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Items: 1 to 20 of 77

1.

Differential host susceptibility and bacterial virulence factors driving Klebsiella liver abscess in an ethnically diverse population.

Lee IR, Molton JS, Wyres KL, Gorrie C, Wong J, Hoh CH, Teo J, Kalimuddin S, Lye DC, Archuleta S, Holt KE, Gan YH.

Sci Rep. 2016 Jul 13;6:29316. doi: 10.1038/srep29316.

2.

The Molecular and Spatial Epidemiology of Typhoid Fever in Rural Cambodia.

Pham Thanh D, Thompson CN, Rabaa MA, Sona S, Sopheary S, Kumar V, Moore C, Tran Vu Thieu N, Wijedoru L, Holt KE, Wong V, Pickard D, Thwaites GE, Day N, Dougan G, Turner P, Parry CM, Baker S.

PLoS Negl Trop Dis. 2016 Jun 22;10(6):e0004785. doi: 10.1371/journal.pntd.0004785. eCollection 2016 Jun.

3.

Inducible colistin resistance via a disrupted plasmid-borne mcr-1 gene in a 2008 Vietnamese Shigella sonnei isolate.

Pham Thanh D, Thanh Tuyen H, Nguyen Thi Nguyen T, Chung The H, Wick RR, Thwaites GE, Baker S, Holt KE.

J Antimicrob Chemother. 2016 May 30. pii: dkw173. [Epub ahead of print]

PMID:
27246235
4.

Cross-validation to select Bayesian hierarchical models in phylogenetics.

DuchĂȘne S, DuchĂȘne DA, Di Giallonardo F, Eden JS, Geoghegan JL, Holt KE, Ho SY, Holmes EC.

BMC Evol Biol. 2016 May 26;16(1):115. doi: 10.1186/s12862-016-0688-y.

5.

Comparative genomics of Crohn's disease-associated adherent-invasive Escherichia coli.

O'Brien CL, Bringer MA, Holt KE, Gordon DM, Dubois AL, Barnich N, Darfeuille-Michaud A, Pavli P.

Gut. 2016 Apr 20. pii: gutjnl-2015-311059. doi: 10.1136/gutjnl-2015-311059. [Epub ahead of print]

6.

A novel ciprofloxacin-resistant subclade of H58 Salmonella Typhi is associated with fluoroquinolone treatment failure.

Pham Thanh D, Karkey A, Dongol S, Ho Thi N, Thompson CN, Rabaa MA, Arjyal A, Holt KE, Wong V, Tran Vu Thieu N, Voong Vinh P, Ha Thanh T, Pradhan A, Shrestha SK, Gajurel D, Pickard D, Parry CM, Dougan G, Wolbers M, Dolecek C, Thwaites GE, Basnyat B, Baker S.

Elife. 2016 Mar 11;5:e14003. doi: 10.7554/eLife.14003.

7.

The genomic signatures of Shigella evolution, adaptation and geographical spread.

The HC, Thanh DP, Holt KE, Thomson NR, Baker S.

Nat Rev Microbiol. 2016 Apr;14(4):235-50. doi: 10.1038/nrmicro.2016.10. Epub 2016 Feb 29.

PMID:
26923111
8.

pCERC3 from a commensal ST95 Escherichia coli: A ColV virulence-multiresistance plasmid carrying a sul3-associated class 1 integron.

Moran RA, Holt KE, Hall RM.

Plasmid. 2016 Mar-May;84-85:11-9. doi: 10.1016/j.plasmid.2016.02.002. Epub 2016 Feb 18.

PMID:
26855083
9.

Genome Sequence of Acinetobacter baumannii Strain D36, an Antibiotic-Resistant Isolate from Lineage 2 of Global Clone 1.

Hamidian M, Hawkey J, Holt KE, Hall RM.

Genome Announc. 2015 Dec 17;3(6). pii: e01478-15. doi: 10.1128/genomeA.01478-15.

10.

Effect of Nocturnal Dialysis on Prognosis in Adult Patients: A Review of the Literature.

Bridge AB, Holt KE.

Nephrol Nurs J. 2015 Jul-Aug;42(4):375-9; quiz 380. Review.

PMID:
26462310
11.

Multiple Genetic Mutations Associated with Polymyxin Resistance in Acinetobacter baumannii.

Lim TP, Ong RT, Hon PY, Hawkey J, Holt KE, Koh TH, Leong ML, Teo JQ, Tan TY, Ng MM, Hsu LY.

Antimicrob Agents Chemother. 2015 Dec;59(12):7899-902. doi: 10.1128/AAC.01884-15. Epub 2015 Oct 5.

