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Results: 1 to 20 of 96

1.

Characterization of the 18S rRNA gene for designing universal eukaryote specific primers.

Hadziavdic K, Lekang K, Lanzen A, Jonassen I, Thompson EM, Troedsson C.

PLoS One. 2014 Feb 7;9(2):e87624. doi: 10.1371/journal.pone.0087624. eCollection 2014.

PMID:
24516555
[PubMed - in process]
Free PMC Article
2.

Surprising prokaryotic and eukaryotic diversity, community structure and biogeography of Ethiopian soda lakes.

Lanzén A, Simachew A, Gessesse A, Chmolowska D, Jonassen I, Øvreås L.

PLoS One. 2013 Aug 30;8(8):e72577. doi: 10.1371/journal.pone.0072577. eCollection 2013.

PMID:
24023625
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Gene set based integrated data analysis reveals phenotypic differences in a brain cancer model.

Petersen K, Rajcevic U, Abdul Rahim SA, Jonassen I, Kalland KH, Jimenez CR, Bjerkvig R, Niclou SP.

PLoS One. 2013 Jul 9;8(7):e68288. doi: 10.1371/journal.pone.0068288. Print 2013.

PMID:
23874576
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats.

Ison J, Kalas M, Jonassen I, Bolser D, Uludag M, McWilliam H, Malone J, Lopez R, Pettifer S, Rice P.

Bioinformatics. 2013 May 15;29(10):1325-32. doi: 10.1093/bioinformatics/btt113. Epub 2013 Mar 11.

PMID:
23479348
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Filtering duplicate reads from 454 pyrosequencing data.

Balzer S, Malde K, Grohme MA, Jonassen I.

Bioinformatics. 2013 Apr 1;29(7):830-6. doi: 10.1093/bioinformatics/btt047. Epub 2013 Feb 1.

PMID:
23376350
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Ligand-controlled assembly of hexamers, dihexamers, and linear multihexamer structures by the engineered acylated insulin degludec.

Steensgaard DB, Schluckebier G, Strauss HM, Norrman M, Thomsen JK, Friderichsen AV, Havelund S, Jonassen I.

Biochemistry. 2013 Jan 15;52(2):295-309. doi: 10.1021/bi3008609. Epub 2013 Jan 3.

PMID:
23256685
[PubMed - indexed for MEDLINE]
7.

CREST--classification resources for environmental sequence tags.

Lanzén A, Jørgensen SL, Huson DH, Gorfer M, Grindhaug SH, Jonassen I, Øvreås L, Urich T.

PLoS One. 2012;7(11):e49334. doi: 10.1371/journal.pone.0049334. Epub 2012 Nov 8.

PMID:
23145153
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Whole genome sequencing of the fish pathogen Francisella noatunensis subsp. orientalis Toba04 gives novel insights into Francisella evolution and pathogenecity.

Sridhar S, Sharma A, Kongshaug H, Nilsen F, Jonassen I.

BMC Genomics. 2012 Nov 6;13:598. doi: 10.1186/1471-2164-13-598.

PMID:
23131096
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Mycobacterium tuberculosis Mce1 protein complex initiates rapid induction of transcription of genes involved in substrate trafficking.

Stavrum R, Valvatne H, Stavrum AK, Riley LW, Ulvestad E, Jonassen I, Doherty TM, Grewal HM.

Genes Immun. 2012 Sep;13(6):496-502. doi: 10.1038/gene.2012.24. Epub 2012 Jun 14.

PMID:
22695749
[PubMed - indexed for MEDLINE]
10.

Exome sequencing and genetic testing for MODY.

Johansson S, Irgens H, Chudasama KK, Molnes J, Aerts J, Roque FS, Jonassen I, Levy S, Lima K, Knappskog PM, Bell GI, Molven A, Njølstad PR.

PLoS One. 2012;7(5):e38050. doi: 10.1371/journal.pone.0038050. Epub 2012 May 25.

PMID:
22662265
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Design of the novel protraction mechanism of insulin degludec, an ultra-long-acting basal insulin.

Jonassen I, Havelund S, Hoeg-Jensen T, Steensgaard DB, Wahlund PO, Ribel U.

Pharm Res. 2012 Aug;29(8):2104-14. doi: 10.1007/s11095-012-0739-z. Epub 2012 Apr 7.

PMID:
22485010
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Linkage-disequilibrium-based binning affects the interpretation of GWASs.

