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Items: 1 to 20 of 146

1.

Membrane-Spanning Sequences in Endoplasmic Reticulum Proteins Promote Phospholipid Flip-Flop.

Nakao H, Ikeda K, Ishihama Y, Nakano M.

Biophys J. 2016 Jun 21;110(12):2689-97. doi: 10.1016/j.bpj.2016.05.023.

PMID:
27332127
2.

Large-scale profiling of protein kinases for cellular signaling studies by mass spectrometry and other techniques.

Sugiyama N, Ishihama Y.

J Pharm Biomed Anal. 2016 May 27. pii: S0731-7085(16)30294-1. doi: 10.1016/j.jpba.2016.05.046. [Epub ahead of print]

PMID:
27301379
3.

Comprehensive identification of translation start sites by tetracycline-inhibited ribosome profiling.

Nakahigashi K, Takai Y, Kimura M, Abe N, Nakayashiki T, Shiwa Y, Yoshikawa H, Wanner BL, Ishihama Y, Mori H.

DNA Res. 2016 Jun;23(3):193-201. doi: 10.1093/dnares/dsw008. Epub 2016 Mar 23.

4.

Uncovering Phosphorylation-Based Specificities through Functional Interaction Networks.

Wagih O, Sugiyama N, Ishihama Y, Beltrao P.

Mol Cell Proteomics. 2016 Jan;15(1):236-45. doi: 10.1074/mcp.M115.052357. Epub 2015 Nov 16.

PMID:
26572964
5.

A multi-omic analysis of human naïve CD4+ T cells.

Mitchell CJ, Getnet D, Kim MS, Manda SS, Kumar P, Huang TC, Pinto SM, Nirujogi RS, Iwasaki M, Shaw PG, Wu X, Zhong J, Chaerkady R, Marimuthu A, Muthusamy B, Sahasrabuddhe NA, Raju R, Bowman C, Danilova L, Cutler J, Kelkar DS, Drake CG, Prasad TS, Marchionni L, Murakami PN, Scott AF, Shi L, Thierry-Mieg J, Thierry-Mieg D, Irizarry R, Cope L, Ishihama Y, Wang C, Gowda H, Pandey A.

BMC Syst Biol. 2015 Nov 6;9:75. doi: 10.1186/s12918-015-0225-4.

6.

Phosphoproteomics Identifies CK2 as a Negative Regulator of Beige Adipocyte Thermogenesis and Energy Expenditure.

Shinoda K, Ohyama K, Hasegawa Y, Chang HY, Ogura M, Sato A, Hong H, Hosono T, Sharp LZ, Scheel DW, Graham M, Ishihama Y, Kajimura S.

Cell Metab. 2015 Dec 1;22(6):997-1008. doi: 10.1016/j.cmet.2015.09.029. Epub 2015 Nov 8.

PMID:
26525534
7.

Temporal Phosphoproteome Dynamics Induced by an ATP Synthase Inhibitor Citreoviridin.

Hu CW, Hsu CL, Wang YC, Ishihama Y, Ku WC, Huang HC, Juan HF.

Mol Cell Proteomics. 2015 Dec;14(12):3284-98. doi: 10.1074/mcp.M115.051383. Epub 2015 Oct 26.

PMID:
26503892
8.

Extended Coverage of Singly and Multiply Phosphorylated Peptides from a Single Titanium Dioxide Microcolumn.

Wakabayashi M, Kyono Y, Sugiyama N, Ishihama Y.

Anal Chem. 2015 Oct 20;87(20):10213-21. doi: 10.1021/acs.analchem.5b01216. Epub 2015 Oct 6.

PMID:
26402220
9.

Systematic profiling of the bacterial phosphoproteome reveals bacterium-specific features of phosphorylation.

Lin MH, Sugiyama N, Ishihama Y.

Sci Signal. 2015 Sep 15;8(394):rs10. doi: 10.1126/scisignal.aaa3117.

PMID:
26373674
10.

Correction: LATS1 and LATS2 phosphorylate CDC26 to modulate assembly of the tetratricopeptide repeat subcomplex of APC/C.