12.

A small Acinetobacter plasmid carrying the tet39 tetracycline resistance determinant.

Hamidian M, Holt KE, Pickard D, Hall RM.

J Antimicrob Chemother. 2016 Jan;71(1):269-71. doi: 10.1093/jac/dkv293. Epub 2015 Sep 27. No abstract available.

13.

Draft Genome Sequence of a Clinical Isolate of Serratia marcescens, Strain AH0650_Sm1.

Wan Y, Gorrie CL, Jenney A, Mirceta M, Holt KE.

Genome Announc. 2015 Sep 3;3(5). pii: e01007-15. doi: 10.1128/genomeA.01007-15.

14.

ISMapper: identifying transposase insertion sites in bacterial genomes from short read sequence data.

Hawkey J, Hamidian M, Wick RR, Edwards DJ, Billman-Jacobe H, Hall RM, Holt KE.

BMC Genomics. 2015 Sep 3;16:667. doi: 10.1186/s12864-015-1860-2.

15.

The Effectiveness of Clinically Indicated Replacement of Peripheral Intravenous Catheters: An Evidence Review With Implications for Clinical Practice.

Morrison K, Holt KE.

Worldviews Evid Based Nurs. 2015 Aug;12(4):187-98. doi: 10.1111/wvn.12102. Epub 2015 Aug 4. Review.

PMID:
26243585
16.

Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health.

Holt KE, Wertheim H, Zadoks RN, Baker S, Whitehouse CA, Dance D, Jenney A, Connor TR, Hsu LY, Severin J, Brisse S, Cao H, Wilksch J, Gorrie C, Schultz MB, Edwards DJ, Nguyen KV, Nguyen TV, Dao TT, Mensink M, Minh VL, Nhu NT, Schultsz C, Kuntaman K, Newton PN, Moore CE, Strugnell RA, Thomson NR.

Proc Natl Acad Sci U S A. 2015 Jul 7;112(27):E3574-81. doi: 10.1073/pnas.1501049112. Epub 2015 Jun 22.

17.

Bandage: interactive visualization of de novo genome assemblies.

Wick RR, Schultz MB, Zobel J, Holt KE.

Bioinformatics. 2015 Oct 15;31(20):3350-2. doi: 10.1093/bioinformatics/btv383. Epub 2015 Jun 22.

18.

Genomic resistance island AGI1 carrying a complex class 1 integron in a multiply antibiotic-resistant ST25 Acinetobacter baumannii isolate.

Hamidian M, Holt KE, Hall RM.

J Antimicrob Chemother. 2015 Sep;70(9):2519-23. doi: 10.1093/jac/dkv137. Epub 2015 May 28.

PMID:
26023211
19.

Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events.

Wong VK, Baker S, Pickard DJ, Parkhill J, Page AJ, Feasey NA, Kingsley RA, Thomson NR, Keane JA, Weill FX, Edwards DJ, Hawkey J, Harris SR, Mather AE, Cain AK, Hadfield J, Hart PJ, Thieu NT, Klemm EJ, Glinos DA, Breiman RF, Watson CH, Kariuki S, Gordon MA, Heyderman RS, Okoro C, Jacobs J, Lunguya O, Edmunds WJ, Msefula C, Chabalgoity JA, Kama M, Jenkins K, Dutta S, Marks F, Campos J, Thompson C, Obaro S, MacLennan CA, Dolecek C, Keddy KH, Smith AM, Parry CM, Karkey A, Mulholland EK, Campbell JI, Dongol S, Basnyat B, Dufour M, Bandaranayake D, Naseri TT, Singh SP, Hatta M, Newton P, Onsare RS, Isaia L, Dance D, Davong V, Thwaites G, Wijedoru L, Crump JA, De Pinna E, Nair S, Nilles EJ, Thanh DP, Turner P, Soeng S, Valcanis M, Powling J, Dimovski K, Hogg G, Farrar J, Holt KE, Dougan G.

Nat Genet. 2015 Jun;47(6):632-9. doi: 10.1038/ng.3281. Epub 2015 May 11.

20.

A platform for leveraging next generation sequencing for routine microbiology and public health use.

Rusu LI, Wyres KL, Reumann M, Queiroz C, Bojovschi A, Conway T, Garg S, Edwards DJ, Hogg G, Holt KE.

Health Inf Sci Syst. 2015 Feb 24;3(Suppl 1 HISA Big Data in Biomedicine and Healthcare 2013 Con):S7. doi: 10.1186/2047-2501-3-S1-S7. eCollection 2015.

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