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Results: 1 to 20 of 36


A novel approach to adolescents with type 1 diabetes: the team clinic model.

Raymond JK, Shea JJ, Berget C, Cain C, Fay-Itzkowitz E, Gilmer L, Hoops S, Owen D, Shepard D, Spiegel G, Klingensmith G.

Diabetes Spectr. 2015 Jan;28(1):68-71. doi: 10.2337/diaspect.28.1.68. No abstract available.


Computational modeling of heterogeneity and function of CD4+ T cells.

Carbo A, Hontecillas R, Andrew T, Eden K, Mei Y, Hoops S, Bassaganya-Riera J.

Front Cell Dev Biol. 2014 Jul 29;2:31. doi: 10.3389/fcell.2014.00031. eCollection 2014. Review.


Multistate Model Builder (MSMB): a flexible editor for compact biochemical models.

Palmisano A, Hoops S, Watson LT, Jones TC Jr, Tyson JJ, Shaffer CA.

BMC Syst Biol. 2014 Apr 4;8:42. doi: 10.1186/1752-0509-8-42.


Predictive computational modeling of the mucosal immune responses during Helicobacter pylori infection.

Carbo A, Bassaganya-Riera J, Pedragosa M, Viladomiu M, Marathe M, Eubank S, Wendelsdorf K, Bisset K, Hoops S, Deng X, Alam M, Kronsteiner B, Mei Y, Hontecillas R.

PLoS One. 2013 Sep 5;8(9):e73365. doi: 10.1371/journal.pone.0073365. eCollection 2013.


Systems modeling of molecular mechanisms controlling cytokine-driven CD4+ T cell differentiation and phenotype plasticity.

Carbo A, Hontecillas R, Kronsteiner B, Viladomiu M, Pedragosa M, Lu P, Philipson CW, Hoops S, Marathe M, Eubank S, Bisset K, Wendelsdorf K, Jarrah A, Mei Y, Bassaganya-Riera J.

PLoS Comput Biol. 2013 Apr;9(4):e1003027. doi: 10.1371/journal.pcbi.1003027. Epub 2013 Apr 4.


Modeling the role of peroxisome proliferator-activated receptor γ and microRNA-146 in mucosal immune responses to Clostridium difficile.

Viladomiu M, Hontecillas R, Pedragosa M, Carbo A, Hoops S, Michalak P, Michalak K, Guerrant RL, Roche JK, Warren CA, Bassaganya-Riera J.

PLoS One. 2012;7(10):e47525. doi: 10.1371/journal.pone.0047525. Epub 2012 Oct 11.


ENteric Immunity SImulator: a tool for in silico study of gastroenteric infections.

Wendelsdorf KV, Alam M, Bassaganya-Riera J, Bisset K, Eubank S, Hontecillas R, Hoops S, Marathe M.

IEEE Trans Nanobioscience. 2012 Sep;11(3):273-88. doi: 10.1109/TNB.2012.2211891.


Condor-COPASI: high-throughput computing for biochemical networks.

Kent E, Hoops S, Mendes P.

BMC Syst Biol. 2012 Jul 26;6:91. doi: 10.1186/1752-0509-6-91.


Hybrid modeling and simulation of stochastic effects on progression through the eukaryotic cell cycle.

Liu Z, Pu Y, Li F, Shaffer CA, Hoops S, Tyson JJ, Cao Y.

J Chem Phys. 2012 Jan 21;136(3):034105. doi: 10.1063/1.3677190.


Controlled vocabularies and semantics in systems biology.

Courtot M, Juty N, Knüpfer C, Waltemath D, Zhukova A, Dräger A, Dumontier M, Finney A, Golebiewski M, Hastings J, Hoops S, Keating S, Kell DB, Kerrien S, Lawson J, Lister A, Lu J, Machne R, Mendes P, Pocock M, Rodriguez N, Villeger A, Wilkinson DJ, Wimalaratne S, Laibe C, Hucka M, Le Novère N.

Mol Syst Biol. 2011 Oct 25;7:543. doi: 10.1038/msb.2011.77.


Minimum Information About a Simulation Experiment (MIASE).

Waltemath D, Adams R, Beard DA, Bergmann FT, Bhalla US, Britten R, Chelliah V, Cooling MT, Cooper J, Crampin EJ, Garny A, Hoops S, Hucka M, Hunter P, Klipp E, Laibe C, Miller AK, Moraru I, Nickerson D, Nielsen P, Nikolski M, Sahle S, Sauro HM, Schmidt H, Snoep JL, Tolle D, Wolkenhauer O, Le Novère N.

PLoS Comput Biol. 2011 Apr;7(4):e1001122. doi: 10.1371/journal.pcbi.1001122. Epub 2011 Apr 28. No abstract available.


Validity of the MoCA and MMSE in the detection of MCI and dementia in Parkinson disease.

Hoops S, Nazem S, Siderowf AD, Duda JE, Xie SX, Stern MB, Weintraub D.

Neurology. 2009 Nov 24;73(21):1738-45. doi: 10.1212/WNL.0b013e3181c34b47.


Enzyme kinetics and computational modeling for systems biology.

Mendes P, Messiha H, Malys N, Hoops S.

Methods Enzymol. 2009;467:583-99. doi: 10.1016/S0076-6879(09)67022-1.


Validation of the questionnaire for impulsive-compulsive disorders in Parkinson's disease.

Weintraub D, Hoops S, Shea JA, Lyons KE, Pahwa R, Driver-Dunckley ED, Adler CH, Potenza MN, Miyasaki J, Siderowf AD, Duda JE, Hurtig HI, Colcher A, Horn SS, Stern MB, Voon V.

Mov Disord. 2009 Jul 30;24(10):1461-7. doi: 10.1002/mds.22571.


Computational modeling of biochemical networks using COPASI.

Mendes P, Hoops S, Sahle S, Gauges R, Dada J, Kummer U.

Methods Mol Biol. 2009;500:17-59. doi: 10.1007/978-1-59745-525-1_2.


A new strategy for assessing sensitivities in biochemical models.

Sahle S, Mendes P, Hoops S, Kummer U.

Philos Trans A Math Phys Eng Sci. 2008 Oct 13;366(1880):3619-31. doi: 10.1098/rsta.2008.0108.


ModelMage: a tool for automatic model generation, selection and management.

Flöttmann M, Schaber J, Hoops S, Klipp E, Mendes P.

Genome Inform. 2008;20:52-63.


COPASI--a COmplex PAthway SImulator.

Hoops S, Sahle S, Gauges R, Lee C, Pahle J, Simus N, Singhal M, Xu L, Mendes P, Kummer U.

Bioinformatics. 2006 Dec 15;22(24):3067-74. Epub 2006 Oct 10.


Apoptotic vesicles crossprime CD8 T cells and protect against tuberculosis.

Winau F, Weber S, Sad S, de Diego J, Hoops SL, Breiden B, Sandhoff K, Brinkmann V, Kaufmann SH, Schaible UE.

Immunity. 2006 Jan;24(1):105-17.


Functional characterization of the postulated intramolecular sphingolipid activator protein domain of human acid sphingomyelinase.

Kölzer M, Ferlinz K, Bartelsen O, Hoops SL, Lang F, Sandhoff K.

Biol Chem. 2004 Dec;385(12):1193-5.

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