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Results: 1 to 20 of 54

1.

Correcting for link loss in causal network inference caused by regulator interference.

Wang Y, Penfold CA, Hodgson DA, Gifford ML, Burroughs NJ.

Bioinformatics. 2014 Jun 19. pii: btu388. [Epub ahead of print]

PMID:
24947751
[PubMed - as supplied by publisher]
Free Article
2.

Plants and soil microbes respond to recent warming on the Antarctic Peninsula.

Royles J, Amesbury MJ, Convey P, Griffiths H, Hodgson DA, Leng MJ, Charman DJ.

Curr Biol. 2013 Sep 9;23(17):1702-6. doi: 10.1016/j.cub.2013.07.011. Epub 2013 Aug 29.

PMID:
23993839
[PubMed - indexed for MEDLINE]
3.

Temporal separation between CO2 assimilation and growth? Experimental and theoretical evidence from the desiccation-tolerant moss Syntrichia ruralis.

Royles J, Ogée J, Wingate L, Hodgson DA, Convey P, Griffiths H.

New Phytol. 2013 Mar;197(4):1152-60. doi: 10.1111/nph.12114. Epub 2013 Jan 11.

PMID:
23311300
[PubMed - indexed for MEDLINE]
4.

Long-range transport of pollutants to the Falkland Islands and Antarctica: evidence from lake sediment fly ash particle records.

Rose NL, Jones VJ, Noon PE, Hodgson DA, Flower RJ, Appleby PG.

Environ Sci Technol. 2012 Sep 18;46(18):9881-9. doi: 10.1021/es3023013. Epub 2012 Aug 30.

PMID:
22891669
[PubMed - indexed for MEDLINE]
5.

Optimized submerged batch fermentation strategy for systems scale studies of metabolic switching in Streptomyces coelicolor A3(2).

Wentzel A, Bruheim P, Øverby A, Jakobsen ØM, Sletta H, Omara WA, Hodgson DA, Ellingsen TE.

BMC Syst Biol. 2012 Jun 7;6:59. doi: 10.1186/1752-0509-6-59.

PMID:
22676814
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Extracting regulator activity profiles by integration of de novo motifs and expression data: characterizing key regulators of nutrient depletion responses in Streptomyces coelicolor.

Iqbal M, Mast Y, Amin R, Hodgson DA; STREAM Consortium, Wohlleben W, Burroughs NJ.

Nucleic Acids Res. 2012 Jul;40(12):5227-39. doi: 10.1093/nar/gks205. Epub 2012 Mar 9.

PMID:
22406834
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Metabolic switches and adaptations deduced from the proteomes of Streptomyces coelicolor wild type and phoP mutant grown in batch culture.

Thomas L, Hodgson DA, Wentzel A, Nieselt K, Ellingsen TE, Moore J, Morrissey ER, Legaie R; STREAM Consortium, Wohlleben W, Rodríguez-García A, Martín JF, Burroughs NJ, Wellington EM, Smith MC.

Mol Cell Proteomics. 2012 Feb;11(2):M111.013797. doi: 10.1074/mcp.M111.013797. Epub 2011 Dec 6.

PMID:
22147733
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

First synchronous retreat of ice shelves marks a new phase of polar deglaciation.

Hodgson DA.

Proc Natl Acad Sci U S A. 2011 Nov 22;108(47):18859-60. doi: 10.1073/pnas.1116515108. Epub 2011 Nov 14. No abstract available.

PMID:
22084088
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

The PII protein GlnK is a pleiotropic regulator for morphological differentiation and secondary metabolism in Streptomyces coelicolor.

Waldvogel E, Herbig A, Battke F, Amin R, Nentwich M, Nieselt K, Ellingsen TE, Wentzel A, Hodgson DA, Wohlleben W, Mast Y.

Appl Microbiol Biotechnol. 2011 Dec;92(6):1219-36. doi: 10.1007/s00253-011-3644-1. Epub 2011 Oct 28.

PMID:
22033567
[PubMed - indexed for MEDLINE]
10.

Low cyanobacterial diversity in biotopes of the Transantarctic Mountains and Shackleton Range (80-82°S), Antarctica.

Fernandez-Carazo R, Hodgson DA, Convey P, Wilmotte A.

FEMS Microbiol Ecol. 2011 Sep;77(3):503-17. doi: 10.1111/j.1574-6941.2011.01132.x. Epub 2011 Jul 4.

PMID:
21592144
[PubMed - indexed for MEDLINE]
11.

