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Discrete and structurally unique proteins (tāpirins) mediate attachment of extremely thermophilic Caldicellulosiruptor species to cellulose.

Blumer-Schuette SE, Alahuhta M, Conway JM, Lee LL, Zurawski JV, Giannone RJ, Hettich RL, Lunin VV, Himmel ME, Kelly RM.

J Biol Chem. 2015 Feb 26. pii: jbc.M115.641480. [Epub ahead of print]


A comparative multidimensional LC-MS proteomic analysis reveals mechanisms for furan aldehyde detoxification in Thermoanaerobacter pseudethanolicus 39E.

Clarkson SM, Hamilton-Brehm SD, Giannone RJ, Engle NL, Tschaplinski TJ, Hettich RL, Elkins JG.

Biotechnol Biofuels. 2014 Dec 3;7(1):165. doi: 10.1186/s13068-014-0165-z. eCollection 2014.


Development of an enhanced metaproteomic approach for deepening the microbiome characterization of the human infant gut.

Xiong W, Giannone RJ, Morowitz MJ, Banfield JF, Hettich RL.

J Proteome Res. 2015 Jan 2;14(1):133-41. doi: 10.1021/pr500936p. Epub 2014 Nov 12.


Nitrogen cycling. The environmental controls that govern the end product of bacterial nitrate respiration.

Kraft B, Tegetmeyer HE, Sharma R, Klotz MG, Ferdelman TG, Hettich RL, Geelhoed JS, Strous M.

Science. 2014 Aug 8;345(6197):676-9. doi: 10.1126/science.1254070.


Diverse and divergent protein post-translational modifications in two growth stages of a natural microbial community.

Li Z, Wang Y, Yao Q, Justice NB, Ahn TH, Xu D, Hettich RL, Banfield JF, Pan C.

Nat Commun. 2014 Jul 25;5:4405. doi: 10.1038/ncomms5405.


Elevated temperature alters proteomic responses of individual organisms within a biofilm community.

Mosier AC, Li Z, Thomas BC, Hettich RL, Pan C, Banfield JF.

ISME J. 2015 Jan;9(1):180-94. doi: 10.1038/ismej.2014.113. Epub 2014 Jul 22.


Life on the edge: functional genomic response of Ignicoccus hospitalis to the presence of Nanoarchaeum equitans.

Giannone RJ, Wurch LL, Heimerl T, Martin S, Yang Z, Huber H, Rachel R, Hettich RL, Podar M.

ISME J. 2015 Jan;9(1):101-14. doi: 10.1038/ismej.2014.112. Epub 2014 Jul 11.


Metaproteomics: extracting and mining proteome information to characterize metabolic activities in microbial communities.

Abraham PE, Giannone RJ, Xiong W, Hettich RL.

Curr Protoc Bioinformatics. 2014 Jun 17;46:13.26.1-13.26.14. doi: 10.1002/0471250953.bi1326s46.


Profile of secreted hydrolases, associated proteins, and SlpA in Thermoanaerobacterium saccharolyticum during the degradation of hemicellulose.

Currie DH, Guss AM, Herring CD, Giannone RJ, Johnson CM, Lankford PK, Brown SD, Hettich RL, Lynd LR.

Appl Environ Microbiol. 2014 Aug;80(16):5001-11. doi: 10.1128/AEM.00998-14. Epub 2014 Jun 6.


Recoding of the stop codon UGA to glycine by a BD1-5/SN-2 bacterium and niche partitioning between Alpha- and Gammaproteobacteria in a tidal sediment microbial community naturally selected in a laboratory chemostat.

Hanke A, Hamann E, Sharma R, Geelhoed JS, Hargesheimer T, Kraft B, Meyer V, Lenk S, Osmers H, Wu R, Makinwa K, Hettich RL, Banfield JF, Tegetmeyer HE, Strous M.

Front Microbiol. 2014 May 16;5:231. doi: 10.3389/fmicb.2014.00231. eCollection 2014.


(15)N- and (2)H proteomic stable isotope probing links nitrogen flow to archaeal heterotrophic activity.

