Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 73

1.

Advancing the microbiome research community.

Huttenhower C, Knight R, Brown CT, Caporaso JG, Clemente JC, Gevers D, Franzosa EA, Kelley ST, Knights D, Ley RE, Mahurkar A, Ravel J; Scientists for Advancement of Microbiome Research, White O.

Cell. 2014 Oct 9;159(2):227-30. doi: 10.1016/j.cell.2014.09.022.

PMID:
25303518
[PubMed - in process]
Free PMC Article
2.

Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature.

Haberman Y, Tickle TL, Dexheimer PJ, Kim MO, Tang D, Karns R, Baldassano RN, Noe JD, Rosh J, Markowitz J, Heyman MB, Griffiths AM, Crandall WV, Mack DR, Baker SS, Huttenhower C, Keljo DJ, Hyams JS, Kugathasan S, Walters TD, Aronow B, Xavier RJ, Gevers D, Denson LA.

J Clin Invest. 2014 Aug 1;124(8):3617-33. doi: 10.1172/JCI75436. Epub 2014 Jul 8.

PMID:
25003194
[PubMed - in process]
Free PMC Article
3.

Cross-study validation for the assessment of prediction algorithms.

Bernau C, Riester M, Boulesteix AL, Parmigiani G, Huttenhower C, Waldron L, Trippa L.

Bioinformatics. 2014 Jun 15;30(12):i105-12. doi: 10.1093/bioinformatics/btu279.

PMID:
24931973
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Relating the metatranscriptome and metagenome of the human gut.

Franzosa EA, Morgan XC, Segata N, Waldron L, Reyes J, Earl AM, Giannoukos G, Boylan MR, Ciulla D, Gevers D, Izard J, Garrett WS, Chan AT, Huttenhower C.

Proc Natl Acad Sci U S A. 2014 Jun 3;111(22):E2329-38. doi: 10.1073/pnas.1319284111. Epub 2014 May 19.

PMID:
24843156
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission.

Rooks MG, Veiga P, Wardwell-Scott LH, Tickle T, Segata N, Michaud M, Gallini CA, Beal C, van Hylckama-Vlieg JE, Ballal SA, Morgan XC, Glickman JN, Gevers D, Huttenhower C, Garrett WS.

ISME J. 2014 Jul;8(7):1403-17. doi: 10.1038/ismej.2014.3. Epub 2014 Feb 6.

PMID:
24500617
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Integrative analysis of the microbiome and metabolome of the human intestinal mucosal surface reveals exquisite inter-relationships.

McHardy IH, Goudarzi M, Tong M, Ruegger PM, Schwager E, Weger JR, Graeber TG, Sonnenburg JL, Horvath S, Huttenhower C, McGovern DP, Fornace AJ Jr, Borneman J, Braun J.

Microbiome. 2013 Jun 5;1(1):17. doi: 10.1186/2049-2618-1-17.

PMID:
24450808
[PubMed]
Free PMC Article
7.

Early microbial and metabolomic signatures predict later onset of necrotizing enterocolitis in preterm infants.

Morrow AL, Lagomarcino AJ, Schibler KR, Taft DH, Yu Z, Wang B, Altaye M, Wagner M, Gevers D, Ward DV, Kennedy MA, Huttenhower C, Newburg DS.

Microbiome. 2013 Apr 16;1(1):13. doi: 10.1186/2049-2618-1-13.

PMID:
24450576
[PubMed]
Free PMC Article
8.

Inferring developmental stage composition from gene expression in human malaria.

Joice R, Narasimhan V, Montgomery J, Sidhu AB, Oh K, Meyer E, Pierre-Louis W, Seydel K, Milner D, Williamson K, Wiegand R, Ndiaye D, Daily J, Wirth D, Taylor T, Huttenhower C, Marti M.

PLoS Comput Biol. 2013;9(12):e1003392. doi: 10.1371/journal.pcbi.1003392. Epub 2013 Dec 12.

PMID:
24348235
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Tryptophan biosynthesis protects mycobacteria from CD4 T-cell-mediated killing.

