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Results: 1 to 20 of 96

1.

Global Transcriptional Profiling Reveals Distinct Functions of Thymic Stromal Subsets and Age-Related Changes during Thymic Involution.

Ki S, Park D, Selden HJ, Seita J, Chung H, Kim J, Iyer VR, Ehrlich LI.

Cell Rep. 2014 Oct 9;9(1):402-15. doi: 10.1016/j.celrep.2014.08.070. Epub 2014 Oct 2.

PMID:
25284794
[PubMed - in process]
Free Article
2.

Development of a data set of national cardiovascular deaths in the young.

Vetter VL, Dugan NP, Haley DM, Covington TM, Dykstra H, Overpeck M, Iyer VR, Shults J.

Am Heart J. 2014 Oct;168(4):568-576.e3. doi: 10.1016/j.ahj.2014.06.015. Epub 2014 Jun 30.

PMID:
25262268
[PubMed - in process]
3.

Chromatin accessibility mapping identifies mediators of basal transcription and retinoid-induced repression of OTX2 in medulloblastoma.

Wortham M, Guo C, Zhang M, Song L, Lee BK, Iyer VR, Furey TS, Crawford GE, Yan H, He Y.

PLoS One. 2014 Sep 8;9(9):e107156. doi: 10.1371/journal.pone.0107156. eCollection 2014.

PMID:
25198066
[PubMed - in process]
Free PMC Article
4.

Overexpression of junctophilin-2 does not enhance baseline function but attenuates heart failure development after cardiac stress.

Guo A, Zhang X, Iyer VR, Chen B, Zhang C, Kutschke WJ, Weiss RM, Franzini-Armstrong C, Song LS.

Proc Natl Acad Sci U S A. 2014 Aug 19;111(33):12240-5. doi: 10.1073/pnas.1412729111. Epub 2014 Aug 4.

PMID:
25092313
[PubMed - in process]
5.

Optic nerve glioma: an update.

Nair AG, Pathak RS, Iyer VR, Gandhi RA.

Int Ophthalmol. 2014 Aug;34(4):999-1005. doi: 10.1007/s10792-014-9942-8. Epub 2014 Apr 16.

PMID:
24736941
[PubMed - in process]
6.

Prevalence of electrocardiogram use in infants with apparent life-threatening events: a multicenter database study.

Elias MD, Iyer VR, Cohen MS.

Pediatr Emerg Care. 2014 Apr;30(4):236-9. doi: 10.1097/PEC.0000000000000103.

PMID:
24651217
[PubMed - in process]
7.

An eQTL analysis of the human glioblastoma multiforme genome.

Shpak M, Hall AW, Goldberg MM, Derryberry DZ, Ni Y, Iyer VR, Cowperthwaite MC.

Genomics. 2014 Apr;103(4):252-63. doi: 10.1016/j.ygeno.2014.02.005. Epub 2014 Mar 4.

PMID:
24607568
[PubMed - in process]
8.

Dendritic cell fate is determined by BCL11A.

Ippolito GC, Dekker JD, Wang YH, Lee BK, Shaffer AL 3rd, Lin J, Wall JK, Lee BS, Staudt LM, Liu YJ, Iyer VR, Tucker HO.

Proc Natl Acad Sci U S A. 2014 Mar 18;111(11):E998-1006. doi: 10.1073/pnas.1319228111. Epub 2014 Mar 3.

PMID:
24591644
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Bright/Arid3A acts as a barrier to somatic cell reprogramming through direct regulation of Oct4, Sox2, and Nanog.

Popowski M, Templeton TD, Lee BK, Rhee C, Li H, Miner C, Dekker JD, Orlanski S, Bergman Y, Iyer VR, Webb CF, Tucker H.

Stem Cell Reports. 2014 Jan 14;2(1):26-35. doi: 10.1016/j.stemcr.2013.12.002. eCollection 2014 Jan 14.

PMID:
24511468
[PubMed - in process]
Free PMC Article
10.

Simultaneous mapping of transcript ends at single-nucleotide resolution and identification of widespread promoter-associated non-coding RNA governed by TATA elements.

Park D, Morris AR, Battenhouse A, Iyer VR.

Nucleic Acids Res. 2014 Apr;42(6):3736-49. doi: 10.1093/nar/gkt1366. Epub 2014 Jan 10.

PMID:
24413663
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Widespread misinterpretable ChIP-seq bias in yeast.

Park D, Lee Y, Bhupindersingh G, Iyer VR.

PLoS One. 2013 Dec 9;8(12):e83506. doi: 10.1371/journal.pone.0083506. eCollection 2013.

PMID:
24349523
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Abnormal calcium cycling and cardiac arrhythmias associated with the human Ser96Ala genetic variant of histidine-rich calcium-binding protein.