Masuda K, Chiyoda T, Sugiyama N, Segura-Cabrera A, Kabe Y, Ueki A, Banno K, Suematsu M, Aoki D, Ishihama Y, Saya H, Kuninaka S.

PLoS One. 2015 Apr 10;10(4):e0125308. doi: 10.1371/journal.pone.0125308. eCollection 2015. No abstract available.

11.

Feasibility of label-free phosphoproteomics and application to base-line signaling of colorectal cancer cell lines.

Piersma SR, Knol JC, de Reus I, Labots M, Sampadi BK, Pham TV, Ishihama Y, Verheul HM, Jimenez CR.

J Proteomics. 2015 Sep 8;127(Pt B):247-58. doi: 10.1016/j.jprot.2015.03.019. Epub 2015 Apr 1.

PMID:
25841592
12.

Large-scale determination of absolute phosphorylation stoichiometries in human cells by motif-targeting quantitative proteomics.

Tsai CF, Wang YT, Yen HY, Tsou CC, Ku WC, Lin PY, Chen HY, Nesvizhskii AI, Ishihama Y, Chen YJ.

Nat Commun. 2015 Mar 27;6:6622. doi: 10.1038/ncomms7622.

13.

LATS1 and LATS2 phosphorylate CDC26 to modulate assembly of the tetratricopeptide repeat subcomplex of APC/C.

Masuda K, Chiyoda T, Sugiyama N, Segura-Cabrera A, Kabe Y, Ueki A, Banno K, Suematsu M, Aoki D, Ishihama Y, Saya H, Kuninaka S.

PLoS One. 2015 Feb 27;10(2):e0118662. doi: 10.1371/journal.pone.0118662. eCollection 2015. Erratum in: PLoS One. 2015;10(4):e0125308. Banno, Koji [corrected to Banno, Kouji].

14.

PCTK1 regulates integrin-dependent spindle orientation via protein kinase A regulatory subunit KAP0 and myosin X.

Iwano S, Satou A, Matsumura S, Sugiyama N, Ishihama Y, Toyoshima F.

Mol Cell Biol. 2015 Apr;35(7):1197-208. doi: 10.1128/MCB.01017-14. Epub 2015 Jan 20.

15.

Pregnenolone functions in centriole cohesion during mitosis.

Hamasaki M, Matsumura S, Satou A, Takahashi C, Oda Y, Higashiura C, Ishihama Y, Toyoshima F.

Chem Biol. 2014 Dec 18;21(12):1707-21. doi: 10.1016/j.chembiol.2014.11.005.

16.

Phosphorylation of mitochondrial polyubiquitin by PINK1 promotes Parkin mitochondrial tethering.

Shiba-Fukushima K, Arano T, Matsumoto G, Inoshita T, Yoshida S, Ishihama Y, Ryu KY, Nukina N, Hattori N, Imai Y.

PLoS Genet. 2014 Dec 4;10(12):e1004861. doi: 10.1371/journal.pgen.1004861. eCollection 2014 Dec.

17.

pH-dependent promotion of phospholipid flip-flop by the KcsA potassium channel.

Nakao H, Ikeda K, Iwamoto M, Shimizu H, Oiki S, Ishihama Y, Nakano M.

Biochim Biophys Acta. 2015 Jan;1848(1 Pt A):145-50.

18.

Application of partially fluorinated carboxylic acids as ion-pairing reagents in LC/ESI-MS.

Yamamoto E, Ishihama Y, Asakawa N.

Talanta. 2014 Sep;127:219-24. doi: 10.1016/j.talanta.2014.03.060. Epub 2014 Apr 19.

PMID:
24913879
19.

Large-scale identification of phosphorylation sites for profiling protein kinase selectivity.

Imamura H, Sugiyama N, Wakabayashi M, Ishihama Y.

J Proteome Res. 2014 Jul 3;13(7):3410-9. doi: 10.1021/pr500319y. Epub 2014 Jun 4.

PMID:
24869485
20.

Facile and effective pretreatment using stop and go extraction tips for LC-MS/MS analysis of trace amounts of DNA adducts.

Murakami H, Kawamura R, Sakakibara T, Esaka Y, Ishihama Y, Uno B.

Anal Sci. 2014;30(4):519-22.

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