Justice NB, Li Z, Wang Y, Spaudling SE, Mosier AC, Hettich RL, Pan C, Banfield JF.

Environ Microbiol. 2014 Oct;16(10):3224-37. doi: 10.1111/1462-2920.12488. Epub 2014 May 20.


Development of a multipoint quantitation method to simultaneously measure enzymatic and structural components of the Clostridium thermocellum cellulosome protein complex.

Dykstra AB, St Brice L, Rodriguez M Jr, Raman B, Izquierdo J, Cook KD, Lynd LR, Hettich RL.

J Proteome Res. 2014 Feb 7;13(2):692-701. doi: 10.1021/pr400788e. Epub 2013 Dec 6.


Identification and environmental distribution of dcpA, which encodes the reductive dehalogenase catalyzing the dichloroelimination of 1,2-dichloropropane to propene in organohalide-respiring chloroflexi.

Padilla-Crespo E, Yan J, Swift C, Wagner DD, Chourey K, Hettich RL, Ritalahti KM, Löffler FE.

Appl Environ Microbiol. 2014 Feb;80(3):808-18. doi: 10.1128/AEM.02927-13. Epub 2013 Nov 15.


Geochemical, metagenomic and metaproteomic insights into trace metal utilization by methane-oxidizing microbial consortia in sulphidic marine sediments.

Glass JB, Yu H, Steele JA, Dawson KS, Sun S, Chourey K, Pan C, Hettich RL, Orphan VJ.

Environ Microbiol. 2014 Jun;16(6):1592-611. doi: 10.1111/1462-2920.12314. Epub 2013 Nov 14.


Effects of diet on resource utilization by a model human gut microbiota containing Bacteroides cellulosilyticus WH2, a symbiont with an extensive glycobiome.

McNulty NP, Wu M, Erickson AR, Pan C, Erickson BK, Martens EC, Pudlo NA, Muegge BD, Henrissat B, Hettich RL, Gordon JI.

PLoS Biol. 2013;11(8):e1001637. doi: 10.1371/journal.pbio.1001637. Epub 2013 Aug 20.


Environmental proteomics reveals early microbial community responses to biostimulation at a uranium- and nitrate-contaminated site.

Chourey K, Nissen S, Vishnivetskaya T, Shah M, Pfiffner S, Hettich RL, Löffler FE.

Proteomics. 2013 Oct;13(18-19):2921-30. doi: 10.1002/pmic.201300155. Epub 2013 Aug 22.


Isolation and chemical analysis of nanoparticles from English ivy (Hedera helix L.).

Lenaghan SC, Burris JN, Chourey K, Huang Y, Xia L, Lady B, Sharma R, Pan C, LeJeune Z, Foister S, Hettich RL, Stewart CN Jr, Zhang M.

J R Soc Interface. 2013 Jul 24;10(87):20130392. doi: 10.1098/rsif.2013.0392. Print 2013 Oct 6.


Comparative informatics analysis to evaluate site-specific protein oxidation in multidimensional LC-MS/MS data.

McClintock CS, Parks JM, Bern M, Ghattyvenkatakrishna PK, Hettich RL.

J Proteome Res. 2013 Jul 5;12(7):3307-16. doi: 10.1021/pr400141p. Epub 2013 Jun 19.


Moving away from the reference genome: evaluating a peptide sequencing tagging approach for single amino acid polymorphism identifications in the genus Populus.

Abraham P, Adams RM, Tuskan GA, Hettich RL.

J Proteome Res. 2013 Aug 2;12(8):3642-51. doi: 10.1021/pr400192r. Epub 2013 Jul 23.


Insights into the structure and metabolic function of microbes that shape pelagic iron-rich aggregates ("iron snow").

Lu S, Chourey K, Reiche M, Nietzsche S, Shah MB, Neu TR, Hettich RL, Küsel K.

Appl Environ Microbiol. 2013 Jul;79(14):4272-81. doi: 10.1128/AEM.00467-13. Epub 2013 May 3.

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