Zhang YJ, Reddy MC, Ioerger TR, Rothchild AC, Dartois V, Schuster BM, Trauner A, Wallis D, Galaviz S, Huttenhower C, Sacchettini JC, Behar SM, Rubin EJ.

Cell. 2013 Dec 5;155(6):1296-308. doi: 10.1016/j.cell.2013.10.045.

PMID:
24315099
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

MetaRef: a pan-genomic database for comparative and community microbial genomics.

Huang K, Brady A, Mahurkar A, White O, Gevers D, Huttenhower C, Segata N.

Nucleic Acids Res. 2014 Jan;42(Database issue):D617-24. doi: 10.1093/nar/gkt1078. Epub 2013 Nov 6.

PMID:
24203705
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Expansion of intestinal Prevotella copri correlates with enhanced susceptibility to arthritis.

Scher JU, Sczesnak A, Longman RS, Segata N, Ubeda C, Bielski C, Rostron T, Cerundolo V, Pamer EG, Abramson SB, Huttenhower C, Littman DR.

Elife. 2013 Nov 5;2:e01202. doi: 10.7554/eLife.01202.

PMID:
24192039
[PubMed - in process]
Free PMC Article
12.

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences.

Langille MG, Zaneveld J, Caporaso JG, McDonald D, Knights D, Reyes JA, Clemente JC, Burkepile DE, Vega Thurber RL, Knight R, Beiko RG, Huttenhower C.

Nat Biotechnol. 2013 Sep;31(9):814-21. doi: 10.1038/nbt.2676. Epub 2013 Aug 25.

PMID:
23975157
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Two-stage microbial community experimental design.

Tickle TL, Segata N, Waldron L, Weingart U, Huttenhower C.

ISME J. 2013 Dec;7(12):2330-9. doi: 10.1038/ismej.2013.139. Epub 2013 Aug 15.

PMID:
23949665
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes.

Segata N, Börnigen D, Morgan XC, Huttenhower C.

Nat Commun. 2013;4:2304. doi: 10.1038/ncomms3304.

PMID:
23942190
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Concordance of gene expression in human protein complexes reveals tissue specificity and pathology.

Börnigen D, Pers TH, Thorrez L, Huttenhower C, Moreau Y, Brunak S.

Nucleic Acids Res. 2013 Oct;41(18):e171. doi: 10.1093/nar/gkt661. Epub 2013 Aug 5.

PMID:
23921638
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Functional profiling of the gut microbiome in disease-associated inflammation.

Börnigen D, Morgan XC, Franzosa EA, Ren B, Xavier RJ, Garrett WS, Huttenhower C.

Genome Med. 2013 Jul 31;5(7):65. doi: 10.1186/gm469. eCollection 2013. Review.

PMID:
23906180
[PubMed]
Free PMC Article
17.

Passing messages between biological networks to refine predicted interactions.

Glass K, Huttenhower C, Quackenbush J, Yuan GC.

PLoS One. 2013 May 31;8(5):e64832. doi: 10.1371/journal.pone.0064832. Print 2013.

PMID:
23741402
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Computational meta'omics for microbial community studies.

Segata N, Boernigen D, Tickle TL, Morgan XC, Garrett WS, Huttenhower C.

Mol Syst Biol. 2013 May 14;9:666. doi: 10.1038/msb.2013.22. Review.

PMID:
23670539
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Sixty years of genome biology.

Doolittle WF, Fraser P, Gerstein MB, Graveley BR, Henikoff S, Huttenhower C, Oshlack A, Ponting CP, Rinn JL, Schatz MC, Ule J, Weigel D, Weinstock GM.

Genome Biol. 2013 Apr 25;14(4):113. doi: 10.1186/gb-2013-14-4-113.

PMID:
23651518
[PubMed - in process]
Free PMC Article
20.

A tiered hidden Markov model characterizes multi-scale chromatin states.

Larson JL, Huttenhower C, Quackenbush J, Yuan GC.

Genomics. 2013 Jul;102(1):1-7. doi: 10.1016/j.ygeno.2013.03.009. Epub 2013 Apr 6.

PMID:
23570996
[PubMed - indexed for MEDLINE]
Free PMC Article

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Loading ...
Write to the Help Desk