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Results: 1 to 20 of 83

1.

NDH expression marks major transitions in plant evolution and reveals coordinate intracellular gene loss.

Ruhlman TA, Chang WJ, Chen JJ, Huang YT, Chan MT, Zhang J, Liao C, Blazier JC, Jin X, Shih MC, Jansen RK, Lin CS.

BMC Plant Biol. 2015 Apr 11;15(1):100.

PMID:
25886915
2.

RNA-Seq analysis of the wild barley (H. spontaneum) leaf transcriptome under salt stress.

Bahieldin A, Atef A, Sabir JS, Gadalla NO, Edris S, Alzohairy AM, Radhwan NA, Baeshen MN, Ramadan AM, Eissa HF, Hassan SM, Baeshen AA, Abuzinadah O, Al-Kordy MA, El-Domyati FM, Jansen RK.

C R Biol. 2015 Apr 13. pii: S1631-0691(15)00088-8. doi: 10.1016/j.crvi.2015.03.010. [Epub ahead of print]

PMID:
25882349
3.

Dissecting signal and noise in diatom chloroplast protein encoding genes with phylogenetic information profiling.

Theriot EC, Ashworth MP, Nakov T, Ruck E, Jansen RK.

Mol Phylogenet Evol. 2015 Apr 4. pii: S1055-7903(15)00069-X. doi: 10.1016/j.ympev.2015.03.012. [Epub ahead of print]

PMID:
25848969
4.

Coordinated Rates of Evolution between Interacting Plastid and Nuclear Genes in Geraniaceae.

Zhang J, Ruhlman TA, Sabir J, Blazier JC, Jansen RK.

Plant Cell. 2015 Mar;27(3):563-73. doi: 10.1105/tpc.114.134353. Epub 2015 Feb 27.

PMID:
25724640
6.

Corrected sequence of the wheat plastid genome.

Bahieldin A, Al-Kordy MA, Shokry AM, Gadalla NO, Al-Hejin AM, Sabir JS, Hassan SM, Al-Ahmadi AA, Schwarz EN, Eissa HF, El-Domyati FM, Jansen RK.

C R Biol. 2014 Sep;337(9):499-502. doi: 10.1016/j.crvi.2014.07.001. Epub 2014 Aug 5.

PMID:
25242688
7.

Conserved gene order and expanded inverted repeats characterize plastid genomes of Thalassiosirales.

Sabir JS, Yu M, Ashworth MP, Baeshen NA, Baeshen MN, Bahieldin A, Theriot EC, Jansen RK.

PLoS One. 2014 Sep 18;9(9):e107854. doi: 10.1371/journal.pone.0107854. eCollection 2014.

8.

Complete sequences of organelle genomes from the medicinal plant Rhazya stricta (Apocynaceae) and contrasting patterns of mitochondrial genome evolution across asterids.

Park S, Ruhlman TA, Sabir JS, Mutwakil MH, Baeshen MN, Sabir MJ, Baeshen NA, Jansen RK.

BMC Genomics. 2014 May 28;15:405. doi: 10.1186/1471-2164-15-405.

9.

Whole mitochondrial and plastid genome SNP analysis of nine date palm cultivars reveals plastid heteroplasmy and close phylogenetic relationships among cultivars.

Sabir JS, Arasappan D, Bahieldin A, Abo-Aba S, Bafeel S, Zari TA, Edris S, Shokry AM, Gadalla NO, Ramadan AM, Atef A, Al-Kordy MA, El-Domyati FM, Jansen RK.

PLoS One. 2014 Apr 9;9(4):e94158. doi: 10.1371/journal.pone.0094158. eCollection 2014.

10.

The plastid genomes of flowering plants.

Ruhlman TA, Jansen RK.

Methods Mol Biol. 2014;1132:3-38. doi: 10.1007/978-1-62703-995-6_1.

PMID:
24599844
11.

