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Results: 12

1.

Contrasting expression patterns of coding and noncoding parts of the human genome upon oxidative stress.

Giannakakis A, Zhang J, Jenjaroenpun P, Nama S, Zainolabidin N, Aau MY, Yarmishyn AA, Vaz C, Ivshina AV, Grinchuk OV, Voorhoeve M, Vardy LA, Sampath P, Kuznetsov VA, Kurochkin IV, Guccione E.

Sci Rep. 2015 May 29;5:9737. doi: 10.1038/srep09737.

2.

Duplex stem-loop-containing quadruplex motifs in the human genome: a combined genomic and structural study.

Lim KW, Jenjaroenpun P, Low ZJ, Khong ZJ, Ng YS, Kuznetsov VA, Phan AT.

Nucleic Acids Res. 2015 Jun 23;43(11):5630-46. doi: 10.1093/nar/gkv355. Epub 2015 May 9.

3.

QmRLFS-finder: a model, web server and stand-alone tool for prediction and analysis of R-loop forming sequences.

Jenjaroenpun P, Wongsurawat T, Yenamandra SP, Kuznetsov VA.

Nucleic Acids Res. 2015 Jul 1;43(W1):W527-34. doi: 10.1093/nar/gkv344. Epub 2015 Apr 16.

4.

The TTSMI database: a catalog of triplex target DNA sites associated with genes and regulatory elements in the human genome.

Jenjaroenpun P, Chew CS, Yong TP, Choowongkomon K, Thammasorn W, Kuznetsov VA.

Nucleic Acids Res. 2015 Jan;43(Database issue):D110-6. doi: 10.1093/nar/gku970. Epub 2014 Oct 16.

5.

R-loops in proliferating cells but not in the brain: implications for AOA2 and other autosomal recessive ataxias.

Yeo AJ, Becherel OJ, Luff JE, Cullen JK, Wongsurawat T, Jenjaroenpun P, Kuznetsov VA, McKinnon PJ, Lavin MF.

PLoS One. 2014 Mar 17;9(3):e90219. doi: 10.1371/journal.pone.0090219. eCollection 2014. Erratum in: PLoS One. 2014;9(8):e105258. Jenjaroenpoon, Piroon [corrected to Jenjaroenpun, Piroon].

6.

Role of genomic architecture in the expression dynamics of long noncoding RNAs during differentiation of human neuroblastoma cells.

Batagov AO, Yarmishyn AA, Jenjaroenpun P, Tan JZ, Nishida Y, Kurochkin IV.

BMC Syst Biol. 2013 Oct 16;7 Suppl 3:S11. doi: 10.1186/1752-0509-7-S3-S11.

7.

Characterization of RNA in exosomes secreted by human breast cancer cell lines using next-generation sequencing.

Jenjaroenpun P, Kremenska Y, Nair VM, Kremenskoy M, Joseph B, Kurochkin IV.

PeerJ. 2013 Nov 5;1:e201. doi: 10.7717/peerj.201. eCollection 2013.

8.

Ecotopic viral integration site 1 (EVI1) regulates multiple cellular processes important for cancer and is a synergistic partner for FOS protein in invasive tumors.

Bard-Chapeau EA, Jeyakani J, Kok CH, Muller J, Chua BQ, Gunaratne J, Batagov A, Jenjaroenpun P, Kuznetsov VA, Wei CL, D'Andrea RJ, Bourque G, Jenkins NA, Copeland NG.

Proc Natl Acad Sci U S A. 2012 Feb 7;109(6):2168-73. doi: 10.1073/pnas.1119229109. Epub 2012 Jan 19.

9.

Quantitative model of R-loop forming structures reveals a novel level of RNA-DNA interactome complexity.

Wongsurawat T, Jenjaroenpun P, Kwoh CK, Kuznetsov V.

Nucleic Acids Res. 2012 Jan;40(2):e16. doi: 10.1093/nar/gkr1075. Epub 2011 Nov 25.

10.

Statistics of protein-DNA binding and the total number of binding sites for a transcription factor in the mammalian genome.

Kuznetsov VA, Singh O, Jenjaroenpun P.

BMC Genomics. 2010 Feb 10;11 Suppl 1:S12. doi: 10.1186/1471-2164-11-S1-S12.

11.
12.

Integrative analysis of the human cis-antisense gene pairs, miRNAs and their transcription regulation patterns.

Grinchuk OV, Jenjaroenpun P, Orlov YL, Zhou J, Kuznetsov VA.

Nucleic Acids Res. 2010 Jan;38(2):534-47. doi: 10.1093/nar/gkp954. Epub 2009 Nov 11.

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