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Results: 1 to 20 of 29

1.

Stage 0 sporulation gene A as a molecular marker to study diversity of endospore-forming Firmicutes.

Wunderlin T, Junier T, Roussel-Delif L, Jeanneret N, Junier P.

Environ Microbiol Rep. 2013 Dec;5(6):911-24. doi: 10.1111/1758-2229.12094. Epub 2013 Sep 8.

PMID:
24249300
[PubMed - indexed for MEDLINE]
2.

Quantification of endospore-forming firmicutes by quantitative PCR with the functional gene spo0A.

Bueche M, Wunderlin T, Roussel-Delif L, Junier T, Sauvain L, Jeanneret N, Junier P.

Appl Environ Microbiol. 2013 Sep;79(17):5302-12. doi: 10.1128/AEM.01376-13. Epub 2013 Jun 28.

PMID:
23811505
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Contribution of genetic background, traditional risk factors, and HIV-related factors to coronary artery disease events in HIV-positive persons.

Rotger M, Glass TR, Junier T, Lundgren J, Neaton JD, Poloni ES, van 't Wout AB, Lubomirov R, Colombo S, Martinez R, Rauch A, Günthard HF, Neuhaus J, Wentworth D, van Manen D, Gras LA, Schuitemaker H, Albini L, Torti C, Jacobson LP, Li X, Kingsley LA, Carli F, Guaraldi G, Ford ES, Sereti I, Hadigan C, Martinez E, Arnedo M, Egaña-Gorroño L, Gatell JM, Law M, Bendall C, Petoumenos K, Rockstroh J, Wasmuth JC, Kabamba K, Delforge M, De Wit S, Berger F, Mauss S, de Paz Sierra M, Losso M, Belloso WH, Leyes M, Campins A, Mondi A, De Luca A, Bernardino I, Barriuso-Iglesias M, Torrecilla-Rodriguez A, Gonzalez-Garcia J, Arribas JR, Fanti I, Gel S, Puig J, Negredo E, Gutierrez M, Domingo P, Fischer J, Fätkenheuer G, Alonso-Villaverde C, Macken A, Woo J, McGinty T, Mallon P, Mangili A, Skinner S, Wanke CA, Reiss P, Weber R, Bucher HC, Fellay J, Telenti A, Tarr PE; MAGNIFICENT Consortium; INSIGHT; Swiss HIV Cohort Study.

Clin Infect Dis. 2013 Jul;57(1):112-21. doi: 10.1093/cid/cit196. Epub 2013 Mar 26.

PMID:
23532479
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Impact of highly active antiretroviral therapy on the molecular epidemiology of newly diagnosed HIV infections.

Ambrosioni J, Junier T, Delhumeau C, Calmy A, Hirschel B, Zdobnov E, Kaiser L, Yerly S; Swiss HIV Cohort Study.

AIDS. 2012 Oct 23;26(16):2079-86. doi: 10.1097/QAD.0b013e32835805b6.

PMID:
23052354
[PubMed - indexed for MEDLINE]
5.

Purifying selection in mammalian mitochondrial protein-coding genes is highly effective and congruent with evolution of nuclear genes.

Popadin KY, Nikolaev SI, Junier T, Baranova M, Antonarakis SE.

Mol Biol Evol. 2013 Feb;30(2):347-55. doi: 10.1093/molbev/mss219. Epub 2012 Sep 14.

PMID:
22983951
[PubMed - indexed for MEDLINE]
Free Article
6.

Rhinovirus genome variation during chronic upper and lower respiratory tract infections.

Tapparel C, Cordey S, Junier T, Farinelli L, Van Belle S, Soccal PM, Aubert JD, Zdobnov E, Kaiser L.

PLoS One. 2011;6(6):e21163. doi: 10.1371/journal.pone.0021163. Epub 2011 Jun 21.

PMID:
21713005
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Rhinovirus genome evolution during experimental human infection.

Cordey S, Junier T, Gerlach D, Gobbini F, Farinelli L, Zdobnov EM, Winther B, Tapparel C, Kaiser L.

PLoS One. 2010 May 11;5(5):e10588. doi: 10.1371/journal.pone.0010588.

PMID:
20485673
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The genome of the Gram-positive metal- and sulfate-reducing bacterium Desulfotomaculum reducens strain MI-1.

