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Pathogens in Urine from a Female Patient with Overactive Bladder Syndrome Detected by Culture-independent High Throughput Sequencing: A Case Report.

Siddiqui H, Lagesen K, Nederbragt AJ, Eri LM, Jeansson SL, Jakobsen KS.

Open Microbiol J. 2014 Dec 31;8:148-53. doi: 10.2174/1874285801408010148. eCollection 2014.


From gene trees to a dated allopolyploid network: insights from the angiosperm genus Viola (Violaceae).

Marcussen T, Heier L, Brysting AK, Oxelman B, Jakobsen KS.

Syst Biol. 2015 Jan;64(1):84-101. doi: 10.1093/sysbio/syu071. Epub 2014 Oct 3.


Use of high throughput sequencing and light microscopy show contrasting results in a study of phytoplankton occurrence in a freshwater environment.

Xiao X, Sogge H, Lagesen K, Tooming-Klunderud A, Jakobsen KS, Rohrlack T.

PLoS One. 2014 Aug 29;9(8):e106510. doi: 10.1371/journal.pone.0106510. eCollection 2014.


Ancient hybridizations among the ancestral genomes of bread wheat.

Marcussen T, Sandve SR, Heier L, Spannagl M, Pfeifer M; International Wheat Genome Sequencing Consortium,, Jakobsen KS, Wulff BB, Steuernagel B, Mayer KF, Olsen OA.

Science. 2014 Jul 18;345(6194):1250092. doi: 10.1126/science.1250092.


The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing.

Keeling PJ, Burki F, Wilcox HM, Allam B, Allen EE, Amaral-Zettler LA, Armbrust EV, Archibald JM, Bharti AK, Bell CJ, Beszteri B, Bidle KD, Cameron CT, Campbell L, Caron DA, Cattolico RA, Collier JL, Coyne K, Davy SK, Deschamps P, Dyhrman ST, Edvardsen B, Gates RD, Gobler CJ, Greenwood SJ, Guida SM, Jacobi JL, Jakobsen KS, James ER, Jenkins B, John U, Johnson MD, Juhl AR, Kamp A, Katz LA, Kiene R, Kudryavtsev A, Leander BS, Lin S, Lovejoy C, Lynn D, Marchetti A, McManus G, Nedelcu AM, Menden-Deuer S, Miceli C, Mock T, Montresor M, Moran MA, Murray S, Nadathur G, Nagai S, Ngam PB, Palenik B, Pawlowski J, Petroni G, Piganeau G, Posewitz MC, Rengefors K, Romano G, Rumpho ME, Rynearson T, Schilling KB, Schroeder DC, Simpson AG, Slamovits CH, Smith DR, Smith GJ, Smith SR, Sosik HM, Stief P, Theriot E, Twary SN, Umale PE, Vaulot D, Wawrik B, Wheeler GL, Wilson WH, Xu Y, Zingone A, Worden AZ.

PLoS Biol. 2014 Jun 24;12(6):e1001889. doi: 10.1371/journal.pbio.1001889. eCollection 2014 Jun. No abstract available.


Palindromic sequence artifacts generated during next generation sequencing library preparation from historic and ancient DNA.

Star B, Nederbragt AJ, Hansen MH, Skage M, Gilfillan GD, Bradbury IR, Pampoulie C, Stenseth NC, Jakobsen KS, Jentoft S.

PLoS One. 2014 Mar 7;9(3):e89676. doi: 10.1371/journal.pone.0089676. eCollection 2014.


Linking geology and microbiology: inactive pockmarks affect sediment microbial community structure.

Haverkamp TH, Hammer Ø, Jakobsen KS.

PLoS One. 2014 Jan 24;9(1):e85990. doi: 10.1371/journal.pone.0085990. eCollection 2014.


The chloroplast genome of the diatom Seminavis robusta: new features introduced through multiple mechanisms of horizontal gene transfer.

Brembu T, Winge P, Tooming-Klunderud A, Nederbragt AJ, Jakobsen KS, Bones AM.

Mar Genomics. 2014 Aug;16:17-27. doi: 10.1016/j.margen.2013.12.002. Epub 2013 Dec 21.


