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Physical Mapping and Refinement of the Painted Turtle Genome (Chrysemys picta) Inform Amniote Genome Evolution and Challenge Turtle-Bird Chromosomal Conservation.

Badenhorst D, Hillier LW, Literman R, Montiel EE, Radhakrishnan S, Shen Y, Minx P, Janes DE, Warren WC, Edwards SV, Valenzuela N.

Genome Biol Evol. 2015 Jun 24;7(7):2038-50. doi: 10.1093/gbe/evv119.


Molecular evolution of Dmrt1 accompanies change of sex-determining mechanisms in reptilia.

Janes DE, Organ CL, Stiglec R, O'Meally D, Sarre SD, Georges A, Graves JA, Valenzuela N, Literman RA, Rutherford K, Gemmell N, Iverson JB, Tamplin JW, Edwards SV, Ezaz T.

Biol Lett. 2014 Dec;10(12):20140809. doi: 10.1098/rsbl.2014.0809.


Parallel evolution of tetrodotoxin resistance in three voltage-gated sodium channel genes in the garter snake Thamnophis sirtalis.

McGlothlin JW, Chuckalovcak JP, Janes DE, Edwards SV, Feldman CR, Brodie ED Jr, Pfrender ME, Brodie ED 3rd.

Mol Biol Evol. 2014 Nov;31(11):2836-46. doi: 10.1093/molbev/msu237. Epub 2014 Aug 18.


Sex-biased expression of sex-differentiating genes FOXL2 and FGF9 in American alligators, alligator Mississippiensis.

Janes DE, Elsey RM, Langan EM, Valenzuela N, Edwards SV.

Sex Dev. 2013;7(5):253-60. doi: 10.1159/000350787. Epub 2013 May 8.


Triploid plover female provides support for a role of the W chromosome in avian sex determination.

Küpper C, Augustin J, Edwards S, Székely T, Kosztolányi A, Burke T, Janes DE.

Biol Lett. 2012 Oct 23;8(5):787-9. doi: 10.1098/rsbl.2012.0329. Epub 2012 May 30.


Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes.

St John JA, Braun EL, Isberg SR, Miles LG, Chong AY, Gongora J, Dalzell P, Moran C, Bed'hom B, Abzhanov A, Burgess SC, Cooksey AM, Castoe TA, Crawford NG, Densmore LD, Drew JC, Edwards SV, Faircloth BC, Fujita MK, Greenwold MJ, Hoffmann FG, Howard JM, Iguchi T, Janes DE, Khan SY, Kohno S, de Koning AJ, Lance SL, McCarthy FM, McCormack JE, Merchant ME, Peterson DG, Pollock DD, Pourmand N, Raney BJ, Roessler KA, Sanford JR, Sawyer RH, Schmidt CJ, Triplett EW, Tuberville TD, Venegas-Anaya M, Howard JT, Jarvis ED, Guillette LJ Jr, Glenn TC, Green RE, Ray DA.

Genome Biol. 2012 Jan 31;13(1):415. doi: 10.1186/gb-2012-13-1-415.


Developing a community-based genetic nomenclature for anole lizards.

Kusumi K, Kulathinal RJ, Abzhanov A, Boissinot S, Crawford NG, Faircloth BC, Glenn TC, Janes DE, Losos JB, Menke DB, Poe S, Sanger TJ, Schneider CJ, Stapley J, Wade J, Wilson-Rawls J.

BMC Genomics. 2011 Nov 11;12:554. doi: 10.1186/1471-2164-12-554.


The genome of the green anole lizard and a comparative analysis with birds and mammals.

Alföldi J, Di Palma F, Grabherr M, Williams C, Kong L, Mauceli E, Russell P, Lowe CB, Glor RE, Jaffe JD, Ray DA, Boissinot S, Shedlock AM, Botka C, Castoe TA, Colbourne JK, Fujita MK, Moreno RG, ten Hallers BF, Haussler D, Heger A, Heiman D, Janes DE, Johnson J, de Jong PJ, Koriabine MY, Lara M, Novick PA, Organ CL, Peach SE, Poe S, Pollock DD, de Queiroz K, Sanger T, Searle S, Smith JD, Smith Z, Swofford R, Turner-Maier J, Wade J, Young S, Zadissa A, Edwards SV, Glenn TC, Schneider CJ, Losos JB, Lander ES, Breen M, Ponting CP, Lindblad-Toh K.

