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Results: 1 to 20 of 48

1.

Delineating transcriptional networks of prognostic gene signatures refines treatment recommendations for lymph node-negative breast cancer patients.

Lanigan F, Brien GL, Fan Y, Madden SF, Jerman E, Maratha A, Aloraifi F, Hokamp K, Dunne EJ, Lohan AJ, Flanagan L, Garbe JC, Stampfer MR, Fridberg M, Jirstrom K, Quinn CM, Loftus B, Gallagher WM, Geraghty J, Bracken AP.

FEBS J. 2015 Jun 20. doi: 10.1111/febs.13354. [Epub ahead of print]

PMID:
26094870
2.

Circadian control of innate immunity in macrophages by miR-155 targeting Bmal1.

Curtis AM, Fagundes CT, Yang G, Palsson-McDermott EM, Wochal P, McGettrick AF, Foley NH, Early JO, Chen L, Zhang H, Xue C, Geiger SS, Hokamp K, Reilly MP, Coogan AN, Vigorito E, FitzGerald GA, O'Neill LA.

Proc Natl Acad Sci U S A. 2015 Jun 9;112(23):7231-6. doi: 10.1073/pnas.1501327112. Epub 2015 May 20.

PMID:
25995365
3.

Analysis of the Bovine Monocyte-Derived Macrophage Response to Mycobacterium avium Subspecies Paratuberculosis Infection Using RNA-seq.

Casey ME, Meade KG, Nalpas NC, Taraktsoglou M, Browne JA, Killick KE, Park SD, Gormley E, Hokamp K, Magee DA, MacHugh DE.

Front Immunol. 2015 Feb 4;6:23. doi: 10.3389/fimmu.2015.00023. eCollection 2015.

4.

Gene expression changes during retinal development and rod specification.

Mansergh FC, Carrigan M, Hokamp K, Farrar GJ.

Mol Vis. 2015 Jan 20;21:61-87. eCollection 2015.

5.

Genome-wide analysis of phosphorylated PhoP binding to chromosomal DNA reveals several novel features of the PhoPR-mediated phosphate limitation response in Bacillus subtilis.

Salzberg LI, Botella E, Hokamp K, Antelmann H, Maaß S, Becher D, Noone D, Devine KM.

J Bacteriol. 2015 Apr;197(8):1492-506. doi: 10.1128/JB.02570-14. Epub 2015 Feb 9.

PMID:
25666134
6.

Telomeric ORFs (TLOs) in Candida spp. Encode mediator subunits that regulate distinct virulence traits.

Haran J, Boyle H, Hokamp K, Yeomans T, Liu Z, Church M, Fleming AB, Anderson MZ, Berman J, Myers LC, Sullivan DJ, Moran GP.

PLoS Genet. 2014 Oct 30;10(10):e1004658. doi: 10.1371/journal.pgen.1004658. eCollection 2014 Oct.

7.

Key Hub and Bottleneck Genes Differentiate the Macrophage Response to Virulent and Attenuated Mycobacterium bovis.

Killick KE, Magee DA, Park SD, Taraktsoglou M, Browne JA, Conlon KM, Nalpas NC, Gormley E, Gordon SV, MacHugh DE, Hokamp K.

Front Immunol. 2014 Oct 1;5:422. doi: 10.3389/fimmu.2014.00422. eCollection 2014.

8.

RNA-seq Transcriptional Profiling of Peripheral Blood Leukocytes from Cattle Infected with Mycobacterium bovis.

McLoughlin KE, Nalpas NC, Rue-Albrecht K, Browne JA, Magee DA, Killick KE, Park SD, Hokamp K, Meade KG, O'Farrelly C, Gormley E, Gordon SV, MacHugh DE.

Front Immunol. 2014 Aug 26;5:396. doi: 10.3389/fimmu.2014.00396. eCollection 2014.

9.

A model system for studying the transcriptomic and physiological changes associated with mammalian host-adaptation by Leptospira interrogans serovar Copenhageni.

Caimano MJ, Sivasankaran SK, Allard A, Hurley D, Hokamp K, Grassmann AA, Hinton JC, Nally JE.

PLoS Pathog. 2014 Mar 13;10(3):e1004004. doi: 10.1371/journal.ppat.1004004. eCollection 2014 Mar.

10.

A transcription factor network coordinates attraction, repulsion, and adhesion combinatorially to control motor axon pathway selection.

Zarin AA, Asadzadeh J, Hokamp K, McCartney D, Yang L, Bashaw GJ, Labrador JP.