Next generation sequencing shows high variation of the intestinal microbial species composition in Atlantic cod caught at a single location.

Star B, Haverkamp TH, Jentoft S, Jakobsen KS.

BMC Microbiol. 2013 Nov 9;13:248. doi: 10.1186/1471-2180-13-248.


Unraveling the evolution of the Atlantic cod's (Gadus morhua L.) alternative immune strategy.

Malmstrøm M, Jentoft S, Gregers TF, Jakobsen KS.

PLoS One. 2013 Sep 3;8(9):e74004. doi: 10.1371/journal.pone.0074004. eCollection 2013. Erratum in: PLoS One. 2013;8(10). doi:10.1371/annotation/18b70612-fd3d-46ce-a04b-652d18c82d5b.


From green to red: horizontal gene transfer of the phycoerythrin gene cluster between Planktothrix strains.

Tooming-Klunderud A, Sogge H, Rounge TB, Nederbragt AJ, Lagesen K, Glöckner G, Hayes PK, Rohrlack T, Jakobsen KS.

Appl Environ Microbiol. 2013 Nov;79(21):6803-12. doi: 10.1128/AEM.01455-13. Epub 2013 Aug 30.


Evolution and distribution of saxitoxin biosynthesis in dinoflagellates.

Orr RJ, Stüken A, Murray SA, Jakobsen KS.

Mar Drugs. 2013 Aug 8;11(8):2814-28. doi: 10.3390/md11082814. Review.


Evolutionary acquisition and loss of saxitoxin biosynthesis in dinoflagellates: the second "core" gene, sxtG.

Orr RJ, Stüken A, Murray SA, Jakobsen KS.

Appl Environ Microbiol. 2013 Apr;79(7):2128-36. doi: 10.1128/AEM.03279-12. Epub 2013 Jan 18.


[Carcinoids and 68Ga-DOTANOC PET/CT].

Borghammer P, Arveschoug AK, Hjorthaug K, Kindt SE, Jakobsen KS.

Ugeskr Laeger. 2013 Jan 7;175(1-2):58. Danish. No abstract available.


When naked became armored: an eight-gene phylogeny reveals monophyletic origin of theca in dinoflagellates.

Orr RJ, Murray SA, Stüken A, Rhodes L, Jakobsen KS.

PLoS One. 2012;7(11):e50004. doi: 10.1371/journal.pone.0050004. Epub 2012 Nov 19.


Gene flow, recombination, and selection in cyanobacteria: population structure of geographically related Planktothrix freshwater strains.

Sogge H, Rohrlack T, Rounge TB, Sønstebø JH, Tooming-Klunderud A, Kristensen T, Jakobsen KS.

Appl Environ Microbiol. 2013 Jan;79(2):508-15. doi: 10.1128/AEM.02417-12. Epub 2012 Nov 2.


Estimation of metagenome size and structure in an experimental soil microbiota from low coverage next-generation sequence data.

Frisli T, Haverkamp TH, Jakobsen KS, Stenseth NC, Rudi K.

J Appl Microbiol. 2013 Jan;114(1):141-51. doi: 10.1111/jam.12035. Epub 2012 Nov 1.


Alterations of microbiota in urine from women with interstitial cystitis.

Siddiqui H, Lagesen K, Nederbragt AJ, Jeansson SL, Jakobsen KS.

BMC Microbiol. 2012 Sep 13;12:205. doi: 10.1186/1471-2180-12-205.


Metagenomic and geochemical characterization of pockmarked sediments overlaying the Troll petroleum reservoir in the North Sea.

Håvelsrud OE, Haverkamp TH, Kristensen T, Jakobsen KS, Rike AG.

BMC Microbiol. 2012 Sep 11;12:203. doi: 10.1186/1471-2180-12-203.


Genome fragmentation is not confined to the peridinin plastid in dinoflagellates.

Espelund M, Minge MA, Gabrielsen TM, Nederbragt AJ, Shalchian-Tabrizi K, Otis C, Turmel M, Lemieux C, Jakobsen KS.

PLoS One. 2012;7(6):e38809. doi: 10.1371/journal.pone.0038809. Epub 2012 Jun 18.

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