Serial gene losses and foreign DNA underlie size and sequence variation in the plastid genomes of diatoms.

Ruck EC, Nakov T, Jansen RK, Theriot EC, Alverson AJ.

Genome Biol Evol. 2014 Mar;6(3):644-54. doi: 10.1093/gbe/evu039.

12.

Characterization of ten date palm (Phoenix dactylifera L.) cultivars from Saudi Arabia using AFLP and ISSR markers.

Sabir JS, Abo-Aba S, Bafeel S, Zari TA, Edris S, Shokry AM, Atef A, Gadalla NO, Ramadan AM, Al-Kordy MA, El-Domyati FM, Jansen RK, Bahieldin A.

C R Biol. 2014 Jan;337(1):6-18. doi: 10.1016/j.crvi.2013.11.003. Epub 2013 Dec 16.

PMID:
24439547
13.

Comparative analyses of two Geraniaceae transcriptomes using next-generation sequencing.

Zhang J, Ruhlman TA, Mower JP, Jansen RK.

BMC Plant Biol. 2013 Dec 29;13:228. doi: 10.1186/1471-2229-13-228.

14.

Reconstruction of the ancestral plastid genome in Geraniaceae reveals a correlation between genome rearrangements, repeats, and nucleotide substitution rates.

Weng ML, Blazier JC, Govindu M, Jansen RK.

Mol Biol Evol. 2014 Mar;31(3):645-59. doi: 10.1093/molbev/mst257. Epub 2013 Dec 12.

15.

Detection of phytochrome-like genes from Rhazya stricta (Apocynaceae) using de novo genome assembly.

Sabir JS, Baeshen NA, Shokry AM, Gadalla NO, Edris S, Mutwakil MH, Ramadan AM, Atef A, Al-Kordy MA, Abuzinadah OA, El-Domyati FM, Jansen RK, Bahieldin A.

C R Biol. 2013 Nov-Dec;336(11-12):521-9. doi: 10.1016/j.crvi.2013.10.009. Epub 2013 Nov 13.

PMID:
24296076
16.

Transposable elements domesticated and neofunctionalized by eukaryotic genomes.

Alzohairy AM, Gyulai G, Jansen RK, Bahieldin A.

Plasmid. 2013 Jan;69(1):1-15. doi: 10.1016/j.plasmid.2012.08.001. Epub 2012 Aug 30. Review.

PMID:
22960324
17.

Phylogeny, rate variation, and genome size evolution of Pelargonium (Geraniaceae).

Weng ML, Ruhlman TA, Gibby M, Jansen RK.

Mol Phylogenet Evol. 2012 Sep;64(3):654-70. doi: 10.1016/j.ympev.2012.05.026. Epub 2012 Jun 4.

PMID:
22677167
18.

Use of ultra rapid opioid detoxification in the treatment of US military burn casualties.

Maani CV, DeSocio PA, Jansen RK, Merrell JD, McGhee LL, Young A, Williams JF, Tyrell K, Jackson BA, Serio-Melvin ML, Blackbourne LH, Renz EM.

J Trauma. 2011 Jul;71(1 Suppl):S114-9. doi: 10.1097/TA.0b013e3182219209. Review.

PMID:
21795869
19.

Recent loss of plastid-encoded ndh genes within Erodium (Geraniaceae).

Chris Blazier J, Guisinger MM, Jansen RK.

Plant Mol Biol. 2011 Jul;76(3-5):263-72. doi: 10.1007/s11103-011-9753-5. Epub 2011 Feb 16.

PMID:
21327834
20.

Complete plastid genome sequences of three Rosids (Castanea, Prunus, Theobroma): evidence for at least two independent transfers of rpl22 to the nucleus.

Jansen RK, Saski C, Lee SB, Hansen AK, Daniell H.

Mol Biol Evol. 2011 Jan;28(1):835-47. doi: 10.1093/molbev/msq261. Epub 2010 Oct 8.

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