Neuron. 2014 Mar 19;81(6):1297-311. doi: 10.1016/j.neuron.2014.01.038. Epub 2014 Feb 20.

11.

Complete Genome Sequence of Salmonella enterica Serovar Agona Pulsed-Field Type SAGOXB.0066, Cause of a 2008 Pan-European Outbreak.

McCusker MP, Hokamp K, Buckley JF, Wall PG, Martins M, Fanning S.

Genome Announc. 2014 Jan 23;2(1). pii: e01219-13. doi: 10.1128/genomeA.01219-13.

12.

An infection-relevant transcriptomic compendium for Salmonella enterica Serovar Typhimurium.

Kröger C, Colgan A, Srikumar S, Händler K, Sivasankaran SK, Hammarlöf DL, Canals R, Grissom JE, Conway T, Hokamp K, Hinton JC.

Cell Host Microbe. 2013 Dec 11;14(6):683-95. doi: 10.1016/j.chom.2013.11.010.

13.

Receptor-mediated recognition of mycobacterial pathogens.

Killick KE, Ní Cheallaigh C, O'Farrelly C, Hokamp K, MacHugh DE, Harris J.

Cell Microbiol. 2013 Sep;15(9):1484-95. doi: 10.1111/cmi.12161. Epub 2013 Jul 29. Review.

PMID:
23795683
14.

Whole-transcriptome, high-throughput RNA sequence analysis of the bovine macrophage response to Mycobacterium bovis infection in vitro.

Nalpas NC, Park SD, Magee DA, Taraktsoglou M, Browne JA, Conlon KM, Rue-Albrecht K, Killick KE, Hokamp K, Lohan AJ, Loftus BJ, Gormley E, Gordon SV, MacHugh DE.

BMC Genomics. 2013 Apr 8;14:230. doi: 10.1186/1471-2164-14-230.

15.

The WalRK (YycFG) and σ(I) RsgI regulators cooperate to control CwlO and LytE expression in exponentially growing and stressed Bacillus subtilis cells.

Salzberg LI, Powell L, Hokamp K, Botella E, Noone D, Devine KM.

Mol Microbiol. 2013 Jan;87(1):180-95. doi: 10.1111/mmi.12092. Epub 2012 Nov 30.

PMID:
23199363
16.

LeuO is a global regulator of gene expression in Salmonella enterica serovar Typhimurium.

Dillon SC, Espinosa E, Hokamp K, Ussery DW, Casadesús J, Dorman CJ.

Mol Microbiol. 2012 Sep;85(6):1072-89. doi: 10.1111/j.1365-2958.2012.08162.x. Epub 2012 Jul 23.

PMID:
22804842
17.

Proteome-wide analysis of functional divergence in bacteria: exploring a host of ecological adaptations.

Caffrey BE, Williams TA, Jiang X, Toft C, Hokamp K, Fares MA.

PLoS One. 2012;7(4):e35659. doi: 10.1371/journal.pone.0035659. Epub 2012 Apr 26.

18.

The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium.

Kröger C, Dillon SC, Cameron AD, Papenfort K, Sivasankaran SK, Hokamp K, Chao Y, Sittka A, Hébrard M, Händler K, Colgan A, Leekitcharoenphon P, Langridge GC, Lohan AJ, Loftus B, Lucchini S, Ussery DW, Dorman CJ, Thomson NR, Vogel J, Hinton JC.

Proc Natl Acad Sci U S A. 2012 May 15;109(20):E1277-86. doi: 10.1073/pnas.1201061109. Epub 2012 Apr 25.

19.

Pan-genomic analysis of bovine monocyte-derived macrophage gene expression in response to in vitro infection with Mycobacterium avium subspecies paratuberculosis.

Machugh DE, Taraktsoglou M, Killick KE, Nalpas NC, Browne JA, DE Park S, Hokamp K, Gormley E, Magee DA.

Vet Res. 2012 Mar 28;43:25. doi: 10.1186/1297-9716-43-25.

20.

Global gene expression and systems biology analysis of bovine monocyte-derived macrophages in response to in vitro challenge with Mycobacterium bovis.

Magee DA, Taraktsoglou M, Killick KE, Nalpas NC, Browne JA, Park SD, Conlon KM, Lynn DJ, Hokamp K, Gordon SV, Gormley E, MacHugh DE.

PLoS One. 2012;7(2):e32034. doi: 10.1371/journal.pone.0032034. Epub 2012 Feb 22.

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