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Results: 1 to 20 of 34

1.

CSEO - the Cigarette Smoke Exposure Ontology.

Younesi E, Ansari S, Guendel M, Ahmadi S, Coggins C, Hoeng J, Hofmann-Apitius M, Peitsch MC.

J Biomed Semantics. 2014 Jul 10;5:31. doi: 10.1186/2041-1480-5-31. eCollection 2014.

PMID:
25093069
[PubMed]
Free PMC Article
2.

Pathway based analysis of genes and interactions influencing porcine testis samples from boars with divergent androstenone content in back fat.

Sahadevan S, Gunawan A, Tholen E, Große-Brinkhaus C, Tesfaye D, Schellander K, Hofmann-Apitius M, Cinar MU, Uddin MJ.

PLoS One. 2014 Mar 10;9(3):e91077. doi: 10.1371/journal.pone.0091077. eCollection 2014.

PMID:
24614349
[PubMed - in process]
Free PMC Article
3.

Biomarker-guided translation of brain imaging into disease pathway models.

Younesi E, Hofmann-Apitius M.

Sci Rep. 2013 Nov 29;3:3375. doi: 10.1038/srep03375.

PMID:
24287435
[PubMed - in process]
Free PMC Article
4.

HuPSON: the human physiology simulation ontology.

Gündel M, Younesi E, Malhotra A, Wang J, Li H, Zhang B, de Bono B, Mevissen HT, Hofmann-Apitius M.

J Biomed Semantics. 2013 Nov 22;4(1):35. doi: 10.1186/2041-1480-4-35.

PMID:
24267822
[PubMed]
Free Article
5.

From integrative disease modeling to predictive, preventive, personalized and participatory (P4) medicine.

Younesi E, Hofmann-Apitius M.

EPMA J. 2013 Nov 6;4(1):23. doi: 10.1186/1878-5085-4-23.

PMID:
24195840
[PubMed]
Free PMC Article
6.

Text mining for systems biology.

Fluck J, Hofmann-Apitius M.

Drug Discov Today. 2014 Feb;19(2):140-4. doi: 10.1016/j.drudis.2013.09.012. Epub 2013 Sep 23.

PMID:
24070668
[PubMed - in process]
7.

'HypothesisFinder:' a strategy for the detection of speculative statements in scientific text.

Malhotra A, Younesi E, Gurulingappa H, Hofmann-Apitius M.

PLoS Comput Biol. 2013;9(7):e1003117. doi: 10.1371/journal.pcbi.1003117. Epub 2013 Jul 25.

PMID:
23935466
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

A network model of genomic hormone interactions underlying dementia and its translational validation through serendipitous off-target effect.

Younesi E, Hofmann-Apitius M.

J Transl Med. 2013 Jul 26;11:177. doi: 10.1186/1479-5876-11-177.

PMID:
23885764
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

ADO: a disease ontology representing the domain knowledge specific to Alzheimer's disease.

Malhotra A, Younesi E, Gündel M, Müller B, Heneka MT, Hofmann-Apitius M.

Alzheimers Dement. 2014 Mar;10(2):238-46. doi: 10.1016/j.jalz.2013.02.009. Epub 2013 Jul 3.

PMID:
23830913
[PubMed - in process]
Free Article
10.

Challenges and opportunities for oncology biomarker discovery.

Deyati A, Younesi E, Hofmann-Apitius M, Novac N.

Drug Discov Today. 2013 Jul;18(13-14):614-24. doi: 10.1016/j.drudis.2012.12.011. Epub 2012 Dec 29. Review.

PMID:
23280501
[PubMed - indexed for MEDLINE]
11.

Mining biomarker information in biomedical literature.

Younesi E, Toldo L, Müller B, Friedrich CM, Novac N, Scheer A, Hofmann-Apitius M, Fluck J.

BMC Med Inform Decis Mak. 2012 Dec 18;12:148. doi: 10.1186/1472-6947-12-148.

PMID:
23249606
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Text mining in livestock animal science: introducing the potential of text mining to animal sciences.

Sahadevan S, Hofmann-Apitius M, Schellander K, Tesfaye D, Fluck J, Friedrich CM.

J Anim Sci. 2012 Oct;90(10):3666-76. doi: 10.2527/jas.2011-4841. Epub 2012 Jun 4.

PMID:
22665627
[PubMed - indexed for MEDLINE]
Free Article
13.

Development of a benchmark corpus to support the automatic extraction of drug-related adverse effects from medical case reports.

Gurulingappa H, Rajput AM, Roberts A, Fluck J, Hofmann-Apitius M, Toldo L.

J Biomed Inform. 2012 Oct;45(5):885-92. doi: 10.1016/j.jbi.2012.04.008. Epub 2012 Apr 25.

PMID:
22554702
[PubMed - indexed for MEDLINE]
Free Article
14.

Challenges in the association of human single nucleotide polymorphism mentions with unique database identifiers.

Thomas PE, Klinger R, Furlong LI, Hofmann-Apitius M, Friedrich CM.

BMC Bioinformatics. 2011;12 Suppl 4:S4. doi: 10.1186/1471-2105-12-S4-S4. Epub 2011 Jul 5.

PMID:
21992066
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

PLIO: an ontology for formal description of protein-ligand interactions.

Ivchenko O, Younesi E, Shahid M, Wolf A, Müller B, Hofmann-Apitius M.

Bioinformatics. 2011 Jun 15;27(12):1684-90. doi: 10.1093/bioinformatics/btr256. Epub 2011 May 5.

PMID:
21546398
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Concept-based semi-automatic classification of drugs.

Gurulingappa H, Kolárik C, Hofmann-Apitius M, Fluck J.

J Chem Inf Model. 2009 Aug;49(8):1986-92. doi: 10.1021/ci9000844.

PMID:
19663460
[PubMed - indexed for MEDLINE]
17.

In silico drug discovery approaches on grid computing infrastructures.

Wolf A, Shahid M, Kasam V, Ziegler W, Hofmann-Apitius M.

Curr Clin Pharmacol. 2010 Feb;5(1):37-46. Review.

PMID:
19642967
[PubMed - indexed for MEDLINE]
18.

A robust framework for rapid deployment of a virtual screening laboratory.

Shahid M, Hofmann-Apitius M, Wäldrich O, Ziegler W.

Stud Health Technol Inform. 2009;147:212-21.

PMID:
19593059
[PubMed - indexed for MEDLINE]
19.

DockFlow - a prototypic PharmaGrid for virtual screening integrating four different docking tools.

Wolf A, Hofmann-Apitius M, Ghanem M, Azam N, Kalaitzopoulos D, Yu K, Kasam V.

Stud Health Technol Inform. 2009;147:3-12.

PMID:
19593039
[PubMed - indexed for MEDLINE]
20.

WISDOM-II: screening against multiple targets implicated in malaria using computational grid infrastructures.

Kasam V, Salzemann J, Botha M, Dacosta A, Degliesposti G, Isea R, Kim D, Maass A, Kenyon C, Rastelli G, Hofmann-Apitius M, Breton V.

Malar J. 2009 May 1;8:88. doi: 10.1186/1475-2875-8-88.

PMID:
19409081
[PubMed - indexed for MEDLINE]
Free PMC Article

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