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Results: 1 to 20 of 46

1.

Analysis of Salmonella enterica Serovar Typhimurium Variable-Number Tandem-Repeat Data for Public Health Investigation Based on Measured Mutation Rates and Whole-Genome Sequence Comparisons.

Dimovski K, Cao H, Wijburg OL, Strugnell RA, Mantena RK, Whipp M, Hogg G, Holt KE.

J Bacteriol. 2014 Aug 15;196(16):3036-44. doi: 10.1128/JB.01820-14. Epub 2014 Jun 23.

PMID:
24957617
[PubMed - in process]
2.

A conjugative plasmid carrying the carbapenem resistance gene blaOXA-23 in AbaR4 in an extensively resistant GC1 Acinetobacter baumannii isolate.

Hamidian M, Kenyon JJ, Holt KE, Pickard D, Hall RM.

J Antimicrob Chemother. 2014 Jun 6. pii: dku188. [Epub ahead of print]

PMID:
24907141
[PubMed - as supplied by publisher]
3.

Insertions in the OCL1 locus of Acinetobacter baumannii lead to shortened lipooligosaccharides.

Kenyon JJ, Holt KE, Pickard D, Dougan G, Hall RM.

Res Microbiol. 2014 Jul-Aug;165(6):472-5. doi: 10.1016/j.resmic.2014.05.034. Epub 2014 May 23.

PMID:
24861001
[PubMed - in process]
Free PMC Article
4.

An outpatient, ambulant-design, controlled human infection model using escalating doses of Salmonella Typhi challenge delivered in sodium bicarbonate solution.

Waddington CS, Darton TC, Jones C, Haworth K, Peters A, John T, Thompson BA, Kerridge SA, Kingsley RA, Zhou L, Holt KE, Yu LM, Lockhart S, Farrar JJ, Sztein MB, Dougan G, Angus B, Levine MM, Pollard AJ.

Clin Infect Dis. 2014 May;58(9):1230-40. doi: 10.1093/cid/ciu078. Epub 2014 Feb 10.

PMID:
24519873
[PubMed - in process]
Free PMC Article
5.

Adaptive change inferred from genomic population analysis of the ST93 epidemic clone of community-associated methicillin-resistant Staphylococcus aureus.

Stinear TP, Holt KE, Chua K, Stepnell J, Tuck KL, Coombs G, Harrison PF, Seemann T, Howden BP.

Genome Biol Evol. 2014;6(2):366-78. doi: 10.1093/gbe/evu022.

PMID:
24482534
[PubMed - in process]
Free PMC Article
6.

Characterization of the yehUT two-component regulatory system of Salmonella enterica Serovar Typhi and Typhimurium.

Wong VK, Pickard DJ, Barquist L, Sivaraman K, Page AJ, Hart PJ, Arends MJ, Holt KE, Kane L, Mottram LF, Ellison L, Bautista R, McGee CJ, Kay SJ, Wileman TM, Kenney LJ, MacLennan CA, Kingsley RA, Dougan G.

PLoS One. 2013 Dec 30;8(12):e84567. doi: 10.1371/journal.pone.0084567. eCollection 2013.

PMID:
24386394
[PubMed - in process]
Free PMC Article
7.

Evidence of microevolution of Salmonella Typhimurium during a series of egg-associated outbreaks linked to a single chicken farm.

Hawkey J, Edwards DJ, Dimovski K, Hiley L, Billman-Jacobe H, Hogg G, Holt KE.

BMC Genomics. 2013 Nov 19;14:800. doi: 10.1186/1471-2164-14-800.

PMID:
24245509
[PubMed - in process]
Free PMC Article
8.

A GC1 Acinetobacter baumannii isolate carrying AbaR3 and the aminoglycoside resistance transposon TnaphA6 in a conjugative plasmid.

Hamidian M, Holt KE, Pickard D, Dougan G, Hall RM.

J Antimicrob Chemother. 2014 Apr;69(4):955-8. doi: 10.1093/jac/dkt454. Epub 2013 Nov 13.

PMID:
24235096
[PubMed - in process]
Free PMC Article
9.

Tracking the establishment of local endemic populations of an emergent enteric pathogen.

Holt KE, Thieu Nga TV, Thanh DP, Vinh H, Kim DW, Vu Tra MP, Campbell JI, Hoang NV, Vinh NT, Minh PV, Thuy CT, Nga TT, Thompson C, Dung TT, Nhu NT, Vinh PV, Tuyet PT, Phuc HL, Lien NT, Phu BD, Ai NT, Tien NM, Dong N, Parry CM, Hien TT, Farrar JJ, Parkhill J, Dougan G, Thomson NR, Baker S.

Proc Natl Acad Sci U S A. 2013 Oct 22;110(43):17522-7. doi: 10.1073/pnas.1308632110. Epub 2013 Sep 30.