Nature. 2011 Aug 31;477(7366):587-91. doi: 10.1038/nature10390.


Reptiles and mammals have differentially retained long conserved noncoding sequences from the amniote ancestor.

Janes DE, Chapus C, Gondo Y, Clayton DF, Sinha S, Blatti CA, Organ CL, Fujita MK, Balakrishnan CN, Edwards SV.

Genome Biol Evol. 2011;3:102-13. doi: 10.1093/gbe/evq087. Epub 2010 Dec 23.


Sex chromosome evolution in amniotes: applications for bacterial artificial chromosome libraries.

Janes DE, Valenzuela N, Ezaz T, Amemiya C, Edwards SV.

J Biomed Biotechnol. 2011;2011:132975. doi: 10.1155/2011/132975. Epub 2010 Oct 12. Review.


Genome evolution in Reptilia, the sister group of mammals.

Janes DE, Organ CL, Fujita MK, Shedlock AM, Edwards SV.

Annu Rev Genomics Hum Genet. 2010;11:239-64. doi: 10.1146/annurev-genom-082509-141646. Review.


Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species.

Künstner A, Wolf JB, Backström N, Whitney O, Balakrishnan CN, Day L, Edwards SV, Janes DE, Schlinger BA, Wilson RK, Jarvis ED, Warren WC, Ellegren H.

Mol Ecol. 2010 Mar;19 Suppl 1:266-76. doi: 10.1111/j.1365-294X.2009.04487.x. Erratum in: Mol Ecol. 2011 Jul;20(13):2871.


Variability in sex-determining mechanisms influences genome complexity in reptilia.

Janes DE, Organ CL, Edwards SV.

Cytogenet Genome Res. 2009;127(2-4):242-8. doi: 10.1159/000293283. Epub 2010 Mar 4. Review.


Genotypic sex determination enabled adaptive radiations of extinct marine reptiles.

Organ CL, Janes DE, Meade A, Pagel M.

Nature. 2009 Sep 17;461(7262):389-92. doi: 10.1038/nature08350.


Evolution of sex chromosomes in Sauropsida.

Organ CL, Janes DE.

Integr Comp Biol. 2008 Oct;48(4):512-9. doi: 10.1093/icb/icn041. Epub 2008 May 17.


Characterization, chromosomal location, and genomic neighborhood of a ratite ortholog of a gene with gonadal expression in mammals.

Janes DE, Ezaz T, Graves JA, Edwards SV.

Integr Comp Biol. 2008 Oct;48(4):505-11. doi: 10.1093/icb/icn024. Epub 2008 Apr 28.


New resources inform study of genome size, content, and organization in nonavian reptiles.

Janes DE, Organ C, Valenzuela N.

Integr Comp Biol. 2008 Oct;48(4):447-53. doi: 10.1093/icb/icn010. Epub 2008 Mar 16.


Recombination and nucleotide diversity in the sex chromosomal pseudoautosomal region of the emu, Dromaius novaehollandiae.

Janes DE, Ezaz T, Marshall Graves JA, Edwards SV.

J Hered. 2009 Mar-Apr;100(2):125-36. doi: 10.1093/jhered/esn065. Epub 2008 Sep 4.


Amniote phylogenomics: testing evolutionary hypotheses with BAC library scanning and targeted clone analysis of large-scale DNA sequences from reptiles.

Shedlock AM, Janes DE, Edwards SV.

Methods Mol Biol. 2008;422:91-117. doi: 10.1007/978-1-59745-581-7_7.


Physical aspects of microwaves in relation to man and experimental animals. General discussion.

Osepchuk JM, Gandhi OP, Janes DE Jr.

Bull N Y Acad Med. 1979 Dec;55(11):1042-6. No abstract available.

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