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Results: 1 to 20 of 41

1.

Developmental exposure to estrogen alters differentiation and epigenetic programming in a human fetal prostate xenograft model.

Saffarini CM, McDonnell-Clark EV, Amin A, Huse SM, Boekelheide K.

PLoS One. 2015 Mar 23;10(3):e0122290. doi: 10.1371/journal.pone.0122290. eCollection 2015.

2.

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences.

Rideout JR, He Y, Navas-Molina JA, Walters WA, Ursell LK, Gibbons SM, Chase J, McDonald D, Gonzalez A, Robbins-Pianka A, Clemente JC, Gilbert JA, Huse SM, Zhou HW, Knight R, Caporaso JG.

PeerJ. 2014 Aug 21;2:e545. doi: 10.7717/peerj.545. eCollection 2014.

3.

Oligotyping analysis of the human oral microbiome.

Eren AM, Borisy GG, Huse SM, Mark Welch JL.

Proc Natl Acad Sci U S A. 2014 Jul 15;111(28):E2875-84. doi: 10.1073/pnas.1409644111. Epub 2014 Jun 25.

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Comparison of brush and biopsy sampling methods of the ileal pouch for assessment of mucosa-associated microbiota of human subjects.

Huse SM, Young VB, Morrison HG, Antonopoulos DA, Kwon J, Dalal S, Arrieta R, Hubert NA, Shen L, Vineis JH, Koval JC, Sogin ML, Chang EB, Raffals LE.

Microbiome. 2014 Feb 14;2(1):5. doi: 10.1186/2049-2618-2-5.

7.

VAMPS: a website for visualization and analysis of microbial population structures.

Huse SM, Mark Welch DB, Voorhis A, Shipunova A, Morrison HG, Eren AM, Sogin ML.

BMC Bioinformatics. 2014 Feb 5;15:41. doi: 10.1186/1471-2105-15-41.

8.

Multiphasic analysis of the temporal development of the distal gut microbiota in patients following ileal pouch anal anastomosis.

Young VB, Raffals LH, Huse SM, Vital M, Dai D, Schloss PD, Brulc JM, Antonopoulos DA, Arrieta RL, Kwon JH, Reddy KG, Hubert NA, Grim SL, Vineis JH, Dalal S, Morrison HG, Eren AM, Meyer F, Schmidt TM, Tiedje JM, Chang EB, Sogin ML.

Microbiome. 2013 Mar 4;1(1):9. doi: 10.1186/2049-2618-1-9.

9.

Differential response to abiraterone acetate and di-n-butyl phthalate in an androgen-sensitive human fetal testis xenograft bioassay.

Spade DJ, Hall SJ, Saffarini CM, Huse SM, McDonnell EV, Boekelheide K.

Toxicol Sci. 2014 Mar;138(1):148-60. doi: 10.1093/toxsci/kft266. Epub 2013 Nov 27.

10.

Shifts in the microbial community composition of Gulf Coast beaches following beach oiling.

Newton RJ, Huse SM, Morrison HG, Peake CS, Sogin ML, McLellan SL.

PLoS One. 2013 Sep 10;8(9):e74265. doi: 10.1371/journal.pone.0074265. eCollection 2013. Erratum in: PLoS One. 2014;9(4):e94671.

11.

Maturation of the developing human fetal prostate in a rodent xenograft model.

Saffarini CM, McDonnell EV, Amin A, Spade DJ, Huse SM, Kostadinov S, Hall SJ, Boekelheide K.

Prostate. 2013 Dec;73(16):1761-75. doi: 10.1002/pros.22713. Epub 2013 Aug 30.

12.

DRISEE overestimates errors in metagenomic sequencing data.

Eren AM, Morrison HG, Huse SM, Sogin ML.

Brief Bioinform. 2014 Sep;15(5):783-7. doi: 10.1093/bib/bbt010. Epub 2013 May 22.

13.

Sewage reflects the distribution of human faecal Lachnospiraceae.

McLellan SL, Newton RJ, Vandewalle JL, Shanks OC, Huse SM, Eren AM, Sogin ML.

Environ Microbiol. 2013 Aug;15(8):2213-27. doi: 10.1111/1462-2920.12092. Epub 2013 Feb 25.

14.

Comparison of the microbial community structures of untreated wastewaters from different geographic locales.

Shanks OC, Newton RJ, Kelty CA, Huse SM, Sogin ML, McLellan SL.

Appl Environ Microbiol. 2013 May;79(9):2906-13. doi: 10.1128/AEM.03448-12. Epub 2013 Feb 22.

15.

Distance-decay relationships partially determine diversity patterns of phyllosphere bacteria on Tamarix trees across the Sonoran Desert [corrected].

Finkel OM, Burch AY, Elad T, Huse SM, Lindow SE, Post AF, Belkin S.

Appl Environ Microbiol. 2012 Sep;78(17):6187-93. doi: 10.1128/AEM.00888-12. Epub 2012 Jun 29. Erratum in: Appl Environ Microbiol. 2012 Nov;78(21):7818.

16.

A core human microbiome as viewed through 16S rRNA sequence clusters.

Huse SM, Ye Y, Zhou Y, Fodor AA.

PLoS One. 2012;7(6):e34242. doi: 10.1371/journal.pone.0034242. Epub 2012 Jun 13.

17.

TaxMan: a server to trim rRNA reference databases and inspect taxonomic coverage.

Brandt BW, Bonder MJ, Huse SM, Zaura E.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W82-7. doi: 10.1093/nar/gks418. Epub 2012 May 22.

18.

Acinetobacter, Aeromonas and Trichococcus populations dominate the microbial community within urban sewer infrastructure.

Vandewalle JL, Goetz GW, Huse SM, Morrison HG, Sogin ML, Hoffmann RG, Yan K, McLellan SL.

Environ Microbiol. 2012 Sep;14(9):2538-52. doi: 10.1111/j.1462-2920.2012.02757.x. Epub 2012 Apr 24.

19.

Global distribution and diversity of marine Verrucomicrobia.

Freitas S, Hatosy S, Fuhrman JA, Huse SM, Welch DB, Sogin ML, Martiny AC.

ISME J. 2012 Aug;6(8):1499-505. doi: 10.1038/ismej.2012.3. Epub 2012 Feb 9.

20.

Ecology of the microbiome of the infected root canal system: a comparison between apical and coronal root segments.

Ozok AR, Persoon IF, Huse SM, Keijser BJ, Wesselink PR, Crielaard W, Zaura E.

Int Endod J. 2012 Jun;45(6):530-41. doi: 10.1111/j.1365-2591.2011.02006.x. Epub 2012 Jan 17.

PMID:
22251411
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