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Results: 1 to 20 of 157

1.

Temporal disease trajectories condensed from population-wide registry data covering 6.2 million patients.

Jensen AB, Moseley PL, Oprea TI, Ellesøe SG, Eriksson R, Schmock H, Jensen PB, Jensen LJ, Brunak S.

Nat Commun. 2014 Jun 24;5:4022. doi: 10.1038/ncomms5022.

PMID:
24959948
[PubMed - in process]
Free PMC Article
2.

A comparison of protein kinases inhibitor screening methods using both enzymatic activity and binding affinity determination.

Rudolf AF, Skovgaard T, Knapp S, Jensen LJ, Berthelsen J.

PLoS One. 2014 Jun 10;9(6):e98800. doi: 10.1371/journal.pone.0098800. eCollection 2014.

PMID:
24915177
[PubMed - in process]
Free PMC Article
3.

KinomeXplorer: an integrated platform for kinome biology studies.

Horn H, Schoof EM, Kim J, Robin X, Miller ML, Diella F, Palma A, Cesareni G, Jensen LJ, Linding R.

Nat Methods. 2014 Jun;11(6):603-4. doi: 10.1038/nmeth.2968. No abstract available.

PMID:
24874572
[PubMed - indexed for MEDLINE]
4.

Predicting kinase activity in angiotensin receptor phosphoproteomes based on sequence-motifs and interactions.

Bøgebo R, Horn H, Olsen JV, Gammeltoft S, Jensen LJ, Hansen JL, Christensen GL.

PLoS One. 2014 Apr 10;9(4):e94672. doi: 10.1371/journal.pone.0094672. eCollection 2014.

PMID:
24722691
[PubMed - in process]
Free PMC Article
5.

DoReMi: context-based prioritization of linear motif matches.

Horn H, Haslam N, Jensen LJ.

PeerJ. 2014 Mar 20;2:e315. doi: 10.7717/peerj.315. eCollection 2014.

PMID:
24711967
[PubMed]
Free PMC Article
6.

Dose-specific adverse drug reaction identification in electronic patient records: temporal data mining in an inpatient psychiatric population.

Eriksson R, Werge T, Jensen LJ, Brunak S.

Drug Saf. 2014 Apr;37(4):237-47. doi: 10.1007/s40264-014-0145-z. Erratum in: Drug Saf. 2014 May;37(5):379.

PMID:
24634163
[PubMed - in process]
Free PMC Article
7.

Functional network analysis of obese and lean Göttingen minipigs elucidates changes in oxidative and inflammatory networks in obese pigs.

Boonen HC, Moesgaard SG, Birck MM, Christoffersen BO, Cirera S, Heegaard PM, Højbøge TR, Jensen LJ, Mortensen A, Olsen LH, Sheykhzade M, Tang J, Lykkesfeldt J.

Pflugers Arch. 2014 Mar 5. [Epub ahead of print]

PMID:
24590510
[PubMed - as supplied by publisher]
8.

COMPARTMENTS: unification and visualization of protein subcellular localization evidence.

Binder JX, Pletscher-Frankild S, Tsafou K, Stolte C, O'Donoghue SI, Schneider R, Jensen LJ.

Database (Oxford). 2014 Feb 25;2014:bau012. doi: 10.1093/database/bau012. Print 2014.

PMID:
24573882
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Proteomic analysis of arginine methylation sites in human cells reveals dynamic regulation during transcriptional arrest.

Sylvestersen KB, Horn H, Jungmichel S, Jensen LJ, Nielsen ML.

Mol Cell Proteomics. 2014 Aug;13(8):2072-88. doi: 10.1074/mcp.O113.032748. Epub 2014 Feb 21.

PMID:
24563534
[PubMed - in process]
10.

eggNOG v4.0: nested orthology inference across 3686 organisms.

Powell S, Forslund K, Szklarczyk D, Trachana K, Roth A, Huerta-Cepas J, Gabaldón T, Rattei T, Creevey C, Kuhn M, Jensen LJ, von Mering C, Bork P.

Nucleic Acids Res. 2014 Jan;42(Database issue):D231-9. doi: 10.1093/nar/gkt1253. Epub 2013 Dec 1.

PMID:
24297252
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

STITCH 4: integration of protein-chemical interactions with user data.

Kuhn M, Szklarczyk D, Pletscher-Frankild S, Blicher TH, von Mering C, Jensen LJ, Bork P.

Nucleic Acids Res. 2014 Jan;42(Database issue):D401-7. doi: 10.1093/nar/gkt1207. Epub 2013 Nov 28.

PMID:
24293645
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Protein-driven inference of miRNA-disease associations.

