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Results: 13

1.

A controlled vocabulary for pathway entities and events.

Jupe S, Jassal B, Williams M, Wu G.

Database (Oxford). 2014 Jun 20;2014. pii: bau060. doi: 10.1093/database/bau060. Print 2014.

PMID:
24951798
[PubMed - in process]
Free PMC Article
2.

The Reactome pathway knowledgebase.

Croft D, Mundo AF, Haw R, Milacic M, Weiser J, Wu G, Caudy M, Garapati P, Gillespie M, Kamdar MR, Jassal B, Jupe S, Matthews L, May B, Palatnik S, Rothfels K, Shamovsky V, Song H, Williams M, Birney E, Hermjakob H, Stein L, D'Eustachio P.

Nucleic Acids Res. 2014 Jan;42(Database issue):D472-7. doi: 10.1093/nar/gkt1102. Epub 2013 Nov 15.

PMID:
24243840
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

The EBI enzyme portal.

Alcántara R, Onwubiko J, Cao H, Matos Pd, Cham JA, Jacobsen J, Holliday GL, Fischer JD, Rahman SA, Jassal B, Goujon M, Rowland F, Velankar S, López R, Overington JP, Kleywegt GJ, Hermjakob H, O'Donovan C, Martín MJ, Thornton JM, Steinbeck C.

Nucleic Acids Res. 2013 Jan;41(Database issue):D773-80. doi: 10.1093/nar/gks1112. Epub 2012 Nov 21.

PMID:
23175605
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Pathway annotation and analysis with Reactome: the solute carrier class of membrane transporters.

Jassal B.

Hum Genomics. 2011 May;5(4):310-5.

PMID:
21712192
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

The annotation of the asparagine N-linked glycosylation pathway in the Reactome database.

Dall'Olio GM, Jassal B, Montanucci L, Gagneux P, Bertranpetit J, Laayouni H.

Glycobiology. 2011 Nov;21(11):1395-400. doi: 10.1093/glycob/cwq215. Epub 2011 Jan 2.

PMID:
21199820
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Reactome: a database of reactions, pathways and biological processes.

Croft D, O'Kelly G, Wu G, Haw R, Gillespie M, Matthews L, Caudy M, Garapati P, Gopinath G, Jassal B, Jupe S, Kalatskaya I, Mahajan S, May B, Ndegwa N, Schmidt E, Shamovsky V, Yung C, Birney E, Hermjakob H, D'Eustachio P, Stein L.

Nucleic Acids Res. 2011 Jan;39(Database issue):D691-7. doi: 10.1093/nar/gkq1018. Epub 2010 Nov 9.

PMID:
21067998
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

The systematic annotation of the three main GPCR families in Reactome.

Jassal B, Jupe S, Caudy M, Birney E, Stein L, Hermjakob H, D'Eustachio P.

Database (Oxford). 2010 Jul 29;2010:baq018. doi: 10.1093/database/baq018.

PMID:
20671204
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Reactome knowledgebase of human biological pathways and processes.

Matthews L, Gopinath G, Gillespie M, Caudy M, Croft D, de Bono B, Garapati P, Hemish J, Hermjakob H, Jassal B, Kanapin A, Lewis S, Mahajan S, May B, Schmidt E, Vastrik I, Wu G, Birney E, Stein L, D'Eustachio P.

Nucleic Acids Res. 2009 Jan;37(Database issue):D619-22. doi: 10.1093/nar/gkn863. Epub 2008 Nov 3.

PMID:
18981052
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

RIBDB: an SRS based infrastructure for REALIS.

Rice P, Jassal B, de Daruvar A.

Comp Funct Genomics. 2002;3(1):35-6. doi: 10.1002/cfg.139.

PMID:
18628878
[PubMed]
Free PMC Article
10.

Reactome: a knowledge base of biologic pathways and processes.

Vastrik I, D'Eustachio P, Schmidt E, Gopinath G, Croft D, de Bono B, Gillespie M, Jassal B, Lewis S, Matthews L, Wu G, Birney E, Stein L.

Genome Biol. 2007;8(3):R39. Erratum in: Genome Biol. 2009 Feb 4;10(2):402. Joshi-Tope, Geeta [removed].

PMID:
17367534
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Reactome: a knowledgebase of biological pathways.

Joshi-Tope G, Gillespie M, Vastrik I, D'Eustachio P, Schmidt E, de Bono B, Jassal B, Gopinath GR, Wu GR, Matthews L, Lewis S, Birney E, Stein L.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D428-32.

PMID:
15608231
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The Genome Knowledgebase: a resource for biologists and bioinformaticists.

Joshi-Tope G, Vastrik I, Gopinath GR, Matthews L, Schmidt E, Gillespie M, D'Eustachio P, Jassal B, Lewis S, Wu G, Birney E, Stein L.

Cold Spring Harb Symp Quant Biol. 2003;68:237-43. No abstract available.

PMID:
15338623
[PubMed - indexed for MEDLINE]
13.

The complete nucleotide sequence of chromosome 3 of Plasmodium falciparum.

Bowman S, Lawson D, Basham D, Brown D, Chillingworth T, Churcher CM, Craig A, Davies RM, Devlin K, Feltwell T, Gentles S, Gwilliam R, Hamlin N, Harris D, Holroyd S, Hornsby T, Horrocks P, Jagels K, Jassal B, Kyes S, McLean J, Moule S, Mungall K, Murphy L, Oliver K, Quail MA, Rajandream MA, Rutter S, Skelton J, Squares R, Squares S, Sulston JE, Whitehead S, Woodward JR, Newbold C, Barrell BG.

Nature. 1999 Aug 5;400(6744):532-8.

PMID:
10448855
[PubMed - indexed for MEDLINE]

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