Junier P, Junier T, Podell S, Sims DR, Detter JC, Lykidis A, Han CS, Wigginton NS, Gaasterland T, Bernier-Latmani R.

Environ Microbiol. 2010 Oct;12(10):2738-54. doi: 10.1111/j.1462-2920.2010.02242.x.

PMID:
20482743
[PubMed - indexed for MEDLINE]
9.

The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell.

Junier T, Zdobnov EM.

Bioinformatics. 2010 Jul 1;26(13):1669-70. doi: 10.1093/bioinformatics/btq243. Epub 2010 May 13.

PMID:
20472542
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Functional and evolutionary insights from the genomes of three parasitoid Nasonia species.

Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK; Nasonia Genome Working Group, Werren JH, Richards S, Desjardins CA, Niehuis O, Gadau J, Colbourne JK, Beukeboom LW, Desplan C, Elsik CG, Grimmelikhuijzen CJ, Kitts P, Lynch JA, Murphy T, Oliveira DC, Smith CD, van de Zande L, Worley KC, Zdobnov EM, Aerts M, Albert S, Anaya VH, Anzola JM, Barchuk AR, Behura SK, Bera AN, Berenbaum MR, Bertossa RC, Bitondi MM, Bordenstein SR, Bork P, Bornberg-Bauer E, Brunain M, Cazzamali G, Chaboub L, Chacko J, Chavez D, Childers CP, Choi JH, Clark ME, Claudianos C, Clinton RA, Cree AG, Cristino AS, Dang PM, Darby AC, de Graaf DC, Devreese B, Dinh HH, Edwards R, Elango N, Elhaik E, Ermolaeva O, Evans JD, Foret S, Fowler GR, Gerlach D, Gibson JD, Gilbert DG, Graur D, Gründer S, Hagen DE, Han Y, Hauser F, Hultmark D, Hunter HC 4th, Hurst GD, Jhangian SN, Jiang H, Johnson RM, Jones AK, Junier T, Kadowaki T, Kamping A, Kapustin Y, Kechavarzi B, Kim J, Kim J, Kiryutin B, Koevoets T, Kovar CL, Kriventseva EV, Kucharski R, Lee H, Lee SL, Lees K, Lewis LR, Loehlin DW, Logsdon JM Jr, Lopez JA, Lozado RJ, Maglott D, Maleszka R, Mayampurath A, Mazur DJ, McClure MA, Moore AD, Morgan MB, Muller J, Munoz-Torres MC, Muzny DM, Nazareth LV, Neupert S, Nguyen NB, Nunes FM, Oakeshott JG, Okwuonu GO, Pannebakker BA, Pejaver VR, Peng Z, Pratt SC, Predel R, Pu LL, Ranson H, Raychoudhury R, Rechtsteiner A, Reese JT, Reid JG, Riddle M, Robertson HM, Romero-Severson J, Rosenberg M, Sackton TB, Sattelle DB, Schlüns H, Schmitt T, Schneider M, Schüler A, Schurko AM, Shuker DM, Simões ZL, Sinha S, Smith Z, Solovyev V, Souvorov A, Springauf A, Stafflinger E, Stage DE, Stanke M, Tanaka Y, Telschow A, Trent C, Vattathil S, Verhulst EC, Viljakainen L, Wanner KW, Waterhouse RM, Whitfield JB, Wilkes TE, Williamson M, Willis JH, Wolschin F, Wyder S, Yamada T, Yi SV, Zecher CN, Zhang L, Gibbs RA.

Science. 2010 Jan 15;327(5963):343-8. doi: 10.1126/science.1178028. Erratum in: Science. 2010 Mar 26;327(5973):1577.

PMID:
20075255
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Phylogenetic and functional marker genes to study ammonia-oxidizing microorganisms (AOM) in the environment.

Junier P, Molina V, Dorador C, Hadas O, Kim OS, Junier T, Witzel JP, Imhoff JF.

Appl Microbiol Biotechnol. 2010 Jan;85(3):425-40. doi: 10.1007/s00253-009-2228-9. Review.

PMID:
19830422
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The impact of transmission clusters on primary drug resistance in newly diagnosed HIV-1 infection.

