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Items: 19

1.

Phylotranscriptomic analysis uncovers a wealth of tissue inhibitor of metalloproteinases variants in echinoderms.

Clouse RM, Linchangco GV Jr, Kerr AM, Reid RW, Janies DA.

R Soc Open Sci. 2015 Dec 4;2(12):150377. doi: 10.1098/rsos.150377. eCollection 2015 Dec.

2.

EchinoDB, an application for comparative transcriptomics of deeply-sampled clades of echinoderms.

Janies DA, Witter Z, Linchangco GV, Foltz DW, Miller AK, Kerr AM, Jay J, Reid RW, Wray GA.

BMC Bioinformatics. 2016 Jan 22;17:48. doi: 10.1186/s12859-016-0883-2.

3.

Identification of a neuropeptide precursor protein that gives rise to a "cocktail" of peptides that bind Cu(II) and generate metal-linked dimers.

Jones CE, Zandawala M, Semmens DC, Anderson S, Hanson GR, Janies DA, Elphick MR.

Biochim Biophys Acta. 2016 Jan;1860(1 Pt A):57-66. doi: 10.1016/j.bbagen.2015.10.008. Epub 2015 Oct 22.

PMID:
26475641
4.

Comparative Phylogenetic Studies on Schistosoma japonicum and Its Snail Intermediate Host Oncomelania hupensis: Origins, Dispersal and Coevolution.

Attwood SW, Ibaraki M, Saitoh Y, Nihei N, Janies DA.

PLoS Negl Trop Dis. 2015 Jul 31;9(7):e0003935. doi: 10.1371/journal.pntd.0003935. eCollection 2015.

5.

Cladograms with Path to Event (ClaPTE): a novel algorithm to detect associations between genotypes or phenotypes using phylogenies.

Handelman SK, Aaronson JM, Seweryn M, Voronkin I, Kwiek JJ, Sadee W, Verducci JS, Janies DA.

Comput Biol Med. 2015 Mar;58:1-13. doi: 10.1016/j.compbiomed.2014.12.013. Epub 2014 Dec 24.

6.

Reassortment Networks and the evolution of pandemic H1N1 swine-origin influenza.

Bokhari SH, Pomeroy LW, Janies DA.

IEEE/ACM Trans Comput Biol Bioinform. 2012 Jan-Feb;9(1):214-27. doi: 10.1109/TCBB.2011.95.

PMID:
22076498
7.

Global spread and evolution of viral haemorrhagic septicaemia virus.

Studer J, Janies DA.

J Fish Dis. 2011 Oct;34(10):741-7. doi: 10.1111/j.1365-2761.2011.01290.x.

PMID:
21916899
8.

CORE: a phylogenetically-curated 16S rDNA database of the core oral microbiome.

Griffen AL, Beall CJ, Firestone ND, Gross EL, Difranco JM, Hardman JH, Vriesendorp B, Faust RA, Janies DA, Leys EJ.

PLoS One. 2011 Apr 22;6(4):e19051. doi: 10.1371/journal.pone.0019051.

9.

Echinoderm phylogeny including Xyloplax, a progenetic asteroid.

Janies DA, Voight JR, Daly M.

Syst Biol. 2011 Jul;60(4):420-38. doi: 10.1093/sysbio/syr044. Epub 2011 Apr 27.

PMID:
21525529
10.

Bacterial 16S sequence analysis of severe caries in young permanent teeth.

Gross EL, Leys EJ, Gasparovich SR, Firestone ND, Schwartzbaum JA, Janies DA, Asnani K, Griffen AL.

J Clin Microbiol. 2010 Nov;48(11):4121-8. doi: 10.1128/JCM.01232-10. Epub 2010 Sep 8.

11.

Genome informatics of influenza A: from data sharing to shared analytical capabilities.

Janies DA, Voronkin IO, Das M, Hardman J, Treseder TW, Studer J.

Anim Health Res Rev. 2010 Jun;11(1):73-9. doi: 10.1017/S1466252310000083. Review.

PMID:
20591214
12.

Reassortment networks for investigating the evolution of segmented viruses.

Bokhari SH, Janies DA.

IEEE/ACM Trans Comput Biol Bioinform. 2010 Apr-Jun;7(2):288-98. doi: 10.1109/TCBB.2008.73.

PMID:
20431148
13.

Selection for resistance to oseltamivir in seasonal and pandemic H1N1 influenza and widespread co-circulation of the lineages.

Janies DA, Voronkin IO, Studer J, Hardman J, Alexandrov BB, Treseder TW, Valson C.

Int J Health Geogr. 2010 Feb 24;9:13. doi: 10.1186/1476-072X-9-13.

14.

Genome analysis linking recent European and African influenza (H5N1) viruses.

Salzberg SL, Kingsford C, Cattoli G, Spiro DJ, Janies DA, Aly MM, Brown IH, Couacy-Hymann E, De Mia GM, Dung do H, Guercio A, Joannis T, Maken Ali AS, Osmani A, Padalino I, Saad MD, Savić V, Sengamalay NA, Yingst S, Zaborsky J, Zorman-Rojs O, Ghedin E, Capua I.

Emerg Infect Dis. 2007 May;13(5):713-8.

15.

An XML-based system for synthesis of data from disparate databases.

Kurc T, Janies DA, Johnson AD, Langella S, Oster S, Hastings S, Habib F, Camerlengo T, Ervin D, Catalyurek UV, Saltz JH.

J Am Med Inform Assoc. 2006 May-Jun;13(3):289-301. Epub 2006 Feb 24.

16.

Genetic diversity and recombination of porcine sapoviruses.

Wang QH, Han MG, Funk JA, Bowman G, Janies DA, Saif LJ.

J Clin Microbiol. 2005 Dec;43(12):5963-72.

17.

Molecular phylogeny of coral-reef sea cucumbers (Holothuriidae: Aspidochirotida) based on 16S mitochondrial ribosomal DNA sequence.

Kerr AM, Janies DA, Clouse RM, Samyn Y, Kuszak J, Kim J.

Mar Biotechnol (NY). 2005 Jan-Feb;7(1):53-60. Epub 2004 Dec 30.

PMID:
15997365
18.

Efficiency of parallel direct optimization.

Janies DA, Wheeler WC.

Cladistics. 2001 Mar;17(1 Pt 2):S71-82.

PMID:
12240679
19.

Theory and practice of parallel direct optimization.

Janies DA, Wheeler WC.

EXS. 2002;(92):115-23.

PMID:
11924490
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