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Effect of Nocturnal Dialysis on Prognosis in Adult Patients: A Review of the Literature.

Bridge AB, Holt KE.

Nephrol Nurs J. 2015 Jul-Aug;42(4):375-9; quiz 380. Review.


Multiple Genetic Mutations Associated with Polymyxin Resistance in Acinetobacter baumannii.

Lim TP, Ong RT, Hon PY, Hawkey J, Holt KE, Koh TH, Leong ML, Teo JQ, Tan TY, Ng MM, Hsu LY.

Antimicrob Agents Chemother. 2015 Dec;59(12):7899-902. doi: 10.1128/AAC.01884-15. Epub 2015 Oct 5.


A small Acinetobacter plasmid carrying the tet39 tetracycline resistance determinant.

Hamidian M, Holt KE, Pickard D, Hall RM.

J Antimicrob Chemother. 2015 Sep 27. pii: dkv293. [Epub ahead of print] No abstract available.


Draft Genome Sequence of a Clinical Isolate of Serratia marcescens, Strain AH0650_Sm1.

Wan Y, Gorrie CL, Jenney A, Mirceta M, Holt KE.

Genome Announc. 2015 Sep 3;3(5). pii: e01007-15. doi: 10.1128/genomeA.01007-15.


ISMapper: identifying transposase insertion sites in bacterial genomes from short read sequence data.

Hawkey J, Hamidian M, Wick RR, Edwards DJ, Billman-Jacobe H, Hall RM, Holt KE.

BMC Genomics. 2015 Sep 3;16:667. doi: 10.1186/s12864-015-1860-2.


The Effectiveness of Clinically Indicated Replacement of Peripheral Intravenous Catheters: An Evidence Review With Implications for Clinical Practice.

Morrison K, Holt KE.

Worldviews Evid Based Nurs. 2015 Aug;12(4):187-98. doi: 10.1111/wvn.12102. Epub 2015 Aug 4.


Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health.

Holt KE, Wertheim H, Zadoks RN, Baker S, Whitehouse CA, Dance D, Jenney A, Connor TR, Hsu LY, Severin J, Brisse S, Cao H, Wilksch J, Gorrie C, Schultz MB, Edwards DJ, Nguyen KV, Nguyen TV, Dao TT, Mensink M, Minh VL, Nhu NT, Schultsz C, Kuntaman K, Newton PN, Moore CE, Strugnell RA, Thomson NR.

Proc Natl Acad Sci U S A. 2015 Jul 7;112(27):E3574-81. doi: 10.1073/pnas.1501049112. Epub 2015 Jun 22.


Bandage: interactive visualization of de novo genome assemblies.

Wick RR, Schultz MB, Zobel J, Holt KE.

Bioinformatics. 2015 Oct 15;31(20):3350-2. doi: 10.1093/bioinformatics/btv383. Epub 2015 Jun 22.


Genomic resistance island AGI1 carrying a complex class 1 integron in a multiply antibiotic-resistant ST25 Acinetobacter baumannii isolate.

Hamidian M, Holt KE, Hall RM.

J Antimicrob Chemother. 2015 Sep;70(9):2519-23. doi: 10.1093/jac/dkv137. Epub 2015 May 28.


Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events.

Wong VK, Baker S, Pickard DJ, Parkhill J, Page AJ, Feasey NA, Kingsley RA, Thomson NR, Keane JA, Weill FX, Edwards DJ, Hawkey J, Harris SR, Mather AE, Cain AK, Hadfield J, Hart PJ, Thieu NT, Klemm EJ, Glinos DA, Breiman RF, Watson CH, Kariuki S, Gordon MA, Heyderman RS, Okoro C, Jacobs J, Lunguya O, Edmunds WJ, Msefula C, Chabalgoity JA, Kama M, Jenkins K, Dutta S, Marks F, Campos J, Thompson C, Obaro S, MacLennan CA, Dolecek C, Keddy KH, Smith AM, Parry CM, Karkey A, Mulholland EK, Campbell JI, Dongol S, Basnyat B, Dufour M, Bandaranayake D, Naseri TT, Singh SP, Hatta M, Newton P, Onsare RS, Isaia L, Dance D, Davong V, Thwaites G, Wijedoru L, Crump JA, De Pinna E, Nair S, Nilles EJ, Thanh DP, Turner P, Soeng S, Valcanis M, Powling J, Dimovski K, Hogg G, Farrar J, Holt KE, Dougan G.