Yerly S, Junier T, Gayet-Ageron A, Amari EB, von Wyl V, Günthard HF, Hirschel B, Zdobnov E, Kaiser L; Swiss HIV Cohort Study.

AIDS. 2009 Jul 17;23(11):1415-23. doi: 10.1097/QAD.0b013e32832d40ad.

PMID:
19487906
[PubMed - indexed for MEDLINE]
13.

New respiratory enterovirus and recombinant rhinoviruses among circulating picornaviruses.

Tapparel C, Junier T, Gerlach D, Van-Belle S, Turin L, Cordey S, Mühlemann K, Regamey N, Aubert JD, Soccal PM, Eigenmann P, Zdobnov E, Kaiser L.

Emerg Infect Dis. 2009 May;15(5):719-26. doi: 10.3201/eid1505.081286.

PMID:
19402957
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The genome sequence of taurine cattle: a window to ruminant biology and evolution.

Bovine Genome Sequencing and Analysis Consortium, Elsik CG, Tellam RL, Worley KC, Gibbs RA, Muzny DM, Weinstock GM, Adelson DL, Eichler EE, Elnitski L, Guigó R, Hamernik DL, Kappes SM, Lewin HA, Lynn DJ, Nicholas FW, Reymond A, Rijnkels M, Skow LC, Zdobnov EM, Schook L, Womack J, Alioto T, Antonarakis SE, Astashyn A, Chapple CE, Chen HC, Chrast J, Câmara F, Ermolaeva O, Henrichsen CN, Hlavina W, Kapustin Y, Kiryutin B, Kitts P, Kokocinski F, Landrum M, Maglott D, Pruitt K, Sapojnikov V, Searle SM, Solovyev V, Souvorov A, Ucla C, Wyss C, Anzola JM, Gerlach D, Elhaik E, Graur D, Reese JT, Edgar RC, McEwan JC, Payne GM, Raison JM, Junier T, Kriventseva EV, Eyras E, Plass M, Donthu R, Larkin DM, Reecy J, Yang MQ, Chen L, Cheng Z, Chitko-McKown CG, Liu GE, Matukumalli LK, Song J, Zhu B, Bradley DG, Brinkman FS, Lau LP, Whiteside MD, Walker A, Wheeler TT, Casey T, German JB, Lemay DG, Maqbool NJ, Molenaar AJ, Seo S, Stothard P, Baldwin CL, Baxter R, Brinkmeyer-Langford CL, Brown WC, Childers CP, Connelley T, Ellis SA, Fritz K, Glass EJ, Herzig CT, Iivanainen A, Lahmers KK, Bennett AK, Dickens CM, Gilbert JG, Hagen DE, Salih H, Aerts J, Caetano AR, Dalrymple B, Garcia JF, Gill CA, Hiendleder SG, Memili E, Spurlock D, Williams JL, Alexander L, Brownstein MJ, Guan L, Holt RA, Jones SJ, Marra MA, Moore R, Moore SS, Roberts A, Taniguchi M, Waterman RC, Chacko J, Chandrabose MM, Cree A, Dao MD, Dinh HH, Gabisi RA, Hines S, Hume J, Jhangiani SN, Joshi V, Kovar CL, Lewis LR, Liu YS, Lopez J, Morgan MB, Nguyen NB, Okwuonu GO, Ruiz SJ, Santibanez J, Wright RA, Buhay C, Ding Y, Dugan-Rocha S, Herdandez J, Holder M, Sabo A, Egan A, Goodell J, Wilczek-Boney K, Fowler GR, Hitchens ME, Lozado RJ, Moen C, Steffen D, Warren JT, Zhang J, Chiu R, Schein JE, Durbin KJ, Havlak P, Jiang H, Liu Y, Qin X, Ren Y, Shen Y, Song H, Bell SN, Davis C, Johnson AJ, Lee S, Nazareth LV, Patel BM, Pu LL, Vattathil S, Williams RL Jr, Curry S, Hamilton C, Sodergren E, Wheeler DA, Barris W, Bennett GL, Eggen A, Green RD, Harhay GP, Hobbs M, Jann O, Keele JW, Kent MP, Lien S, McKay SD, McWilliam S, Ratnakumar A, Schnabel RD, Smith T, Snelling WM, Sonstegard TS, Stone RT, Sugimoto Y, Takasuga A, Taylor JF, Van Tassell CP, Macneil MD, Abatepaulo AR, Abbey CA, Ahola V, Almeida IG, Amadio AF, Anatriello E, Bahadue SM, Biase FH, Boldt CR, Carroll JA, Carvalho WA, Cervelatti EP, Chacko E, Chapin JE, Cheng Y, Choi J, Colley AJ, de Campos TA, De Donato M, Santos IK, de Oliveira CJ, Deobald H, Devinoy E, Donohue KE, Dovc P, Eberlein A, Fitzsimmons CJ, Franzin AM, Garcia GR, Genini S, Gladney CJ, Grant JR, Greaser ML, Green JA, Hadsell DL, Hakimov HA, Halgren R, Harrow JL, Hart EA, Hastings N, Hernandez M, Hu ZL, Ingham A, Iso-Touru T, Jamis C, Jensen K, Kapetis D, Kerr T, Khalil SS, Khatib H, Kolbehdari D, Kumar CG, Kumar D, Leach R, Lee JC, Li C, Logan KM, Malinverni R, Marques E, Martin WF, Martins NF, Maruyama SR, Mazza R, McLean KL, Medrano JF, Moreno BT, Moré DD, Muntean CT, Nandakumar HP, Nogueira MF, Olsaker I, Pant SD, Panzitta F, Pastor RC, Poli MA, Poslusny N, Rachagani S, Ranganathan S, Razpet A, Riggs PK, Rincon G, Rodriguez-Osorio N, Rodriguez-Zas SL, Romero NE, Rosenwald A, Sando L, Schmutz SM, Shen L, Sherman L, Southey BR, Lutzow YS, Sweedler JV, Tammen I, Telugu BP, Urbanski JM, Utsunomiya YT, Verschoor CP, Waardenberg AJ, Wang Z, Ward R, Weikard R, Welsh TH Jr, White SN, Wilming LG, Wunderlich KR, Yang J, Zhao FQ.

