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Results: 18

1.

Metatranscriptome of an anaerobic benzene-degrading, nitrate-reducing enrichment culture reveals involvement of carboxylation in benzene ring activation.

Luo F, Gitiafroz R, Devine CE, Gong Y, Hug LA, Raskin L, Edwards EA.

Appl Environ Microbiol. 2014 Jul;80(14):4095-107. doi: 10.1128/AEM.00717-14. Epub 2014 May 2.

PMID:
24795366
[PubMed - in process]
2.

New insights into Dehalococcoides mccartyi metabolism from a reconstructed metabolic network-based systems-level analysis of D. mccartyi transcriptomes.

Islam MA, Waller AS, Hug LA, Provart NJ, Edwards EA, Mahadevan R.

PLoS One. 2014 Apr 14;9(4):e94808. doi: 10.1371/journal.pone.0094808. eCollection 2014.

PMID:
24733489
[PubMed - in process]
Free PMC Article
3.

Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer.

Wrighton KC, Castelle CJ, Wilkins MJ, Hug LA, Sharon I, Thomas BC, Handley KM, Mullin SW, Nicora CD, Singh A, Lipton MS, Long PE, Williams KH, Banfield JF.

ISME J. 2014 Jul;8(7):1452-63. doi: 10.1038/ismej.2013.249. Epub 2014 Mar 13.

PMID:
24621521
[PubMed - in process]
4.

Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling.

Hug LA, Castelle CJ, Wrighton KC, Thomas BC, Sharon I, Frischkorn KR, Williams KH, Tringe SG, Banfield JF.

Microbiome. 2013 Aug 5;1(1):22. doi: 10.1186/2049-2618-1-22.

PMID:
24450983
[PubMed]
Free PMC Article
5.

Diversity of reductive dehalogenase genes from environmental samples and enrichment cultures identified with degenerate primer PCR screens.

Hug LA, Edwards EA.

Front Microbiol. 2013 Nov 19;4:341. doi: 10.3389/fmicb.2013.00341. eCollection 2013.

PMID:
24312087
[PubMed]
Free PMC Article
6.

Small genomes and sparse metabolisms of sediment-associated bacteria from four candidate phyla.

Kantor RS, Wrighton KC, Handley KM, Sharon I, Hug LA, Castelle CJ, Thomas BC, Banfield JF.

MBio. 2013 Oct 22;4(5):e00708-13. doi: 10.1128/mBio.00708-13.

PMID:
24149512
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria.

Di Rienzi SC, Sharon I, Wrighton KC, Koren O, Hug LA, Thomas BC, Goodrich JK, Bell JT, Spector TD, Banfield JF, Ley RE.

Elife. 2013 Oct 1;2:e01102. doi: 10.7554/eLife.01102.

8.

Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment.

Castelle CJ, Hug LA, Wrighton KC, Thomas BC, Williams KH, Wu D, Tringe SG, Singer SW, Eisen JA, Banfield JF.

Nat Commun. 2013;4:2120. doi: 10.1038/ncomms3120.

PMID:
23979677
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Overview of organohalide-respiring bacteria and a proposal for a classification system for reductive dehalogenases.

Hug LA, Maphosa F, Leys D, Löffler FE, Smidt H, Edwards EA, Adrian L.

Philos Trans R Soc Lond B Biol Sci. 2013 Mar 11;368(1616):20120322. doi: 10.1098/rstb.2012.0322. Print 2013 Apr 19. Review.

PMID:
23479752
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Comparative metagenomics of three Dehalococcoides-containing enrichment cultures: the role of the non-dechlorinating community.

Hug LA, Beiko RG, Rowe AR, Richardson RE, Edwards EA.

BMC Genomics. 2012 Jul 23;13:327. doi: 10.1186/1471-2164-13-327.

PMID:
22823523
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Discovery of a trans-dichloroethene-respiring Dehalogenimonas species in the 1,1,2,2-tetrachloroethane-dechlorinating WBC-2 consortium.

Manchester MJ, Hug LA, Zarek M, Zila A, Edwards EA.

Appl Environ Microbiol. 2012 Aug;78(15):5280-7. doi: 10.1128/AEM.00384-12. Epub 2012 May 25.

PMID:
22635995
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Genomic determinants of organohalide-respiration in Geobacter lovleyi, an unusual member of the Geobacteraceae.

Wagner DD, Hug LA, Hatt JK, Spitzmiller MR, Padilla-Crespo E, Ritalahti KM, Edwards EA, Konstantinidis KT, Löffler FE.

BMC Genomics. 2012 May 22;13:200. doi: 10.1186/1471-2164-13-200.

PMID:
22616984
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Transcriptional analysis of a Dehalococcoides-containing microbial consortium reveals prophage activation.

Waller AS, Hug LA, Mo K, Radford DR, Maxwell KL, Edwards EA.

Appl Environ Microbiol. 2012 Feb;78(4):1178-86. doi: 10.1128/AEM.06416-11. Epub 2011 Dec 16.

PMID:
22179237
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Design and verification of a pangenome microarray oligonucleotide probe set for Dehalococcoides spp.

Hug LA, Salehi M, Nuin P, Tillier ER, Edwards EA.

Appl Environ Microbiol. 2011 Aug;77(15):5361-9. doi: 10.1128/AEM.00063-11. Epub 2011 Jun 10.

PMID:
21666017
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Site-specific mobilization of vinyl chloride respiration islands by a mechanism common in Dehalococcoides.

McMurdie PJ, Hug LA, Edwards EA, Holmes S, Spormann AM.

BMC Genomics. 2011 Jun 2;12:287. doi: 10.1186/1471-2164-12-287.

PMID:
21635780
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Phylogenetic distributions and histories of proteins involved in anaerobic pyruvate metabolism in eukaryotes.

Hug LA, Stechmann A, Roger AJ.

Mol Biol Evol. 2010 Feb;27(2):311-24. doi: 10.1093/molbev/msp237. Epub 2009 Oct 5.

PMID:
19805439
[PubMed - indexed for MEDLINE]
Free Article
17.

The impact of fossils and taxon sampling on ancient molecular dating analyses.

Hug LA, Roger AJ.

Mol Biol Evol. 2007 Aug;24(8):1889-97. Epub 2007 Jun 7.

PMID:
17556757
[PubMed - indexed for MEDLINE]
Free Article
18.

The origin and diversification of eukaryotes: problems with molecular phylogenetics and molecular clock estimation.

Roger AJ, Hug LA.

Philos Trans R Soc Lond B Biol Sci. 2006 Jun 29;361(1470):1039-54. Review.

PMID:
16754613
[PubMed - indexed for MEDLINE]
Free PMC Article

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