Christoforou A, Dondrup M, Mattingsdal M, Mattheisen M, Giddaluru S, Nöthen MM, Rietschel M, Cichon S, Djurovic S, Andreassen OA, Jonassen I, Steen VM, Puntervoll P, Le Hellard S.

Am J Hum Genet. 2012 Apr 6;90(4):727-33. doi: 10.1016/j.ajhg.2012.02.025. Epub 2012 Mar 22.

PMID:
22444669
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Modulation of transcriptional and inflammatory responses in murine macrophages by the Mycobacterium tuberculosis mammalian cell entry (Mce) 1 complex.

Stavrum R, Stavrum AK, Valvatne H, Riley LW, Ulvestad E, Jonassen I, Assmus J, Doherty TM, Grewal HM.

PLoS One. 2011;6(10):e26295. doi: 10.1371/journal.pone.0026295. Epub 2011 Oct 24. Erratum in: PLoS One. 2011;6(11). doi:10.1371/annotation/934c5cbd-c70d-40d0-9d65-36dbecd7ad17.

PMID:
22039457
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The genome sequence of Atlantic cod reveals a unique immune system.

Star B, Nederbragt AJ, Jentoft S, Grimholt U, Malmstrøm M, Gregers TF, Rounge TB, Paulsen J, Solbakken MH, Sharma A, Wetten OF, Lanzén A, Winer R, Knight J, Vogel JH, Aken B, Andersen O, Lagesen K, Tooming-Klunderud A, Edvardsen RB, Tina KG, Espelund M, Nepal C, Previti C, Karlsen BO, Moum T, Skage M, Berg PR, Gjøen T, Kuhl H, Thorsen J, Malde K, Reinhardt R, Du L, Johansen SD, Searle S, Lien S, Nilsen F, Jonassen I, Omholt SW, Stenseth NC, Jakobsen KS.

Nature. 2011 Aug 10;477(7363):207-10. doi: 10.1038/nature10342.

PMID:
21832995
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Exploring the limits of fold discrimination by structural alignment: a large scale benchmark using decoys of known fold.

Hollup SM, Sadowski MI, Jonassen I, Taylor WR.

Comput Biol Chem. 2011 Jun;35(3):174-88. doi: 10.1016/j.compbiolchem.2011.04.008. Epub 2011 May 13.

PMID:
21704264
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Systematic exploration of error sources in pyrosequencing flowgram data.

Balzer S, Malde K, Jonassen I.

Bioinformatics. 2011 Jul 1;27(13):i304-9. doi: 10.1093/bioinformatics/btr251.

PMID:
21685085
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Exploring the composition and diversity of microbial communities at the Jan Mayen hydrothermal vent field using RNA and DNA.

Lanzén A, Jørgensen SL, Bengtsson MM, Jonassen I, Øvreås L, Urich T.

FEMS Microbiol Ecol. 2011 Sep;77(3):577-89. doi: 10.1111/j.1574-6941.2011.01138.x. Epub 2011 Jul 4.

PMID:
21627670
[PubMed - indexed for MEDLINE]
18.

Gene expression patterns related to vascular invasion and aggressive features in endometrial cancer.

Mannelqvist M, Stefansson IM, Bredholt G, Hellem Bø T, Oyan AM, Jonassen I, Kalland KH, Salvesen HB, Akslen LA.

Am J Pathol. 2011 Feb;178(2):861-71. doi: 10.1016/j.ajpath.2010.10.040.

PMID:
21281818
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Specific cellular signal-transduction responses to in vivo combination therapy with ATRA, valproic acid and theophylline in acute myeloid leukemia.

Skavland J, Jørgensen KM, Hadziavdic K, Hovland R, Jonassen I, Bruserud O, Gjertsen BT.

Blood Cancer J. 2011 Feb;1(2):e4. doi: 10.1038/bcj.2011.2. Epub 2011 Feb 11.

PMID:
22829110
[PubMed]
Free PMC Article
20.

Sequencing the genome of the Atlantic salmon (Salmo salar).

Davidson WS, Koop BF, Jones SJ, Iturra P, Vidal R, Maass A, Jonassen I, Lien S, Omholt SW.

Genome Biol. 2010;11(9):403. doi: 10.1186/gb-2010-11-9-403. Epub 2010 Sep 30.

PMID:
20887641
[PubMed - indexed for MEDLINE]
Free PMC Article

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