Mørk S, Pletscher-Frankild S, Palleja Caro A, Gorodkin J, Jensen LJ.

Bioinformatics. 2014 Feb 1;30(3):392-7. doi: 10.1093/bioinformatics/btt677. Epub 2013 Nov 21.

PMID:
24273243
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Are graph databases ready for bioinformatics?

Have CT, Jensen LJ.

Bioinformatics. 2013 Dec 15;29(24):3107-8. doi: 10.1093/bioinformatics/btt549. Epub 2013 Oct 17. No abstract available.

PMID:
24135261
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

A nondegenerate code of deleterious variants in Mendelian loci contributes to complex disease risk.

Blair DR, Lyttle CS, Mortensen JM, Bearden CF, Jensen AB, Khiabanian H, Melamed R, Rabadan R, Bernstam EV, Brunak S, Jensen LJ, Nicolae D, Shah NH, Grossman RL, Cox NJ, White KP, Rzhetsky A.

Cell. 2013 Sep 26;155(1):70-80. doi: 10.1016/j.cell.2013.08.030.

PMID:
24074861
[PubMed - indexed for MEDLINE]
15.

TIMP-1 increases expression and phosphorylation of proteins associated with drug resistance in breast cancer cells.

Hekmat O, Munk S, Fogh L, Yadav R, Francavilla C, Horn H, Würtz SØ, Schrohl AS, Damsgaard B, Rømer MU, Belling KC, Jensen NF, Gromova I, Bekker-Jensen DB, Moreira JM, Jensen LJ, Gupta R, Lademann U, Brünner N, Olsen JV, Stenvang J.

J Proteome Res. 2013 Sep 6;12(9):4136-51. doi: 10.1021/pr400457u. Epub 2013 Aug 21.

PMID:
23909892
[PubMed - indexed for MEDLINE]
16.

The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text.

Pafilis E, Frankild SP, Fanini L, Faulwetter S, Pavloudi C, Vasileiadou A, Arvanitidis C, Jensen LJ.

PLoS One. 2013 Jun 18;8(6):e65390. Print 2013.

PMID:
23823062
[PubMed - as supplied by publisher]
Free PMC Article
17.

Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse.

Orlando L, Ginolhac A, Zhang G, Froese D, Albrechtsen A, Stiller M, Schubert M, Cappellini E, Petersen B, Moltke I, Johnson PL, Fumagalli M, Vilstrup JT, Raghavan M, Korneliussen T, Malaspinas AS, Vogt J, Szklarczyk D, Kelstrup CD, Vinther J, Dolocan A, Stenderup J, Velazquez AM, Cahill J, Rasmussen M, Wang X, Min J, Zazula GD, Seguin-Orlando A, Mortensen C, Magnussen K, Thompson JF, Weinstock J, Gregersen K, Røed KH, Eisenmann V, Rubin CJ, Miller DC, Antczak DF, Bertelsen MF, Brunak S, Al-Rasheid KA, Ryder O, Andersson L, Mundy J, Krogh A, Gilbert MT, Kjær K, Sicheritz-Ponten T, Jensen LJ, Olsen JV, Hofreiter M, Nielsen R, Shapiro B, Wang J, Willerslev E.

Nature. 2013 Jul 4;499(7456):74-8. doi: 10.1038/nature12323. Epub 2013 Jun 26.

PMID:
23803765
[PubMed - indexed for MEDLINE]
18.

In vivo phosphoproteomics analysis reveals the cardiac targets of β-adrenergic receptor signaling.

Lundby A, Andersen MN, Steffensen AB, Horn H, Kelstrup CD, Francavilla C, Jensen LJ, Schmitt N, Thomsen MB, Olsen JV.

Sci Signal. 2013 Jun 4;6(278):rs11. doi: 10.1126/scisignal.2003506.

PMID:
23737553
[PubMed - indexed for MEDLINE]
19.

Dictionary construction and identification of possible adverse drug events in Danish clinical narrative text.

Eriksson R, Jensen PB, Frankild S, Jensen LJ, Brunak S.

J Am Med Inform Assoc. 2013 Sep-Oct;20(5):947-53. doi: 10.1136/amiajnl-2013-001708. Epub 2013 May 23.

PMID:
23703825
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Significance of K(ATP) channels, L-type Ca²⁺ channels and CYP450-4A enzymes in oxygen sensing in mouse cremaster muscle arterioles in vivo.

Ngo AT, Riemann M, Holstein-Rathlou NH, Torp-Pedersen C, Jensen LJ.

BMC Physiol. 2013 May 12;13:8. doi: 10.1186/1472-6793-13-8.

PMID:
23663730
[PubMed - indexed for MEDLINE]
Free PMC Article

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