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Items: 1 to 20 of 33

1.

Application of digital tomosynthesis in diagnosing spinal tuberculosis.

Jiao D, Yang HS, Yang DY, Tian W, Wang H, Ji HP.

Clin Imaging. 2016 May-Jun;40(3):461-4. doi: 10.1016/j.clinimag.2015.11.003. Epub 2015 Nov 7.

PMID:
27133687
2.

Haplotyping germline and cancer genomes with high-throughput linked-read sequencing.

Zheng GX, Lau BT, Schnall-Levin M, Jarosz M, Bell JM, Hindson CM, Kyriazopoulou-Panagiotopoulou S, Masquelier DA, Merrill L, Terry JM, Mudivarti PA, Wyatt PW, Bharadwaj R, Makarewicz AJ, Li Y, Belgrader P, Price AD, Lowe AJ, Marks P, Vurens GM, Hardenbol P, Montesclaros L, Luo M, Greenfield L, Wong A, Birch DE, Short SW, Bjornson KP, Patel P, Hopmans ES, Wood C, Kaur S, Lockwood GK, Stafford D, Delaney JP, Wu I, Ordonez HS, Grimes SM, Greer S, Lee JY, Belhocine K, Giorda KM, Heaton WH, McDermott GP, Bent ZW, Meschi F, Kondov NO, Wilson R, Bernate JA, Gauby S, Kindwall A, Bermejo C, Fehr AN, Chan A, Saxonov S, Ness KD, Hindson BJ, Ji HP.

Nat Biotechnol. 2016 Mar;34(3):303-11. doi: 10.1038/nbt.3432. Epub 2016 Feb 1.

PMID:
26829319
3.

Pan-cancer analysis of the extent and consequences of intratumor heterogeneity.

Andor N, Graham TA, Jansen M, Xia LC, Aktipis CA, Petritsch C, Ji HP, Maley CC.

Nat Med. 2016 Jan;22(1):105-13. doi: 10.1038/nm.3984. Epub 2015 Nov 30.

PMID:
26618723
4.

Emergence of Hemagglutinin Mutations During the Course of Influenza Infection.

Cushing A, Kamali A, Winters M, Hopmans ES, Bell JM, Grimes SM, Xia LC, Zhang NR, Moss RB, Holodniy M, Ji HP.

Sci Rep. 2015 Nov 5;5:16178. doi: 10.1038/srep16178.

5.

The Cancer Genome Atlas Clinical Explorer: a web and mobile interface for identifying clinical-genomic driver associations.

Lee H, Palm J, Grimes SM, Ji HP.

Genome Med. 2015 Oct 27;7:112. doi: 10.1186/s13073-015-0226-3.

6.

Correction to High sensitivity detection and quantitation of DNA copy number and single nucleotide variants with single color droplet digital PCR.

Miotke L, Lau BT, Rumma RT, Ji HP.

Anal Chem. 2015 Mar 3;87(5):3114. doi: 10.1021/acs.analchem.5b00061. Epub 2015 Feb 12. No abstract available.

7.

Allele-specific copy number profiling by next-generation DNA sequencing.

Chen H, Bell JM, Zavala NA, Ji HP, Zhang NR.

Nucleic Acids Res. 2015 Feb 27;43(4):e23. doi: 10.1093/nar/gku1252. Epub 2014 Dec 3.

8.

Metastatic tumor evolution and organoid modeling implicate TGFBR2 as a cancer driver in diffuse gastric cancer.

Nadauld LD, Garcia S, Natsoulis G, Bell JM, Miotke L, Hopmans ES, Xu H, Pai RK, Palm C, Regan JF, Chen H, Flaherty P, Ootani A, Zhang NR, Ford JM, Kuo CJ, Ji HP.

Genome Biol. 2014 Aug 27;15(8):428. doi: 10.1186/s13059-014-0428-9.

9.

MendeLIMS: a web-based laboratory information management system for clinical genome sequencing.

Grimes SM, Ji HP.

BMC Bioinformatics. 2014 Aug 27;15:290. doi: 10.1186/1471-2105-15-290.

10.

Oncogenic transformation of diverse gastrointestinal tissues in primary organoid culture.

Li X, Nadauld L, Ootani A, Corney DC, Pai RK, Gevaert O, Cantrell MA, Rack PG, Neal JT, Chan CW, Yeung T, Gong X, Yuan J, Wilhelmy J, Robine S, Attardi LD, Plevritis SK, Hung KE, Chen CZ, Ji HP, Kuo CJ.

Nat Med. 2014 Jul;20(7):769-77. doi: 10.1038/nm.3585. Epub 2014 May 25.

11.

A programmable method for massively parallel targeted sequencing.

Hopmans ES, Natsoulis G, Bell JM, Grimes SM, Sieh W, Ji HP.

Nucleic Acids Res. 2014 Jun;42(10):e88. doi: 10.1093/nar/gku282. Epub 2014 Apr 29.

12.

Identification of Insertion Deletion Mutations from Deep Targeted Resequencing.

Natsoulis G, Zhang N, Welch K, Bell J, Ji HP.

J Data Mining Genomics Proteomics. 2013 Jul 2;4(3). pii: 1000132.

13.

High sensitivity detection and quantitation of DNA copy number and single nucleotide variants with single color droplet digital PCR.

Miotke L, Lau BT, Rumma RT, Ji HP.

Anal Chem. 2014 Mar 4;86(5):2618-24. doi: 10.1021/ac403843j. Epub 2014 Feb 12. Erratum in: Anal Chem. 2015 Mar 3;87(5):3114. Anal Chem. 2014 May 6;86(9):4635.

14.

Systematic genomic identification of colorectal cancer genes delineating advanced from early clinical stage and metastasis.

Lee H, Flaherty P, Ji HP.

BMC Med Genomics. 2013 Dec 5;6:54. doi: 10.1186/1755-8794-6-54.

15.

RVD: a command-line program for ultrasensitive rare single nucleotide variant detection using targeted next-generation DNA resequencing.

Cushing A, Flaherty P, Hopmans E, Bell JM, Ji HP.

BMC Res Notes. 2013 May 23;6:206. doi: 10.1186/1756-0500-6-206.

16.
17.

Improving bioinformatic pipelines for exome variant calling.

Ji HP.

Genome Med. 2012 Jan 30;4(1):7. doi: 10.1186/gm306.

18.

Quantitative and Sensitive Detection of Cancer Genome Amplifications from Formalin Fixed Paraffin Embedded Tumors with Droplet Digital PCR.

Nadauld L, Regan JF, Miotke L, Pai RK, Longacre TA, Kwok SS, Saxonov S, Ford JM, Ji HP.

Transl Med (Sunnyvale). 2012;2(2). pii: 1000107.

19.

Performance comparison of whole-genome sequencing platforms.

Lam HY, Clark MJ, Chen R, Chen R, Natsoulis G, O'Huallachain M, Dewey FE, Habegger L, Ashley EA, Gerstein MB, Butte AJ, Ji HP, Snyder M.

Nat Biotechnol. 2011 Dec 18;30(1):78-82. doi: 10.1038/nbt.2065. Erratum in: Nat Biotechnol. 2012 Jun;30(6):562.

20.

Targeted sequencing library preparation by genomic DNA circularization.

Myllykangas S, Natsoulis G, Bell JM, Ji HP.

BMC Biotechnol. 2011 Dec 14;11:122. doi: 10.1186/1472-6750-11-122.

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