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Results: 1 to 20 of 22

1.

Mutational context and diverse clonal development in early and late bladder cancer.

Nordentoft I, Lamy P, Birkenkamp-Demtröder K, Shumansky K, Vang S, Hornshøj H, Juul M, Villesen P, Hedegaard J, Roth A, Thorsen K, Høyer S, Borre M, Reinert T, Fristrup N, Dyrskjøt L, Shah S, Pedersen JS, Orntoft TF.

Cell Rep. 2014 Jun 12;7(5):1649-63. doi: 10.1016/j.celrep.2014.04.038. Epub 2014 May 15.

PMID:
24835989
[PubMed - in process]
Free Article
2.

Pairwise comparisons of ten porcine tissues identify differential transcriptional regulation at the gene, isoform, promoter and transcription start site level.

Farajzadeh L, Hornshøj H, Momeni J, Thomsen B, Larsen K, Hedegaard J, Bendixen C, Madsen LB.

Biochem Biophys Res Commun. 2013 Aug 23;438(2):346-52. doi: 10.1016/j.bbrc.2013.07.074. Epub 2013 Jul 27.

PMID:
23896602
[PubMed - indexed for MEDLINE]
Free Article
3.

A genome-wide association scan in pig identifies novel regions associated with feed efficiency trait.

Sahana G, Kadlecová V, Hornshøj H, Nielsen B, Christensen OF.

J Anim Sci. 2013 Mar;91(3):1041-50. doi: 10.2527/jas.2012-5643. Epub 2013 Jan 7.

PMID:
23296815
[PubMed - indexed for MEDLINE]
Free Article
4.

Analyses of pig genomes provide insight into porcine demography and evolution.

Groenen MA, Archibald AL, Uenishi H, Tuggle CK, Takeuchi Y, Rothschild MF, Rogel-Gaillard C, Park C, Milan D, Megens HJ, Li S, Larkin DM, Kim H, Frantz LA, Caccamo M, Ahn H, Aken BL, Anselmo A, Anthon C, Auvil L, Badaoui B, Beattie CW, Bendixen C, Berman D, Blecha F, Blomberg J, Bolund L, Bosse M, Botti S, Bujie Z, Bystrom M, Capitanu B, Carvalho-Silva D, Chardon P, Chen C, Cheng R, Choi SH, Chow W, Clark RC, Clee C, Crooijmans RP, Dawson HD, Dehais P, De Sapio F, Dibbits B, Drou N, Du ZQ, Eversole K, Fadista J, Fairley S, Faraut T, Faulkner GJ, Fowler KE, Fredholm M, Fritz E, Gilbert JG, Giuffra E, Gorodkin J, Griffin DK, Harrow JL, Hayward A, Howe K, Hu ZL, Humphray SJ, Hunt T, Hornshøj H, Jeon JT, Jern P, Jones M, Jurka J, Kanamori H, Kapetanovic R, Kim J, Kim JH, Kim KW, Kim TH, Larson G, Lee K, Lee KT, Leggett R, Lewin HA, Li Y, Liu W, Loveland JE, Lu Y, Lunney JK, Ma J, Madsen O, Mann K, Matthews L, McLaren S, Morozumi T, Murtaugh MP, Narayan J, Nguyen DT, Ni P, Oh SJ, Onteru S, Panitz F, Park EW, Park HS, Pascal G, Paudel Y, Perez-Enciso M, Ramirez-Gonzalez R, Reecy JM, Rodriguez-Zas S, Rohrer GA, Rund L, Sang Y, Schachtschneider K, Schraiber JG, Schwartz J, Scobie L, Scott C, Searle S, Servin B, Southey BR, Sperber G, Stadler P, Sweedler JV, Tafer H, Thomsen B, Wali R, Wang J, Wang J, White S, Xu X, Yerle M, Zhang G, Zhang J, Zhang J, Zhao S, Rogers J, Churcher C, Schook LB.

Nature. 2012 Nov 15;491(7424):393-8. doi: 10.1038/nature11622.

PMID:
23151582
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Gene expression profiling of porcine skeletal muscle in the early recovery phase following acute physical activity.

