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Results: 1 to 20 of 76

1.

Complete sequences of organelle genomes from the medicinal plant Rhazya stricta (Apocynaceae) and contrasting patterns of mitochondrial genome evolution across asterids.

Park S, Ruhlman TA, Sabir JS, Mutwakil MH, Baeshen MN, Sabir MJ, Baeshen NA, Jansen RK.

BMC Genomics. 2014 May 28;15:405. doi: 10.1186/1471-2164-15-405.

PMID:
24884625
[PubMed - in process]
Free PMC Article
2.

Whole mitochondrial and plastid genome SNP analysis of nine date palm cultivars reveals plastid heteroplasmy and close phylogenetic relationships among cultivars.

Sabir JS, Arasappan D, Bahieldin A, Abo-Aba S, Bafeel S, Zari TA, Edris S, Shokry AM, Gadalla NO, Ramadan AM, Atef A, Al-Kordy MA, El-Domyati FM, Jansen RK.

PLoS One. 2014 Apr 9;9(4):e94158. doi: 10.1371/journal.pone.0094158. eCollection 2014.

PMID:
24718264
[PubMed - in process]
Free PMC Article
3.

The plastid genomes of flowering plants.

Ruhlman TA, Jansen RK.

Methods Mol Biol. 2014;1132:3-38. doi: 10.1007/978-1-62703-995-6_1.

PMID:
24599844
[PubMed - in process]
4.

Serial gene losses and foreign DNA underlie size and sequence variation in the plastid genomes of diatoms.

Ruck EC, Nakov T, Jansen RK, Theriot EC, Alverson AJ.

Genome Biol Evol. 2014 Mar;6(3):644-54. doi: 10.1093/gbe/evu039.

PMID:
24567305
[PubMed - in process]
Free PMC Article
5.

Characterization of ten date palm (Phoenix dactylifera L.) cultivars from Saudi Arabia using AFLP and ISSR markers.

Sabir JS, Abo-Aba S, Bafeel S, Zari TA, Edris S, Shokry AM, Atef A, Gadalla NO, Ramadan AM, Al-Kordy MA, El-Domyati FM, Jansen RK, Bahieldin A.

C R Biol. 2014 Jan;337(1):6-18. doi: 10.1016/j.crvi.2013.11.003. Epub 2013 Dec 16.

PMID:
24439547
[PubMed - in process]
6.

Comparative analyses of two Geraniaceae transcriptomes using next-generation sequencing.

Zhang J, Ruhlman TA, Mower JP, Jansen RK.

BMC Plant Biol. 2013 Dec 29;13:228. doi: 10.1186/1471-2229-13-228.

PMID:
24373163
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Reconstruction of the ancestral plastid genome in geraniaceae reveals a correlation between genome rearrangements, repeats, and nucleotide substitution rates.

Weng ML, Blazier JC, Govindu M, Jansen RK.

Mol Biol Evol. 2014 Mar;31(3):645-59. doi: 10.1093/molbev/mst257. Epub 2013 Dec 12.

PMID:
24336877
[PubMed - in process]
8.

Detection of phytochrome-like genes from Rhazya stricta (Apocynaceae) using de novo genome assembly.

Sabir JS, Baeshen NA, Shokry AM, Gadalla NO, Edris S, Mutwakil MH, Ramadan AM, Atef A, Al-Kordy MA, Abuzinadah OA, El-Domyati FM, Jansen RK, Bahieldin A.

C R Biol. 2013 Nov-Dec;336(11-12):521-9. doi: 10.1016/j.crvi.2013.10.009. Epub 2013 Nov 13.

PMID:
24296076
[PubMed - indexed for MEDLINE]
9.

Transposable elements domesticated and neofunctionalized by eukaryotic genomes.

Alzohairy AM, Gyulai G, Jansen RK, Bahieldin A.

Plasmid. 2013 Jan;69(1):1-15. doi: 10.1016/j.plasmid.2012.08.001. Epub 2012 Aug 30. Review.

PMID:
22960324
[PubMed - indexed for MEDLINE]
10.

Phylogeny, rate variation, and genome size evolution of Pelargonium (Geraniaceae).

Weng ML, Ruhlman TA, Gibby M, Jansen RK.

Mol Phylogenet Evol. 2012 Sep;64(3):654-70. doi: 10.1016/j.ympev.2012.05.026. Epub 2012 Jun 4.

PMID:
22677167
[PubMed - indexed for MEDLINE]
11.

