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Results: 1 to 20 of 128

1.

Neo-antigens predicted by tumor genome meta-analysis correlate with increased patient survival.

Brown SD, Warren RL, Gibb EA, Martin SD, Spinelli JJ, Nelson BH, Holt RA.

Genome Res. 2014 May;24(5):743-50. doi: 10.1101/gr.165985.113. Epub 2014 Apr 29.

PMID:
24782321
[PubMed - in process]
Free PMC Article
2.

Targeted CNS Delivery Using Human MiniPromoters and Demonstrated Compatibility with Adeno-Associated Viral Vectors.

de Leeuw CN, Dyka FM, Boye SL, Laprise S, Zhou M, Chou AY, Borretta L, McInerny SC, Banks KG, Portales-Casamar E, Swanson MI, D'Souza CA, Boye SE, Jones SJ, Holt RA, Goldowitz D, Hauswirth WW, Wasserman WW, Simpson EM.

Mol Ther Methods Clin Dev. 2014 Jan 8;1:5.

PMID:
24761428
[PubMed]
Free PMC Article
3.

T-cell epitope discovery technologies.

Sharma G, Holt RA.

Hum Immunol. 2014 Jun;75(6):514-9. doi: 10.1016/j.humimm.2014.03.003. Epub 2014 Apr 19.

PMID:
24755351
[PubMed - in process]
4.

Co-occurrence of anaerobic bacteria in colorectal carcinomas.

Warren RL, Freeman DJ, Pleasance S, Watson P, Moore RA, Cochrane K, Allen-Vercoe E, Holt RA.

Microbiome. 2013 May 15;1(1):16. doi: 10.1186/2049-2618-1-16.

PMID:
24450771
[PubMed]
Free PMC Article
5.

Combined immunodeficiency associated with homozygous MALT1 mutations.

McKinnon ML, Rozmus J, Fung SY, Hirschfeld AF, Del Bel KL, Thomas L, Marr N, Martin SD, Marwaha AK, Priatel JJ, Tan R, Senger C, Tsang A, Prendiville J, Junker AK, Seear M, Schultz KR, Sly LM, Holt RA, Patel MS, Friedman JM, Turvey SE.

J Allergy Clin Immunol. 2014 May;133(5):1458-62, 1462.e1-7. doi: 10.1016/j.jaci.2013.10.045. Epub 2013 Dec 12. No abstract available.

PMID:
24332264
[PubMed - in process]
6.

Surveillance of the tumor mutanome by T cells during progression from primary to recurrent ovarian cancer.

Wick DA, Webb JR, Nielsen JS, Martin SD, Kroeger DR, Milne K, Castellarin M, Twumasi-Boateng K, Watson PH, Holt RA, Nelson BH.

Clin Cancer Res. 2014 Mar 1;20(5):1125-34. doi: 10.1158/1078-0432.CCR-13-2147. Epub 2013 Dec 9.

PMID:
24323902
[PubMed - in process]
7.

Sequence analysis of T-cell repertoires in health and disease.

Woodsworth DJ, Castellarin M, Holt RA.

Genome Med. 2013 Oct 30;5(10):98. doi: 10.1186/gm502. eCollection 2013. Review.

PMID:
24172704
[PubMed]
8.

Non-coding-regulatory regions of human brain genes delineated by bacterial artificial chromosome knock-in mice.

Schmouth JF, Castellarin M, Laprise S, Banks KG, Bonaguro RJ, McInerny SC, Borretta L, Amirabbasi M, Korecki AJ, Portales-Casamar E, Wilson G, Dreolini L, Jones SJ, Wasserman WW, Goldowitz D, Holt RA, Simpson EM.

BMC Biol. 2013 Oct 14;11:106. doi: 10.1186/1741-7007-11-106.

PMID:
24124870
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Complete haplotype sequence of the human immunoglobulin heavy-chain variable, diversity, and joining genes and characterization of allelic and copy-number variation.

Watson CT, Steinberg KM, Huddleston J, Warren RL, Malig M, Schein J, Willsey AJ, Joy JB, Scott JK, Graves TA, Wilson RK, Holt RA, Eichler EE, Breden F.

Am J Hum Genet. 2013 Apr 4;92(4):530-46. doi: 10.1016/j.ajhg.2013.03.004. Epub 2013 Mar 28.