Jensen JH, Conley LN, Hedegaard J, Nielsen M, Young JF, Oksbjerg N, Hornshøj H, Bendixen C, Thomsen B.

Exp Physiol. 2012 Jul;97(7):833-48. doi: 10.1113/expphysiol.2011.063727. Epub 2012 Feb 15.

PMID:
22337866
[PubMed - indexed for MEDLINE]
Free Article
6.

Regulation of basal resistance by a powdery mildew-induced cysteine-rich receptor-like protein kinase in barley.

Rayapuram C, Jensen MK, Maiser F, Shanir JV, Hornshøj H, Rung JH, Gregersen PL, Schweizer P, Collinge DB, Lyngkjær MF.

Mol Plant Pathol. 2012 Feb;13(2):135-47. doi: 10.1111/j.1364-3703.2011.00736.x. Epub 2011 Aug 7.

PMID:
21819533
[PubMed - indexed for MEDLINE]
7.

Methods for interpreting lists of affected genes obtained in a DNA microarray experiment.

Hedegaard J, Arce C, Bicciato S, Bonnet A, Buitenhuis B, Collado-Romero M, Conley LN, Sancristobal M, Ferrari F, Garrido JJ, Groenen MA, Hornshøj H, Hulsegge I, Jiang L, Jiménez-Marín A, Kommadath A, Lagarrigue S, Leunissen JA, Liaubet L, Neerincx PB, Nie H, van der Poel J, Prickett D, Ramirez-Boo M, Rebel JM, Robert-Granié C, Skarman A, Smits MA, Sørensen P, Tosser-Klopp G, Watson M.

BMC Proc. 2009 Jul 16;3 Suppl 4:S5.

PMID:
19615118
[PubMed]
Free PMC Article
8.

Using microarrays to identify positional candidate genes for QTL: the case study of ACTH response in pigs.

Jouffe V, Rowe S, Liaubet L, Buitenhuis B, Hornshøj H, Sancristobal M, Mormède P, de Koning DJ.

BMC Proc. 2009 Jul 16;3 Suppl 4:S14. doi: 10.1186/1753-6561-3-S4-S14.

PMID:
19615114
[PubMed]
Free PMC Article
9.

A robust linkage map of the porcine autosomes based on gene-associated SNPs.

Vingborg RK, Gregersen VR, Zhan B, Panitz F, Høj A, Sørensen KK, Madsen LB, Larsen K, Hornshøj H, Wang X, Bendixen C.

BMC Genomics. 2009 Mar 27;10:134. doi: 10.1186/1471-2164-10-134.

PMID:
19327136
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Transcriptomic and proteomic profiling of two porcine tissues using high-throughput technologies.

Hornshøj H, Bendixen E, Conley LN, Andersen PK, Hedegaard J, Panitz F, Bendixen C.

BMC Genomics. 2009 Jan 19;10:30. doi: 10.1186/1471-2164-10-30.

PMID:
19152685
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Gene expression profiles in liver of pigs with extreme high and low levels of androstenone.

Moe M, Lien S, Bendixen C, Hedegaard J, Hornshøj H, Berget I, Meuwissen TH, Grindflek E.

BMC Vet Res. 2008 Aug 6;4:29. doi: 10.1186/1746-6148-4-29.

PMID:
18684314
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Analysis of the real EADGENE data set: multivariate approaches and post analysis (open access publication).

Sørensen P, Bonnet A, Buitenhuis B, Closset R, Déjean S, Delmas C, Duval M, Glass L, Hedegaard J, Hornshøj H, Hulsegge I, Jaffrézic F, Jensen K, Jiang L, de Koning DJ, Lê Cao KA, Nie H, Petzl W, Pool MH, Robert-Granié C, San Cristobal M, Lund MS, van Schothorst EM, Schuberth HJ, Seyfert HM, Tosser-Klopp G, Waddington D, Watson M, Yang W, Zerbe H.

Genet Sel Evol. 2007 Nov-Dec;39(6):651-68. Epub 2007 Dec 6.

PMID:
18053574
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Analysis of the real EADGENE data set: comparison of methods and guidelines for data normalisation and selection of differentially expressed genes (open access publication).

