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Results: 1 to 20 of 24

1.

MendeLIMS: a web-based laboratory information management system for clinical genome sequencing.

Grimes SM, Ji HP.

BMC Bioinformatics. 2014 Aug 27;15(1):290. doi: 10.1186/1471-2105-15-290.

PMID:
25159034
[PubMed - in process]
Free PMC Article
2.

Oncogenic transformation of diverse gastrointestinal tissues in primary organoid culture.

Li X, Nadauld L, Ootani A, Corney DC, Pai RK, Gevaert O, Cantrell MA, Rack PG, Neal JT, Chan CW, Yeung T, Gong X, Yuan J, Wilhelmy J, Robine S, Attardi LD, Plevritis SK, Hung KE, Chen CZ, Ji HP, Kuo CJ.

Nat Med. 2014 Jul;20(7):769-77. doi: 10.1038/nm.3585. Epub 2014 May 25.

PMID:
24859528
[PubMed - in process]
3.

A programmable method for massively parallel targeted sequencing.

Hopmans ES, Natsoulis G, Bell JM, Grimes SM, Sieh W, Ji HP.

Nucleic Acids Res. 2014;42(10):e88. doi: 10.1093/nar/gku282. Epub 2014 Apr 29.

PMID:
24782526
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Identification of Insertion Deletion Mutations from Deep Targeted Resequencing.

Natsoulis G, Zhang N, Welch K, Bell J, Ji HP.

J Data Mining Genomics Proteomics. 2013 Jul 2;4(3). pii: 1000132.

PMID:
24511426
[PubMed]
Free PMC Article
5.

High sensitivity detection and quantitation of DNA copy number and single nucleotide variants with single color droplet digital PCR.

Miotke L, Lau BT, Rumma RT, Ji HP.

Anal Chem. 2014 Mar 4;86(5):2618-24. doi: 10.1021/ac403843j. Epub 2014 Feb 12. Erratum in: Anal Chem. 2014 May 6;86(9):4635.

PMID:
24483992
[PubMed - in process]
6.

Systematic genomic identification of colorectal cancer genes delineating advanced from early clinical stage and metastasis.

Lee H, Flaherty P, Ji HP.

BMC Med Genomics. 2013 Dec 5;6:54. doi: 10.1186/1755-8794-6-54.

PMID:
24308539
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

RVD: a command-line program for ultrasensitive rare single nucleotide variant detection using targeted next-generation DNA resequencing.

Cushing A, Flaherty P, Hopmans E, Bell JM, Ji HP.

BMC Res Notes. 2013 May 23;6:206. doi: 10.1186/1756-0500-6-206.

PMID:
23701658
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Identification of a novel deletion mutant strain in Saccharomyces cerevisiae that results in a microsatellite instability phenotype.

Ji HP, Morales S, Welch K, Yuen C, Farnam K, Ford JM.

Biodiscovery. 2012 Jul 23;(1). pii: 4.

PMID:
23667739
[PubMed]
Free PMC Article
9.

Improving bioinformatic pipelines for exome variant calling.

Ji HP.

Genome Med. 2012 Jan 30;4(1):7. doi: 10.1186/gm306.

PMID:
22289516
[PubMed]
Free PMC Article
10.

Quantitative and Sensitive Detection of Cancer Genome Amplifications from Formalin Fixed Paraffin Embedded Tumors with Droplet Digital PCR.

Nadauld L, Regan JF, Miotke L, Pai RK, Longacre TA, Kwok SS, Saxonov S, Ford JM, Ji HP.

Transl Med (Sunnyvale). 2012;2(2). pii: 1000107.

PMID:
23682346
[PubMed]
Free PMC Article
11.

Performance comparison of whole-genome sequencing platforms.

Lam HY, Clark MJ, Chen R, Chen R, Natsoulis G, O'Huallachain M, Dewey FE, Habegger L, Ashley EA, Gerstein MB, Butte AJ, Ji HP, Snyder M.

Nat Biotechnol. 2011 Dec 18;30(1):78-82. doi: 10.1038/nbt.2065. Erratum in: Nat Biotechnol. 2012 Jun;30(6):562.

PMID:
22178993
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Targeted sequencing library preparation by genomic DNA circularization.

Myllykangas S, Natsoulis G, Bell JM, Ji HP.

BMC Biotechnol. 2011 Dec 14;11:122. doi: 10.1186/1472-6750-11-122.

PMID:
22168766
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

The Human OligoGenome Resource: a database of oligonucleotide capture probes for resequencing target regions across the human genome.

Newburger DE, Natsoulis G, Grimes S, Bell JM, Davis RW, Batzoglou S, Ji HP.

Nucleic Acids Res. 2012 Jan;40(Database issue):D1137-43. doi: 10.1093/nar/gkr973. Epub 2011 Nov 18.

PMID:
22102592
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Efficient targeted resequencing of human germline and cancer genomes by oligonucleotide-selective sequencing.

Myllykangas S, Buenrostro JD, Natsoulis G, Bell JM, Ji HP.

Nat Biotechnol. 2011 Oct 23;29(11):1024-7. doi: 10.1038/nbt.1996.

PMID:
22020387
[PubMed - indexed for MEDLINE]
15.

Ultrasensitive detection of rare mutations using next-generation targeted resequencing.

Flaherty P, Natsoulis G, Muralidharan O, Winters M, Buenrostro J, Bell J, Brown S, Holodniy M, Zhang N, Ji HP.

Nucleic Acids Res. 2012 Jan;40(1):e2. doi: 10.1093/nar/gkr861. Epub 2011 Oct 19.

PMID:
22013163
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

A flexible approach for highly multiplexed candidate gene targeted resequencing.

Natsoulis G, Bell JM, Xu H, Buenrostro JD, Ordonez H, Grimes S, Newburger D, Jensen M, Zahn JM, Zhang N, Ji HP.

PLoS One. 2011;6(6):e21088. doi: 10.1371/journal.pone.0021088. Epub 2011 Jun 30.

PMID:
21738606
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Targeted deep resequencing of the human cancer genome using next-generation technologies.

Myllykangas S, Ji HP.

Biotechnol Genet Eng Rev. 2010;27:135-58. Review.

PMID:
21415896
[PubMed - indexed for MEDLINE]
18.

Effect of a mangosteen dietary supplement on human immune function: a randomized, double-blind, placebo-controlled trial.

Tang YP, Li PG, Kondo M, Ji HP, Kou Y, Ou B.

J Med Food. 2009 Aug;12(4):755-63. doi: 10.1089/jmf.2008.0204.

PMID:
19697997
[PubMed - indexed for MEDLINE]
19.

Molecular inversion probes reveal patterns of 9p21 deletion and copy number aberrations in childhood leukemia.

Schiffman JD, Wang Y, McPherson LA, Welch K, Zhang N, Davis R, Lacayo NJ, Dahl GV, Faham M, Ford JM, Ji HP.

Cancer Genet Cytogenet. 2009 Aug;193(1):9-18. doi: 10.1016/j.cancergencyto.2009.03.005.

PMID:
19602459
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Under-expression of Kalirin-7 Increases iNOS activity in cultured cells and correlates to elevated iNOS activity in Alzheimer's disease hippocampus.

Youn H, Ji I, Ji HP, Markesbery WR, Ji TH.

J Alzheimers Dis. 2007 Nov;12(3):271-81.

PMID:
18057561
[PubMed - indexed for MEDLINE]

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