Use of ultra rapid opioid detoxification in the treatment of US military burn casualties.

Maani CV, DeSocio PA, Jansen RK, Merrell JD, McGhee LL, Young A, Williams JF, Tyrell K, Jackson BA, Serio-Melvin ML, Blackbourne LH, Renz EM.

J Trauma. 2011 Jul;71(1 Suppl):S114-9. doi: 10.1097/TA.0b013e3182219209. Review.

PMID:
21795869
[PubMed - indexed for MEDLINE]
12.

Recent loss of plastid-encoded ndh genes within Erodium (Geraniaceae).

Chris Blazier J, Guisinger MM, Jansen RK.

Plant Mol Biol. 2011 Jul;76(3-5):263-72. doi: 10.1007/s11103-011-9753-5. Epub 2011 Feb 16.

PMID:
21327834
[PubMed - indexed for MEDLINE]
13.

Complete plastid genome sequences of three Rosids (Castanea, Prunus, Theobroma): evidence for at least two independent transfers of rpl22 to the nucleus.

Jansen RK, Saski C, Lee SB, Hansen AK, Daniell H.

Mol Biol Evol. 2011 Jan;28(1):835-47. doi: 10.1093/molbev/msq261. Epub 2010 Oct 8.

PMID:
20935065
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Extreme reconfiguration of plastid genomes in the angiosperm family Geraniaceae: rearrangements, repeats, and codon usage.

Guisinger MM, Kuehl JV, Boore JL, Jansen RK.

Mol Biol Evol. 2011 Jan;28(1):583-600. doi: 10.1093/molbev/msq229. Epub 2010 Aug 30. Erratum in: Mol Biol Evol. 2011 Apr;28(4):1543.

PMID:
20805190
[PubMed - indexed for MEDLINE]
Free Article
15.

Implications of the plastid genome sequence of typha (typhaceae, poales) for understanding genome evolution in poaceae.

Guisinger MM, Chumley TW, Kuehl JV, Boore JL, Jansen RK.

J Mol Evol. 2010 Feb;70(2):149-66. doi: 10.1007/s00239-009-9317-3. Epub 2010 Jan 21.

PMID:
20091301
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Molecular systematics of the neotropical genus Psiguria (Cucurbitaceae): Implications for phylogeny and species identification.

Steele PR, Friar LM, Gilbert LE, Jansen RK.

Am J Bot. 2010 Jan;97(1):156-73. doi: 10.3732/ajb.0900192. Epub 2009 Dec 18.

PMID:
21622376
[PubMed]
Free Article
17.

Phylogeny of Barnadesioideae (Asteraceae) inferred from DNA sequence data and morphology.

Gruenstaeudl M, Urtubey E, Jansen RK, Samuel R, Barfuss MH, Stuessy TF.

Mol Phylogenet Evol. 2009 Jun;51(3):572-87. doi: 10.1016/j.ympev.2009.01.023. Epub 2009 Mar 3.

PMID:
19264147
[PubMed - indexed for MEDLINE]
18.

Extensive reorganization of the plastid genome of Trifolium subterraneum (Fabaceae) is associated with numerous repeated sequences and novel DNA insertions.

Cai Z, Guisinger M, Kim HG, Ruck E, Blazier JC, McMurtry V, Kuehl JV, Boore J, Jansen RK.

J Mol Evol. 2008 Dec;67(6):696-704. doi: 10.1007/s00239-008-9180-7.

PMID:
19018585
[PubMed - indexed for MEDLINE]
19.

Genome-wide analyses of Geraniaceae plastid DNA reveal unprecedented patterns of increased nucleotide substitutions.

Guisinger MM, Kuehl JV, Boore JL, Jansen RK.

Proc Natl Acad Sci U S A. 2008 Nov 25;105(47):18424-9. doi: 10.1073/pnas.0806759105. Epub 2008 Nov 14.

PMID:
19011103
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Complete plastid genome sequence of the chickpea (Cicer arietinum) and the phylogenetic distribution of rps12 and clpP intron losses among legumes (Leguminosae).

Jansen RK, Wojciechowski MF, Sanniyasi E, Lee SB, Daniell H.

Mol Phylogenet Evol. 2008 Sep;48(3):1204-17. doi: 10.1016/j.ympev.2008.06.013. Epub 2008 Jun 27.

PMID:
18638561
[PubMed - indexed for MEDLINE]
Free PMC Article

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