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Results: 1 to 20 of 604

1.

Genome sequence of the Thermotoga thermarum type strain (LA3(T)) from an African solfataric spring.

Göker M, Spring S, Scheuner C, Anderson I, Zeytun A, Nolan M, Lucas S, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, Ivanova N, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Chang YJ, Jeffries CD, Rohde M, Detter JC, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Lapidus A.

Stand Genomic Sci. 2014 May 15;9(3):1105-17. doi: 10.4056/sigs.3016383. eCollection 2014 Jun 15.

PMID:
25197486
[PubMed]
Free PMC Article
2.

Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279(T)), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia.

Göker M, Lu M, Fiebig A, Nolan M, Lapidus A, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, Ivanova N, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Mayilraj S, Rohde M, Detter JC, Bunk B, Spring S, Wirth R, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP.

Stand Genomic Sci. 2014 Mar 15;9(3):1076-88. doi: 10.4056/sigs.5138968. eCollection 2014 Jun 15.

PMID:
25197484
[PubMed]
Free PMC Article
3.

Genomic Encyclopedia of Type Strains, Phase I: The one thousand microbial genomes (KMG-I) project.

Kyrpides NC, Woyke T, Eisen JA, Garrity G, Lilburn TG, Beck BJ, Whitman WB, Hugenholtz P, Klenk HP.

Stand Genomic Sci. 2013 Dec 17;9(3):1278-84. doi: 10.4056/sigs.5068949. eCollection 2014 Jun 15.

PMID:
25197443
[PubMed]
Free PMC Article
4.

Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains.

Kyrpides NC, Hugenholtz P, Eisen JA, Woyke T, Göker M, Parker CT, Amann R, Beck BJ, Chain PS, Chun J, Colwell RR, Danchin A, Dawyndt P, Dedeurwaerdere T, DeLong EF, Detter JC, De Vos P, Donohue TJ, Dong XZ, Ehrlich DS, Fraser C, Gibbs R, Gilbert J, Gilna P, Glöckner FO, Jansson JK, Keasling JD, Knight R, Labeda D, Lapidus A, Lee JS, Li WJ, Ma J, Markowitz V, Moore ER, Morrison M, Meyer F, Nelson KE, Ohkuma M, Ouzounis CA, Pace N, Parkhill J, Qin N, Rossello-Mora R, Sikorski J, Smith D, Sogin M, Stevens R, Stingl U, Suzuki K, Taylor D, Tiedje JM, Tindall B, Wagner M, Weinstock G, Weissenbach J, White O, Wang J, Zhang L, Zhou YG, Field D, Whitman WB, Garrity GM, Klenk HP.

PLoS Biol. 2014 Aug 5;12(8):e1001920. doi: 10.1371/journal.pbio.1001920. eCollection 2014 Aug.

PMID:
25093819
[PubMed - in process]
Free PMC Article
5.

STAMP: statistical analysis of taxonomic and functional profiles.

Parks DH, Tyson GW, Hugenholtz P, Beiko RG.

Bioinformatics. 2014 Jul 23. pii: btu494. [Epub ahead of print]

PMID:
25061070
[PubMed - as supplied by publisher]
6.

Viral tagging reveals discrete populations in Synechococcus viral genome sequence space.

Deng L, Ignacio-Espinoza JC, Gregory AC, Poulos BT, Weitz JS, Hugenholtz P, Sullivan MB.

Nature. 2014 Sep 11;513(7517):242-5. doi: 10.1038/nature13459. Epub 2014 Jul 13.

PMID:
25043051
[PubMed - in process]
7.

Effects of sample treatments on genome recovery via single-cell genomics.

Clingenpeel S, Schwientek P, Hugenholtz P, Woyke T.

ISME J. 2014 Jun 13. doi: 10.1038/ismej.2014.92. [Epub ahead of print]

PMID:
24926860
[PubMed - as supplied by publisher]
8.

Deterministic processes guide long-term synchronised population dynamics in replicate anaerobic digesters.

Vanwonterghem I, Jensen PD, Dennis PG, Hugenholtz P, Rabaey K, Tyson GW.

ISME J. 2014 Apr 17. doi: 10.1038/ismej.2014.50. [Epub ahead of print]

PMID:
24739627
[PubMed - as supplied by publisher]
9.

Genome Sequence of Enterotoxigenic Escherichia coli Strain B2C.

Madhavan TP, Steen JA, Hugenholtz P, Sakellaris H.

Genome Announc. 2014 Apr 10;2(2). pii: e00247-14. doi: 10.1128/genomeA.00247-14.

PMID:
24723709
[PubMed]
Free PMC Article
10.

An expanded genomic representation of the phylum cyanobacteria.

Soo RM, Skennerton CT, Sekiguchi Y, Imelfort M, Paech SJ, Dennis PG, Steen JA, Parks DH, Tyson GW, Hugenholtz P.