PMID:
24082120
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Identification of a marker for two lineages within the GC1 clone of Acinetobacter baumannii.

Hamidian M, Wynn M, Holt KE, Pickard D, Dougan G, Hall RM.

J Antimicrob Chemother. 2014 Feb;69(2):557-8. doi: 10.1093/jac/dkt379. Epub 2013 Sep 29. No abstract available.

PMID:
24080502
[PubMed - in process]
Free PMC Article
11.

Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans.

Comas I, Coscolla M, Luo T, Borrell S, Holt KE, Kato-Maeda M, Parkhill J, Malla B, Berg S, Thwaites G, Yeboah-Manu D, Bothamley G, Mei J, Wei L, Bentley S, Harris SR, Niemann S, Diel R, Aseffa A, Gao Q, Young D, Gagneux S.

Nat Genet. 2013 Oct;45(10):1176-82. doi: 10.1038/ng.2744. Epub 2013 Sep 1.

PMID:
23995134
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Genome and transcriptome adaptation accompanying emergence of the definitive type 2 host-restricted Salmonella enterica serovar Typhimurium pathovar.

Kingsley RA, Kay S, Connor T, Barquist L, Sait L, Holt KE, Sivaraman K, Wileman T, Goulding D, Clare S, Hale C, Seshasayee A, Harris S, Thomson NR, Gardner P, Rabsch W, Wigley P, Humphrey T, Parkhill J, Dougan G.

MBio. 2013 Aug 27;4(5):e00565-13. doi: 10.1128/mBio.00565-13.

PMID:
23982073
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Genomic insights to control the emergence of vancomycin-resistant enterococci.

Howden BP, Holt KE, Lam MM, Seemann T, Ballard S, Coombs GW, Tong SY, Grayson ML, Johnson PD, Stinear TP.

MBio. 2013 Aug 13;4(4). pii: e00412-13. doi: 10.1128/mBio.00412-13.

PMID:
23943759
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Identification of Salmonella enterica serovar Typhi genotypes by use of rapid multiplex ligation-dependent probe amplification.

Pham Thanh D, Tran Vu Thieu N, Tran Thuy C, Lodén M, Tuin K, Campbell JI, Van Minh Hoang N, Voong Vinh P, Farrar JJ, Holt KE, Dougan G, Baker S.

J Clin Microbiol. 2013 Sep;51(9):2950-8. doi: 10.1128/JCM.01010-13. Epub 2013 Jul 3.

PMID:
23824765
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Draft Genome Sequences for Ten Salmonella enterica Serovar Typhimurium Phage Type 135 Variants.

Hogg G, Dimovski K, Hiley L, Holt KE.

Genome Announc. 2013 Jun 27;1(3). pii: e00293-13. doi: 10.1128/genomeA.00293-13.

PMID:
23792739
[PubMed]
Free PMC Article
16.

Beginner's guide to comparative bacterial genome analysis using next-generation sequence data.

Edwards DJ, Holt KE.

Microb Inform Exp. 2013 Apr 10;3(1):2. doi: 10.1186/2042-5783-3-2.

PMID:
23575213
[PubMed]
Free PMC Article
17.

Global phylogeny of Shigella sonnei strains from limited single nucleotide polymorphisms (SNPs) and development of a rapid and cost-effective SNP-typing scheme for strain identification by high-resolution melting analysis.

Sangal V, Holt KE, Yuan J, Brown DJ, Filliol-Toutain I, Weill FX, Kim DW, da Silveira WD, Pickard D, Thomson NR, Parkhill J, Yu J.

J Clin Microbiol. 2013 Jan;51(1):303-5. doi: 10.1128/JCM.02238-12. Epub 2012 Oct 31.

PMID:
23115259
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

A bioinformatic strategy for the detection, classification and analysis of bacterial autotransporters.

Celik N, Webb CT, Leyton DL, Holt KE, Heinz E, Gorrell R, Kwok T, Naderer T, Strugnell RA, Speed TP, Teasdale RD, Likić VA, Lithgow T.

PLoS One. 2012;7(8):e43245. doi: 10.1371/journal.pone.0043245. Epub 2012 Aug 14.

PMID:
22905239
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe.

Holt KE, Baker S, Weill FX, Holmes EC, Kitchen A, Yu J, Sangal V, Brown DJ, Coia JE, Kim DW, Choi SY, Kim SH, da Silveira WD, Pickard DJ, Farrar JJ, Parkhill J, Dougan G, Thomson NR.

Nat Genet. 2012 Sep;44(9):1056-9. doi: 10.1038/ng.2369. Epub 2012 Aug 5.

PMID:
22863732
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Short read sequence typing (SRST): multi-locus sequence types from short reads.

Inouye M, Conway TC, Zobel J, Holt KE.

BMC Genomics. 2012 Jul 24;13:338.

PMID:
22827703
[PubMed - indexed for MEDLINE]
Free PMC Article

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