Singh VP, Rubinstein J, Arvanitis DA, Ren X, Gao X, Haghighi K, Gilbert M, Iyer VR, Kim do H, Cho C, Jones K, Lorenz JN, Armstrong CF, Wang HS, Gyorke S, Kranias EG.

J Am Heart Assoc. 2013 Oct 14;2(5):e000460. doi: 10.1161/JAHA.113.000460.

PMID:
24125847
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Arrhythmogenic right ventricular cardiomyopathy/dysplasia (ARVC/D).

Iyer VR, Chin AJ.

Am J Med Genet C Semin Med Genet. 2013 Aug;163C(3):185-97. doi: 10.1002/ajmg.c.31368. Epub 2013 Jul 3. Review.

PMID:
23824749
[PubMed - in process]
14.

Thermostable group II intron reverse transcriptase fusion proteins and their use in cDNA synthesis and next-generation RNA sequencing.

Mohr S, Ghanem E, Smith W, Sheeter D, Qin Y, King O, Polioudakis D, Iyer VR, Hunicke-Smith S, Swamy S, Kuersten S, Lambowitz AM.

RNA. 2013 Jul;19(7):958-70. doi: 10.1261/rna.039743.113. Epub 2013 May 22.

PMID:
23697550
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

The BCL11A transcription factor directly activates RAG gene expression and V(D)J recombination.

Lee BS, Dekker JD, Lee BK, Iyer VR, Sleckman BP, Shaffer AL 3rd, Ippolito GC, Tucker PW.

Mol Cell Biol. 2013 May;33(9):1768-81. doi: 10.1128/MCB.00987-12. Epub 2013 Feb 25.

PMID:
23438597
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

A Myc-microRNA network promotes exit from quiescence by suppressing the interferon response and cell-cycle arrest genes.

Polioudakis D, Bhinge AA, Killion PJ, Lee BK, Abell NS, Iyer VR.

Nucleic Acids Res. 2013 Feb 1;41(4):2239-54. doi: 10.1093/nar/gks1452. Epub 2013 Jan 8.

PMID:
23303785
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia.

Landt SG, Marinov GK, Kundaje A, Kheradpour P, Pauli F, Batzoglou S, Bernstein BE, Bickel P, Brown JB, Cayting P, Chen Y, DeSalvo G, Epstein C, Fisher-Aylor KI, Euskirchen G, Gerstein M, Gertz J, Hartemink AJ, Hoffman MM, Iyer VR, Jung YL, Karmakar S, Kellis M, Kharchenko PV, Li Q, Liu T, Liu XS, Ma L, Milosavljevic A, Myers RM, Park PJ, Pazin MJ, Perry MD, Raha D, Reddy TE, Rozowsky J, Shoresh N, Sidow A, Slattery M, Stamatoyannopoulos JA, Tolstorukov MY, White KP, Xi S, Farnham PJ, Lieb JD, Wold BJ, Snyder M.

Genome Res. 2012 Sep;22(9):1813-31. doi: 10.1101/gr.136184.111.

PMID:
22955991
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

The accessible chromatin landscape of the human genome.

Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, Sheffield NC, Stergachis AB, Wang H, Vernot B, Garg K, John S, Sandstrom R, Bates D, Boatman L, Canfield TK, Diegel M, Dunn D, Ebersol AK, Frum T, Giste E, Johnson AK, Johnson EM, Kutyavin T, Lajoie B, Lee BK, Lee K, London D, Lotakis D, Neph S, Neri F, Nguyen ED, Qu H, Reynolds AP, Roach V, Safi A, Sanchez ME, Sanyal A, Shafer A, Simon JM, Song L, Vong S, Weaver M, Yan Y, Zhang Z, Zhang Z, Lenhard B, Tewari M, Dorschner MO, Hansen RS, Navas PA, Stamatoyannopoulos G, Iyer VR, Lieb JD, Sunyaev SR, Akey JM, Sabo PJ, Kaul R, Furey TS, Dekker J, Crawford GE, Stamatoyannopoulos JA.

Nature. 2012 Sep 6;489(7414):75-82. doi: 10.1038/nature11232.

PMID:
22955617
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Genome-wide studies of CCCTC-binding factor (CTCF) and cohesin provide insight into chromatin structure and regulation.

Lee BK, Iyer VR.

J Biol Chem. 2012 Sep 7;287(37):30906-13. doi: 10.1074/jbc.R111.324962. Epub 2012 Sep 5. Review.

PMID:
22952237
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Simultaneous SNP identification and assessment of allele-specific bias from ChIP-seq data.

Ni Y, Hall AW, Battenhouse A, Iyer VR.

BMC Genet. 2012 Sep 5;13:46. doi: 10.1186/1471-2156-13-46.

PMID:
22950704
[PubMed - indexed for MEDLINE]
Free PMC Article

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