Nat Genet. 2015 Jun;47(6):632-9. doi: 10.1038/ng.3281. Epub 2015 May 11.


A platform for leveraging next generation sequencing for routine microbiology and public health use.

Rusu LI, Wyres KL, Reumann M, Queiroz C, Bojovschi A, Conway T, Garg S, Edwards DJ, Hogg G, Holt KE.

Health Inf Sci Syst. 2015 Feb 24;3(Suppl 1 HISA Big Data in Biomedicine and Healthcare 2013 Con):S7. doi: 10.1186/2047-2501-3-S1-S7. eCollection 2015.


The infant nasopharyngeal microbiome impacts severity of lower respiratory infection and risk of asthma development.

Teo SM, Mok D, Pham K, Kusel M, Serralha M, Troy N, Holt BJ, Hales BJ, Walker ML, Hollams E, Bochkov YA, Grindle K, Johnston SL, Gern JE, Sly PD, Holt PG, Holt KE, Inouye M.

Cell Host Microbe. 2015 May 13;17(5):704-15. doi: 10.1016/j.chom.2015.03.008. Epub 2015 Apr 9.


Extensive Capsule Locus Variation and Large-Scale Genomic Recombination within the Klebsiella pneumoniae Clonal Group 258.

Wyres KL, Gorrie C, Edwards DJ, Wertheim HF, Hsu LY, Van Kinh N, Zadoks R, Baker S, Holt KE.

Genome Biol Evol. 2015 Apr 10;7(5):1267-79. doi: 10.1093/gbe/evv062.


Multidrug-resistant Salmonella enterica serotype Typhi, Gulf of Guinea Region, Africa.

Baltazar M, Ngandjio A, Holt KE, Lepillet E, Pardos de la Gandara M, Collard JM, Bercion R, Nzouankeu A, Le Hello S, Dougan G, Fonkoua MC, Weill FX.

Emerg Infect Dis. 2015 Apr;21(4):655-9. doi: 10.3201/eid2104.141355.


Genome Sequence of Acinetobacter baumannii Strain A1, an Early Example of Antibiotic-Resistant Global Clone 1.

Holt KE, Hamidian M, Kenyon JJ, Wynn MT, Hawkey J, Pickard D, Hall RM.

Genome Announc. 2015 Mar 12;3(2). pii: e00032-15. doi: 10.1128/genomeA.00032-15.


Convergent adaptation in the dominant global hospital clone ST239 of methicillin-resistant Staphylococcus aureus.

Baines SL, Holt KE, Schultz MB, Seemann T, Howden BO, Jensen SO, van Hal SJ, Coombs GW, Firth N, Powell DR, Stinear TP, Howden BP.

MBio. 2015 Mar 3;6(2):e00080. doi: 10.1128/mBio.00080-15.


A type 2 A/C2 plasmid carrying the aacC4 apramycin resistance gene and the erm(42) erythromycin resistance gene recovered from two Salmonella enterica serovars.

Harmer CJ, Holt KE, Hall RM.

J Antimicrob Chemother. 2015 Apr;70(4):1021-5. doi: 10.1093/jac/dku489. Epub 2014 Dec 2.


Carbapenem and amikacin resistance on a large conjugative Acinetobacter baumannii plasmid.

Nigro SJ, Holt KE, Pickard D, Hall RM.

J Antimicrob Chemother. 2015 Apr;70(4):1259-61. doi: 10.1093/jac/dku486. Epub 2014 Nov 27. No abstract available.


SRST2: Rapid genomic surveillance for public health and hospital microbiology labs.

Inouye M, Dashnow H, Raven LA, Schultz MB, Pope BJ, Tomita T, Zobel J, Holt KE.

Genome Med. 2014 Nov 20;6(11):90. doi: 10.1186/s13073-014-0090-6. eCollection 2014.


The complete sequence of Salmonella genomic island SGI2.

Hamidian M, Holt KE, Hall RM.

J Antimicrob Chemother. 2015 Feb;70(2):617-9. doi: 10.1093/jac/dku407. Epub 2014 Oct 14. No abstract available.

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