Science. 2009 Apr 24;324(5926):522-8. doi: 10.1126/science.1169588.

PMID:
19390049
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Community analysis of betaproteobacterial ammonia-oxidizing bacteria using the amoCAB operon.

Junier P, Kim OS, Junier T, Ahn TS, Imhoff JF, Witzel KP.

Appl Microbiol Biotechnol. 2009 May;83(1):175-88. doi: 10.1007/s00253-009-1923-x. Epub 2009 Mar 10.

PMID:
19274459
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

TRiFLe, a program for in silico terminal restriction fragment length polymorphism analysis with user-defined sequence sets.

Junier P, Junier T, Witzel KP.

Appl Environ Microbiol. 2008 Oct;74(20):6452-6. doi: 10.1128/AEM.01394-08. Epub 2008 Aug 29.

PMID:
18757578
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

The cis-acting replication elements define human enterovirus and rhinovirus species.

Cordey S, Gerlach D, Junier T, Zdobnov EM, Kaiser L, Tapparel C.

RNA. 2008 Aug;14(8):1568-78. doi: 10.1261/rna.1031408. Epub 2008 Jun 9.

PMID:
18541697
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Genome-wide search reveals a novel GacA-regulated small RNA in Pseudomonas species.

González N, Heeb S, Valverde C, Kay E, Reimmann C, Junier T, Haas D.

BMC Genomics. 2008 Apr 13;9:167. doi: 10.1186/1471-2164-9-167.

PMID:
18405392
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Comparative in silico analysis of PCR primers suited for diagnostics and cloning of ammonia monooxygenase genes from ammonia-oxidizing bacteria.

Junier P, Kim OS, Molina V, Limburg P, Junier T, Imhoff JF, Witzel KP.

FEMS Microbiol Ecol. 2008 Apr;64(1):141-52. doi: 10.1111/j.1574-6941.2007.00437.x. Epub 2008 Feb 1.

PMID:
18248438
[PubMed - indexed for MEDLINE]
20.

Biased distributions and decay of long interspersed nuclear elements in the chicken genome.

Abrusán G, Krambeck HJ, Junier T, Giordano J, Warburton PE.

Genetics. 2008 Jan;178(1):573-81. Epub 2007 Oct 18.

PMID:
17947446
[PubMed - indexed for MEDLINE]
Free PMC Article
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