PMID:
23541343
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Brain microbial populations in HIV/AIDS: α-proteobacteria predominate independent of host immune status.

Branton WG, Ellestad KK, Maingat F, Wheatley BM, Rud E, Warren RL, Holt RA, Surette MG, Power C.

PLoS One. 2013;8(1):e54673. doi: 10.1371/journal.pone.0054673. Epub 2013 Jan 23.

PMID:
23355888
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Derivation of HLA types from shotgun sequence datasets.

Warren RL, Choe G, Freeman DJ, Castellarin M, Munro S, Moore R, Holt RA.

Genome Med. 2012 Dec 10;4(12):95. doi: 10.1186/gm396. eCollection 2012.

PMID:
23228053
[PubMed]
Free PMC Article
12.

Clonal evolution of high-grade serous ovarian carcinoma from primary to recurrent disease.

Castellarin M, Milne K, Zeng T, Tse K, Mayo M, Zhao Y, Webb JR, Watson PH, Nelson BH, Holt RA.

J Pathol. 2013 Mar;229(4):515-24. doi: 10.1002/path.4105. Epub 2012 Nov 29.

PMID:
22996961
[PubMed - indexed for MEDLINE]
13.

Relationship between temperature and Ceratomyxa shasta -induced mortality in Klamath River salmonids.

Ray RA, Holt RA, Bartholomew JL.

J Parasitol. 2012 Jun;98(3):520-6. doi: 10.1645/JP-GE-2737.1.

PMID:
22746389
[PubMed - indexed for MEDLINE]
14.

Density of the waterborne parasite Ceratomyxa shasta and its biological effects on salmon.

Hallett SL, Ray RA, Hurst CN, Holt RA, Buckles GR, Atkinson SD, Bartholomew JL.

Appl Environ Microbiol. 2012 May;78(10):3724-31. doi: 10.1128/AEM.07801-11. Epub 2012 Mar 9.

PMID:
22407689
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Retina restored and brain abnormalities ameliorated by single-copy knock-in of human NR2E1 in null mice.

Schmouth JF, Banks KG, Mathelier A, Gregory-Evans CY, Castellarin M, Holt RA, Gregory-Evans K, Wasserman WW, Simpson EM.

Mol Cell Biol. 2012 Apr;32(7):1296-311. doi: 10.1128/MCB.06016-11. Epub 2012 Jan 30.

PMID:
22290436
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

RELATIONSHIP BETWEEN TEMPERATURE AND CERATOMYXA SHASTA-INDUCED MORTALITY IN KLAMATH RIVER SALMONIDS.

Ray RA, Holt RA, Bartholomew JL.

J Parasitol. 2011 Dec 16. [Epub ahead of print]

PMID:
22176348
[PubMed - as supplied by publisher]
17.

RELATIONSHIP BETWEEN TEMPERATURE AND C. SHASTA-INDUCED MORTALITY IN KLAMATH RIVER SALMONIDS.

Ray RA, Holt RA, Bartholomew JL.

J Parasitol. 2011 Nov 30. [Epub ahead of print]

PMID:
22129468
[PubMed - as supplied by publisher]
18.

Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma.

Castellarin M, Warren RL, Freeman JD, Dreolini L, Krzywinski M, Strauss J, Barnes R, Watson P, Allen-Vercoe E, Moore RA, Holt RA.

Genome Res. 2012 Feb;22(2):299-306. doi: 10.1101/gr.126516.111. Epub 2011 Oct 18.

PMID:
22009989
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

The sensitivity of massively parallel sequencing for detecting candidate infectious agents associated with human tissue.

Moore RA, Warren RL, Freeman JD, Gustavsen JA, Chénard C, Friedman JM, Suttle CA, Zhao Y, Holt RA.

PLoS One. 2011;6(5):e19838. doi: 10.1371/journal.pone.0019838. Epub 2011 May 13.

PMID:
21603639
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Targeted assembly of short sequence reads.

Warren RL, Holt RA.

PLoS One. 2011 May 11;6(5):e19816. doi: 10.1371/journal.pone.0019816.

PMID:
21589938
[PubMed - indexed for MEDLINE]
Free PMC Article

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