Genome Biol Evol. 2014 May;6(5):1031-45. doi: 10.1093/gbe/evu073.

PMID:
24709563
[PubMed - in process]
Free PMC Article
11.

CopyRighter: a rapid tool for improving the accuracy of microbial community profiles through lineage-specific gene copy number correction.

Angly FE, Dennis PG, Skarshewski A, Vanwonterghem I, Hugenholtz P, Tyson GW.

Microbiome. 2014 Apr 7;2:11. doi: 10.1186/2049-2618-2-11. eCollection 2014.

PMID:
24708850
[PubMed]
Free PMC Article
12.

Nutrition, food production and health - an agenda also for cardiologists.

Faergeman O, Hugenholtz PG, Caterina RD.

Eur J Prev Cardiol. 2014 Apr 3. [Epub ahead of print]

PMID:
24699337
[PubMed - as supplied by publisher]
13.

Single clinical isolates from acute uncomplicated urinary tract infections are representative of dominant in situ populations.

Willner D, Low S, Steen JA, George N, Nimmo GR, Schembri MA, Hugenholtz P.

MBio. 2014 Feb 25;5(2):e01064-13. doi: 10.1128/mBio.01064-13.

PMID:
24570371
[PubMed - in process]
Free PMC Article
14.

Discovery of a novel methanogen prevalent in thawing permafrost.

Mondav R, Woodcroft BJ, Kim EH, McCalley CK, Hodgkins SB, Crill PM, Chanton J, Hurst GB, VerBerkmoes NC, Saleska SR, Hugenholtz P, Rich VI, Tyson GW.

Nat Commun. 2014;5:3212. doi: 10.1038/ncomms4212.

PMID:
24526077
[PubMed - in process]
15.

Genome sequence of Frateuria aurantia type strain (Kondô 67(T)), a xanthomonade isolated from Lilium auratium Lindl.

Anderson I, Teshima H, Nolan M, Lapidus A, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, Ivanova N, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Rohde M, Lang E, Detter JC, Göker M, Woyke T, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP.

Stand Genomic Sci. 2013 Oct 2;9(1):83-92. doi: 10.4056/sigs.4338002. eCollection 2013 Oct 16.

PMID:
24501647
[PubMed]
Free PMC Article
16.

Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovibrio velox type strain (Z-9701(T)) and emended description of the genus Thermanaerovibrio.

Palaniappan K, Meier-Kolthoff JP, Teshima H, Nolan M, Lapidus A, Tice H, Del Rio TG, Cheng JF, Han C, Tapia R, Goodwin LA, Pitluck S, Liolios K, Mavromatis K, Pagani I, Ivanova N, Mikhailova N, Pati A, Chen A, Rohde M, Mayilraj S, Spring S, Detter JC, Göker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP, Woyke T.

Stand Genomic Sci. 2013 Oct 2;9(1):57-70. doi: 10.4056/sigs.4237901. eCollection 2013 Oct 16.

PMID:
24501645
[PubMed]
Free PMC Article
17.

Prokaryotic Super Program Advisory Committee DOE Joint Genome Institute, Walnut Creek, CA, March 27, 2013.

Garrity GM, Banfield J, Eisen J, van der Lelie N, McMahon T, Rusch D, Delong E, Moran MA, Currie C, Furhman J, Hallam S, Hugenholtz P, Moran N, Nelson K, Roberts R, Stepanauskas R.

Stand Genomic Sci. 2013 Jul 30;8(3):561-70. doi: 10.4056/sigs.4638348. eCollection 2013 Jul 30.

PMID:
24501639
[PubMed]
Free PMC Article
18.

A new species of Burkholderia isolated from sugarcane roots promotes plant growth.

Paungfoo-Lonhienne C, Lonhienne TG, Yeoh YK, Webb RI, Lakshmanan P, Chan CX, Lim PE, Ragan MA, Schmidt S, Hugenholtz P.

Microb Biotechnol. 2014 Mar;7(2):142-54. doi: 10.1111/1751-7915.12105. Epub 2013 Dec 19.

PMID:
24350979
[PubMed - in process]
Free PMC Article
19.

Dielectrophoresis-based discrimination of bacteria at the strain level based on their surface properties.

Braff WA, Willner D, Hugenholtz P, Rabaey K, Buie CR.

PLoS One. 2013 Oct 16;8(10):e76751. doi: 10.1371/journal.pone.0076751. eCollection 2013.

PMID:
24146923
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

In-solution fluorescence in situ hybridization and fluorescence-activated cell sorting for single cell and population genome recovery.

Haroon MF, Skennerton CT, Steen JA, Lachner N, Hugenholtz P, Tyson GW.

Methods Enzymol. 2013;531:3-19. doi: 10.1016/B978-0-12-407863-5.00001-0.

PMID:
24060113
[PubMed - indexed for MEDLINE]

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