A technical platform for generating reproducible expression data from Streptomyces coelicolor batch cultivations.

Battke F, Herbig A, Wentzel A, Jakobsen OM, Bonin M, Hodgson DA, Wohlleben W, Ellingsen TE; STREAM Consortium, Nieselt K.

Adv Exp Med Biol. 2011;696:3-15. doi: 10.1007/978-1-4419-7046-6_1.

PMID:
21431541
[PubMed - indexed for MEDLINE]
12.

Culturable diversity of heterotrophic bacteria in Forlidas Pond (Pensacola Mountains) and Lundström Lake (Shackleton Range), Antarctica.

Peeters K, Hodgson DA, Convey P, Willems A.

Microb Ecol. 2011 Aug;62(2):399-413. doi: 10.1007/s00248-011-9842-7. Epub 2011 Mar 22.

PMID:
21424822
[PubMed - indexed for MEDLINE]
13.

Multicopy proC in Streptomyces coelicolor A3(2) elicits a transient production of prodiginines, while proC deletion does not yield a proline auxotroph.

Barona-Gómez F, Hodgson DA.

J Mol Microbiol Biotechnol. 2010;19(3):152-8. doi: 10.1159/000321502. Epub 2010 Oct 6.

PMID:
20924202
[PubMed - indexed for MEDLINE]
14.

Metabolic modeling and analysis of the metabolic switch in Streptomyces coelicolor.

Alam MT, Merlo ME; STREAM Consortium, Hodgson DA, Wellington EM, Takano E, Breitling R.

BMC Genomics. 2010 Mar 26;11:202. doi: 10.1186/1471-2164-11-202.

PMID:
20338070
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

An approach to pathway reconstruction using whole genome metabolic models and sensitive sequence searching.

Saqi M, Dobson RJ, Kraben P, Hodgson DA, Wild DL.

J Integr Bioinform. 2009 Jul 5;6(1):107. doi: 10.2390/biecoll-jib-2009-107.

PMID:
20134075
[PubMed - indexed for MEDLINE]
16.

The dynamic architecture of the metabolic switch in Streptomyces coelicolor.

Nieselt K, Battke F, Herbig A, Bruheim P, Wentzel A, Jakobsen ØM, Sletta H, Alam MT, Merlo ME, Moore J, Omara WA, Morrissey ER, Juarez-Hermosillo MA, Rodríguez-García A, Nentwich M, Thomas L, Iqbal M, Legaie R, Gaze WH, Challis GL, Jansen RC, Dijkhuizen L, Rand DA, Wild DL, Bonin M, Reuther J, Wohlleben W, Smith MC, Burroughs NJ, Martín JF, Hodgson DA, Takano E, Breitling R, Ellingsen TE, Wellington EM.

BMC Genomics. 2010 Jan 6;11:10. doi: 10.1186/1471-2164-11-10.

PMID:
20053288
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Hidden levels of phylodiversity in Antarctic green algae: further evidence for the existence of glacial refugia.

De Wever A, Leliaert F, Verleyen E, Vanormelingen P, Van der Gucht K, Hodgson DA, Sabbe K, Vyverman W.

Proc Biol Sci. 2009 Oct 22;276(1673):3591-9. doi: 10.1098/rspb.2009.0994. Epub 2009 Jul 22.

PMID:
19625320
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Protein-protein interactions between two-component system transmitter and receiver domains of Myxococcus xanthus.

Whitworth DE, Millard A, Hodgson DA, Hawkins PF.

Proteomics. 2008 May;8(9):1839-42. doi: 10.1002/pmic.200700544.

PMID:
18442170
[PubMed - indexed for MEDLINE]
19.

Antarctic terrestrial life--challenging the history of the frozen continent?

Convey P, Gibson JA, Hillenbrand CD, Hodgson DA, Pugh PJ, Smellie JL, Stevens MI.

Biol Rev Camb Philos Soc. 2008 May;83(2):103-17. doi: 10.1111/j.1469-185X.2008.00034.x. Review.

PMID:
18429764
[PubMed - indexed for MEDLINE]
20.

Cyanobacteria from benthic mats of Antarctic lakes as a source of new bioactivities.

Biondi N, Tredici MR, Taton A, Wilmotte A, Hodgson DA, Losi D, Marinelli F.

J Appl Microbiol. 2008 Jul;105(1):105-15. doi: 10.1111/j.1365-2672.2007.03716.x. Epub 2008 Jan 23.

PMID:
18217933
[PubMed - indexed for MEDLINE]

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