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Temporal and spatial variation of the human microbiota during pregnancy.

DiGiulio DB, Callahan BJ, McMurdie PJ, Costello EK, Lyell DJ, Robaczewska A, Sun CL, Goltsman DS, Wong RJ, Shaw G, Stevenson DK, Holmes SP, Relman DA.

Proc Natl Acad Sci U S A. 2015 Aug 17. pii: 201502875. [Epub ahead of print]


Functional metastatic parathyroid adenocarcinoma in a dog.

Kishi EN, Holmes SP, Abbott JR, Bacon NJ.

Can Vet J. 2014 Apr;55(4):383-8. Erratum in: Can Vet J. 2014 May;55(5):494.


Development and characterization of a Yucatan miniature biomedical pig permanent middle cerebral artery occlusion stroke model.

Platt SR, Holmes SP, Howerth EW, Duberstein KJ, Dove CR, Kinder HA, Wyatt EL, Linville AV, Lau VW, Stice SL, Hill WD, Hess DC, West FD.

Exp Transl Stroke Med. 2014 Mar 23;6(1):5. doi: 10.1186/2040-7378-6-5.


Evaluation of standard magnetic resonance characteristics used to differentiate neoplastic, inflammatory, and vascular brain lesions in dogs.

Young BD, Fosgate GT, Holmes SP, Wolff CA, Chen-Allen AV, Kent M, Platt SR, Savage MY, Schatzberg SJ, Levine JM.

Vet Radiol Ultrasound. 2014 Jul-Aug;55(4):399-406. doi: 10.1111/vru.12137. Epub 2014 Jan 28.


Gait analysis in a pre- and post-ischemic stroke biomedical pig model.

Duberstein KJ, Platt SR, Holmes SP, Dove CR, Howerth EW, Kent M, Stice SL, Hill WD, Hess DC, West FD.

Physiol Behav. 2014 Feb 10;125:8-16. doi: 10.1016/j.physbeh.2013.11.004. Epub 2013 Nov 25.


HIV-1 transmission networks in a small world.

Pennings PS, Holmes SP, Shafer RW.

J Infect Dis. 2014 Jan 15;209(2):180-2. doi: 10.1093/infdis/jit525. Epub 2013 Oct 22. No abstract available.


Genetically dictated change in host mucus carbohydrate landscape exerts a diet-dependent effect on the gut microbiota.

Kashyap PC, Marcobal A, Ursell LK, Smits SA, Sonnenburg ED, Costello EK, Higginbottom SK, Domino SE, Holmes SP, Relman DA, Knight R, Gordon JI, Sonnenburg JL.

Proc Natl Acad Sci U S A. 2013 Oct 15;110(42):17059-64. doi: 10.1073/pnas.1306070110. Epub 2013 Sep 23.


Canine vaginal leiomyoma diagnosed by CT vaginourethrography.

Weissman A, Jiménez D, Torres B, Cornell K, Holmes SP.

J Am Anim Hosp Assoc. 2013 Nov-Dec;49(6):394-7. doi: 10.5326/JAAHA-MS-5922. Epub 2013 Sep 19.


Detection of cytomegalovirus drug resistance mutations by next-generation sequencing.

Sahoo MK, Lefterova MI, Yamamoto F, Waggoner JJ, Chou S, Holmes SP, Anderson MW, Pinsky BA.

J Clin Microbiol. 2013 Nov;51(11):3700-10. doi: 10.1128/JCM.01605-13. Epub 2013 Aug 28.


Prototypical Recombinant Multi-Protease Inhibitor Resistant Infectious Molecular Clones of Human Immunodeficiency Virus Type-1.

Varghese V, Mitsuya Y, Fessel WJ, Liu TF, Melikian GL, Katzenstein DA, Schiffer CA, Holmes SP, Shafer RW.

Antimicrob Agents Chemother. 2013 Jun 24. [Epub ahead of print]


Adrenal gland function in a dog following unilateral complete adrenalectomy and contralateral partial adrenalectomy.

Larson RN, Schmiedt CW, Wang A, Lawrence J, Howerth EW, Holmes SP, Grey SW.

J Am Vet Med Assoc. 2013 May 15;242(10):1398-404. doi: 10.2460/javma.242.10.1398.


Differential tolerance to copper, but no evidence of population-level genetic differences in a widely-dispersing native barnacle.

Gall ML, Holmes SP, Dafforn KA, Johnston EL.

Ecotoxicology. 2013 Jul;22(5):929-37. doi: 10.1007/s10646-013-1063-z. Epub 2013 Mar 19.


PRC2/EED-EZH2 complex is up-regulated in breast cancer lymph node metastasis compared to primary tumor and correlates with tumor proliferation in situ.

Yu H, Simons DL, Segall I, Carcamo-Cavazos V, Schwartz EJ, Yan N, Zuckerman NS, Dirbas FM, Johnson DL, Holmes SP, Lee PP.

PLoS One. 2012;7(12):e51239. doi: 10.1371/journal.pone.0051239. Epub 2012 Dec 10.


Bilateral lumbar hernias in a domestic shorthair cat.

Olin SJ, Holmes SP, Jeffs A, Cornell KK.

J Am Vet Med Assoc. 2012 Dec 1;241(11):1495-8. doi: 10.2460/javma.241.11.1495.


Low-level persistence of drug resistance mutations in hepatitis B virus-infected subjects with a past history of Lamivudine treatment.

Margeridon-Thermet S, Svarovskaia ES, Babrzadeh F, Martin R, Liu TF, Pacold M, Reuman EC, Holmes SP, Borroto-Esoda K, Shafer RW.

Antimicrob Agents Chemother. 2013 Jan;57(1):343-9. doi: 10.1128/AAC.01601-12. Epub 2012 Oct 31.


Denoising PCR-amplified metagenome data.

Rosen MJ, Callahan BJ, Fisher DS, Holmes SP.

BMC Bioinformatics. 2012 Oct 31;13:283. doi: 10.1186/1471-2105-13-283.


Estimating niche width using stable isotopes in the face of habitat variability: a modelling case study in the marine environment.

Cummings DO, Buhl J, Lee RW, Simpson SJ, Holmes SP.

PLoS One. 2012;7(8):e40539. doi: 10.1371/journal.pone.0040539. Epub 2012 Aug 2.


Magnetic resonance imaging for the differentiation of neoplastic, inflammatory, and cerebrovascular brain disease in dogs.

Wolff CA, Holmes SP, Young BD, Chen AV, Kent M, Platt SR, Savage MY, Schatzberg SJ, Fosgate GT, Levine JM.

J Vet Intern Med. 2012 May-Jun;26(3):589-97. doi: 10.1111/j.1939-1676.2012.00899.x. Epub 2012 Mar 7.


Magnetic resonance imaging enhancement of intervertebral disc disease in 30 dogs following chemical fat saturation.

Freeman AC, Platt SR, Kent M, Howerth E, Holmes SP.

J Small Anim Pract. 2012 Feb;53(2):120-5. doi: 10.1111/j.1748-5827.2011.01174.x. Epub 2012 Jan 17.


Calvarial hyperostosis presenting as unilateral exophthalmos in a female English Springer Spaniel.

Mathes RL, Holmes SP, Coleman KD, Radlinsky MA, Moore PA.

Vet Ophthalmol. 2012 Jul;15(4):263-70. doi: 10.1111/j.1463-5224.2011.00969.x. Epub 2011 Dec 22.

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