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Vehlow C, Kao DP, Bristow MR, Hunter LE, Weiskopf D, Görg C.

BMC Bioinformatics. 2015 Apr 29;16(1):135. [Epub ahead of print]


KaBOB: ontology-based semantic integration of biomedical databases.

Livingston KM, Bada M, Baumgartner WA Jr, Hunter LE.

BMC Bioinformatics. 2015 Apr 23;16(1):126. [Epub ahead of print]


Training the next generation of quantitative biologists in the era of big data.

Pattin KA, Greene AC, Altman RB, Cohen KB, Wethington E, Görg C, Hunter LE, Muse SV, Radivojac P, Moore JH.

Pac Symp Biocomput. 2015:488-92.


Peax: interactive visual analysis and exploration of complex clinical phenotype and gene expression association.

Hinterberg MA, Kao DP, Bristow MR, Hunter LE, Port JD, Görg C.

Pac Symp Biocomput. 2015:419-30.


A twentieth anniversary tribute to PSB.

Hewett D, Whirl-Carrillo M, Hunter LE, Altman RB, Klein TE.

Pac Symp Biocomput. 2015:1-7.


Prenatal screening for structural congenital heart disease.

Hunter LE, Simpson JM.

Nat Rev Cardiol. 2014 Jun;11(6):323-34. doi: 10.1038/nrcardio.2014.34. Epub 2014 Mar 25. Review.


Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters.

Funk C, Baumgartner W Jr, Garcia B, Roeder C, Bada M, Cohen KB, Hunter LE, Verspoor K.

BMC Bioinformatics. 2014 Feb 26;15:59. doi: 10.1186/1471-2105-15-59.


Building the next generation of quantitative biologists.

Pattin KA, Greene AC, Altman RB, Hunter LE, Ross DA, Foster JA, Moore JH.

Pac Symp Biocomput. 2014:417-21.


Combining heterogenous data for prediction of disease related and pharmacogenes.

Funk CS, Hunter LE, Cohen KB.

Pac Symp Biocomput. 2014:328-39.


Representing annotation compositionality and provenance for the Semantic Web.

Livingston KM, Bada M, Hunter LE, Verspoor K.

J Biomed Semantics. 2013 Nov 22;4:38. doi: 10.1186/2041-1480-4-38. eCollection 2013.


Rocky mountain conference on bioinformatics celebrates 10 years.

Hunter LE.

PLoS Comput Biol. 2013;9(5):e1003076. doi: 10.1371/journal.pcbi.1003076. Epub 2013 May 30. No abstract available.


Chapter 16: text mining for translational bioinformatics.

Cohen KB, Hunter LE.

PLoS Comput Biol. 2013 Apr;9(4):e1003044. doi: 10.1371/journal.pcbi.1003044. Epub 2013 Apr 25.


Molecular profiling reveals prognostically significant subtypes of canine lymphoma.

Frantz AM, Sarver AL, Ito D, Phang TL, Karimpour-Fard A, Scott MC, Valli VE, Lindblad-Toh K, Burgess KE, Husbands BD, Henson MS, Borgatti A, Kisseberth WC, Hunter LE, Breen M, O'Brien TD, Modiano JF.

Vet Pathol. 2013 Jul;50(4):693-703. doi: 10.1177/0300985812465325. Epub 2012 Nov 2.


A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools.

Verspoor K, Cohen KB, Lanfranchi A, Warner C, Johnson HL, Roeder C, Choi JD, Funk C, Malenkiy Y, Eckert M, Xue N, Baumgartner WA Jr, Bada M, Palmer M, Hunter LE.

BMC Bioinformatics. 2012 Aug 17;13:207. doi: 10.1186/1471-2105-13-207.


Reporting actionable research results: shared secrets can save lives.

Hunter LE, Hopfer C, Terry SF, Coors ME.

Sci Transl Med. 2012 Jul 18;4(143):143cm8. doi: 10.1126/scitranslmed.3003958.


Concept annotation in the CRAFT corpus.

Bada M, Eckert M, Evans D, Garcia K, Shipley K, Sitnikov D, Baumgartner WA Jr, Cohen KB, Verspoor K, Blake JA, Hunter LE.

BMC Bioinformatics. 2012 Jul 9;13:161. doi: 10.1186/1471-2105-13-161.


AMIA Board white paper: definition of biomedical informatics and specification of core competencies for graduate education in the discipline.

Kulikowski CA, Shortliffe EH, Currie LM, Elkin PL, Hunter LE, Johnson TR, Kalet IJ, Lenert LA, Musen MA, Ozbolt JG, Smith JW, Tarczy-Hornoch PZ, Williamson JJ.

J Am Med Inform Assoc. 2012 Nov-Dec;19(6):931-8. doi: 10.1136/amiajnl-2012-001053. Epub 2012 Jun 8.


Kidney proteome changes provide evidence for a dynamic metabolism and regional redistribution of plasma proteins during torpor-arousal cycles of hibernation.

Jani A, Orlicky DJ, Karimpour-Fard A, Epperson LE, Russell RL, Hunter LE, Martin SL.

Physiol Genomics. 2012 Jul 15;44(14):717-27. doi: 10.1152/physiolgenomics.00010.2012. Epub 2012 May 29.


Regional differences in subcutaneous adipose tissue gene expression.

Rehrer CW, Karimpour-Fard A, Hernandez TL, Law CK, Stob NR, Hunter LE, Eckel RH.

Obesity (Silver Spring). 2012 Nov;20(11):2168-73. doi: 10.1038/oby.2012.117. Epub 2012 May 4.


Protein carbonylation in a murine model for early alcoholic liver disease.

Galligan JJ, Smathers RL, Fritz KS, Epperson LE, Hunter LE, Petersen DR.

Chem Res Toxicol. 2012 May 21;25(5):1012-21. doi: 10.1021/tx300002q. Epub 2012 May 1.

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