Jaffrézic F, de Koning DJ, Boettcher PJ, Bonnet A, Buitenhuis B, Closset R, Déjean S, Delmas C, Detilleux JC, Dovc P, Duval M, Foulley JL, Hedegaard J, Hornshøj H, Hulsegge I, Janss L, Jensen K, Jiang L, Lavric M, Lê Cao KA, Lund MS, Malinverni R, Marot G, Nie H, Petzl W, Pool MH, Robert-Granié C, San Cristobal M, van Schothorst EM, Schuberth HJ, Sørensen P, Stella A, Tosser-Klopp G, Waddington D, Watson M, Yang W, Zerbe H, Seyfert HM.

Genet Sel Evol. 2007 Nov-Dec;39(6):633-50. Epub 2007 Dec 6.

PMID:
18053573
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The EADGENE Microarray Data Analysis Workshop (open access publication).

de Koning DJ, Jaffrézic F, Lund MS, Watson M, Channing C, Hulsegge I, Pool MH, Buitenhuis B, Hedegaard J, Hornshøj H, Jiang L, Sørensen P, Marot G, Delmas C, Lê Cao KA, San Cristobal M, Baron MD, Malinverni R, Stella A, Brunner RM, Seyfert HM, Jensen K, Mouzaki D, Waddington D, Jiménez-Marín A, Pérez-Alegre M, Pérez-Reinado E, Closset R, Detilleux JC, Dovc P, Lavric M, Nie H, Janss L.

Genet Sel Evol. 2007 Nov-Dec;39(6):621-31. Epub 2007 Dec 6.

PMID:
18053572
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Microarray expression profiles of 20.000 genes across 23 healthy porcine tissues.

Hornshøj H, Conley LN, Hedegaard J, Sørensen P, Panitz F, Bendixen C.

PLoS One. 2007 Nov 21;2(11):e1203.

PMID:
18030337
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation.

Panitz F, Stengaard H, Hornshøj H, Gorodkin J, Hedegaard J, Cirera S, Thomsen B, Madsen LB, Høj A, Vingborg RK, Zahn B, Wang X, Wang X, Wernersson R, Jørgensen CB, Scheibye-Knudsen K, Arvin T, Lumholdt S, Sawera M, Green T, Nielsen BJ, Havgaard JH, Brunak S, Fredholm M, Bendixen C.

Bioinformatics. 2007 Jul 1;23(13):i387-91.

PMID:
17646321
[PubMed - indexed for MEDLINE]
Free Article
17.

Effects of bacterial colonization on the porcine intestinal proteome.

Danielsen M, Hornshøj H, Siggers RH, Jensen BB, van Kessel AG, Bendixen E.

J Proteome Res. 2007 Jul;6(7):2596-604. Epub 2007 Jun 2.

PMID:
17542629
[PubMed - indexed for MEDLINE]
18.

Molecular characterisation of the early response in pigs to experimental infection with Actinobacillus pleuropneumoniae using cDNA microarrays.

Hedegaard J, Skovgaard K, Mortensen S, Sørensen P, Jensen TK, Hornshøj H, Bendixen C, Heegaard PM.

Acta Vet Scand. 2007 Apr 27;49:11.

PMID:
17466061
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags.

Gorodkin J, Cirera S, Hedegaard J, Gilchrist MJ, Panitz F, Jørgensen C, Scheibye-Knudsen K, Arvin T, Lumholdt S, Sawera M, Green T, Nielsen BJ, Havgaard JH, Rosenkilde C, Wang J, Li H, Li R, Liu B, Hu S, Dong W, Li W, Yu J, Wang J, Staefeldt HH, Wernersson R, Madsen LB, Thomsen B, Hornshøj H, Bujie Z, Wang X, Wang X, Bolund L, Brunak S, Yang H, Bendixen C, Fredholm M.

Genome Biol. 2007;8(4):R45.

PMID:
17407547
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing.

Wernersson R, Schierup MH, Jørgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshøj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L.

BMC Genomics. 2005 May 10;6:70.

PMID:
15885146
[PubMed - indexed for MEDLINE]
Free PMC Article

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