feb 11;12(2):e1004743. doi: 10.1371/journal.pcbi.1004743. eCollection 2016 Feb. No abstract available.

6.

Expression Atlas update--an integrated database of gene and protein expression in humans, animals and plants.

Petryszak R, Keays M, Tang YA, Fonseca NA, Barrera E, Burdett T, Füllgrabe A, Fuentes AM, Jupp S, Koskinen S, Mannion O, Huerta L, Megy K, Snow C, Williams E, Barzine M, Hastings E, Weisser H, Wright J, Jaiswal P, Huber W, Choudhary J, Parkinson HE, Brazma A.

Nucleic Acids Res. 2016 Jan 4;44(D1):D746-52. doi: 10.1093/nar/gkv1045. Epub 2015 Oct 19.

7.

The EBI RDF platform: linked open data for the life sciences.

Jupp S, Malone J, Bolleman J, Brandizi M, Davies M, Garcia L, Gaulton A, Gehant S, Laibe C, Redaschi N, Wimalaratne SM, Martin M, Le Novère N, Parkinson H, Birney E, Jenkinson AM.

Bioinformatics. 2014 May 1;30(9):1338-9. doi: 10.1093/bioinformatics/btt765. Epub 2014 Jan 11.

8.

Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments.

Petryszak R, Burdett T, Fiorelli B, Fonseca NA, Gonzalez-Porta M, Hastings E, Huber W, Jupp S, Keays M, Kryvych N, McMurry J, Marioni JC, Malone J, Megy K, Rustici G, Tang AY, Taubert J, Williams E, Mannion O, Parkinson HE, Brazma A.

Nucleic Acids Res. 2014 Jan;42(Database issue):D926-32. doi: 10.1093/nar/gkt1270. Epub 2013 Dec 4.

9.

The KUPNetViz: a biological network viewer for multiple -omics datasets in kidney diseases.

Moulos P, Klein J, Jupp S, Stevens R, Bascands JL, Schanstra JP.

BMC Bioinformatics. 2013 Jul 24;14:235. doi: 10.1186/1471-2105-14-235.

10.

Logical Gene Ontology Annotations (GOAL): exploring gene ontology annotations with OWL.

Jupp S, Stevens R, Hoehndorf R.

J Biomed Semantics. 2012 Apr 24;3 Suppl 1:S3. doi: 10.1186/2041-1480-3-S1-S3.

11.

Populous: a tool for building OWL ontologies from templates.

Jupp S, Horridge M, Iannone L, Klein J, Owen S, Schanstra J, Wolstencroft K, Stevens R.

BMC Bioinformatics. 2012 Jan 25;13 Suppl 1:S5. doi: 10.1186/1471-2105-13-S1-S5.

12.

The KUPKB: a novel Web application to access multiomics data on kidney disease.

Klein J, Jupp S, Moulos P, Fernandez M, Buffin-Meyer B, Casemayou A, Chaaya R, Charonis A, Bascands JL, Stevens R, Schanstra JP.

FASEB J. 2012 May;26(5):2145-53. doi: 10.1096/fj.11-194381. Epub 2012 Feb 17.

13.

Using semantic web technologies to manage complexity and change in biomedical data.

Stevens R, Jupp S, Klein J, Schanstra J.

Conf Proc IEEE Eng Med Biol Soc. 2011;2011:3708-11. doi: 10.1109/IEMBS.2011.6090629.

PMID:
22255145
14.

Developing a kidney and urinary pathway knowledge base.

Jupp S, Klein J, Schanstra J, Stevens R.

J Biomed Semantics. 2011 May 17;2 Suppl 2:S7. doi: 10.1186/2041-1480-2-S2-S7.

15.

Global forum for health research, forum 2009: innovating for the health of all.

Jupp S.

MEDICC Rev. 2010 Jul;12(3):5-7. No abstract available.

16.

Calling young researchers.

Samarasekera U, Jupp S.

Lancet. 2010 Mar 6;375(9717):788-9. doi: 10.1016/S0140-6736(10)60318-2. No abstract available. Erratum in: Lancet. 2010 Apr 24;375(9724):1436.

PMID:
20206760
17.

A user-centred evaluation framework for the Sealife semantic web browsers.

Oliver H, Diallo G, de Quincey E, Alexopoulou D, Habermann B, Kostkova P, Schroeder M, Jupp S, Khelif K, Stevens R, Jawaheer G, Madle G.

BMC Bioinformatics. 2009 Oct 1;10 Suppl 10:S14. doi: 10.1186/1471-2105-10-S10-S14.

18.

Issues in learning an ontology from text.

Brewster C, Jupp S, Luciano J, Shotton D, Stevens RD, Zhang Z.

BMC Bioinformatics. 2009 May 6;10 Suppl 5:S1. doi: 10.1186/1471-2105-10-S5-S1.

19.

Defective particle assembly in wild type P2 bacteriophage and its correction by the lg mutation.

Bertani G, Ljungquist E, Jagusztyn-Krynicka K, Jupp S.

J Gen Virol. 1978 Feb;38(2):251-61.

PMID:
627873
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